Human Gene GUSB (ENST00000304895.9_7) from GENCODE V47lift37
  Description: glucuronidase beta, transcript variant 5 (from RefSeq NR_120531.2)
Gencode Transcript: ENST00000304895.9_7
Gencode Gene: ENSG00000169919.17_9
Transcript (Including UTRs)
   Position: hg19 chr7:65,425,671-65,447,200 Size: 21,530 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr7:65,425,884-65,447,170 Size: 21,287 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:65,425,671-65,447,200)mRNA (may differ from genome)Protein (651 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BGLR_HUMAN
DESCRIPTION: RecName: Full=Beta-glucuronidase; EC=3.2.1.31; AltName: Full=Beta-G1; Flags: Precursor;
FUNCTION: Plays an important role in the degradation of dermatan and keratan sulfates.
CATALYTIC ACTIVITY: A beta-D-glucuronoside + H(2)O = D-glucuronate + an alcohol.
ENZYME REGULATION: Inhibited by L-aspartic acid.
SUBUNIT: Homotetramer.
SUBCELLULAR LOCATION: Lysosome.
PTM: N-linked glycosylated with 3 to 4 oligosaccharide chains.
DISEASE: Defects in GUSB are the cause of mucopolysaccharidosis type 7 (MPS7) [MIM:253220]; also known as Sly syndrome. MPS7 is an autosomal recessive lysosomal storage disease characterized by inability to degrade glucuronic acid-containing glycosaminoglycans. The phenotype is highly variable, ranging from severe lethal hydrops fetalis to mild forms with survival into adulthood. Most patients with the intermediate phenotype show hepatomegaly, skeletal anomalies, coarse facies, and variable degrees of mental impairment.
DISEASE: Note=Mucopolysaccharidosis type 7 is associated with non- immune hydrops fetalis, a generalized edema of the fetus with fluid accumulation in the body cavities due to non-immune causes. Non-immune hydrops fetalis is not a diagnosis in itself but a symptom, a feature of many genetic disorders, and the end-stage of a wide variety of disorders.
SIMILARITY: Belongs to the glycosyl hydrolase 2 family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/GUSB";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GUSB
Diseases sorted by gene-association score: mucopolysaccharidosis vii* (1690), hydrops fetalis (26), lysosomal storage disease (23), necrotizing ulcerative gingivitis (18), choledocholithiasis (13), acalculous cholecystitis (13), bronchopneumonia (13), mucopolysaccharidoses (13), mucopolysaccharidosis-plus syndrome (10), gingivitis (9), mucolipidosis iii alpha/beta (8), periodontal disease (7), bacteremia (7), immune hydrops fetalis (6), mucolipidosis ii alpha/beta (6), erysipelas (5), chediak-higashi syndrome (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 43.42 RPKM in Spleen
Total median expression: 932.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -8.0030-0.267 Picture PostScript Text
3' UTR -57.10213-0.268 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008979 - Galactose-bd-like
IPR006101 - Glyco_hydro_2
IPR013812 - Glyco_hydro_2/20_Ig-like
IPR023232 - Glyco_hydro_2_AS
IPR023230 - Glyco_hydro_2_CS
IPR006102 - Glyco_hydro_2_Ig-like
IPR006104 - Glyco_hydro_2_N
IPR006103 - Glyco_hydro_2_TIM
IPR013781 - Glyco_hydro_catalytic_dom
IPR017853 - Glycoside_hydrolase_SF

Pfam Domains:
PF00703 - Glycosyl hydrolases family 2
PF02836 - Glycosyl hydrolases family 2, TIM barrel domain
PF02837 - Glycosyl hydrolases family 2, sugar binding domain

SCOP Domains:
49303 - beta-Galactosidase/glucuronidase domain
49785 - Galactose-binding domain-like
51445 - (Trans)glycosidases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1BHG - X-ray MuPIT 3HN3 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P08236
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004566 beta-glucuronidase activity
GO:0005102 receptor binding
GO:0016787 hydrolase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0019904 protein domain specific binding

Biological Process:
GO:0005975 carbohydrate metabolic process
GO:0006027 glycosaminoglycan catabolic process
GO:0008152 metabolic process
GO:0030214 hyaluronan catabolic process
GO:0043312 neutrophil degranulation

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005764 lysosome
GO:0016020 membrane
GO:0035578 azurophil granule lumen
GO:0043202 lysosomal lumen
GO:0043231 intracellular membrane-bounded organelle
GO:0070062 extracellular exosome
GO:1904813 ficolin-1-rich granule lumen


-  Descriptions from all associated GenBank mRNAs
  AK223406 - Homo sapiens mRNA for glucuronidase, beta variant, clone: FCC108D01.
LF384035 - JP 2014500723-A/191538: Polycomb-Associated Non-Coding RNAs.
AK096764 - Homo sapiens cDNA FLJ39445 fis, clone PROST2006933, highly similar to BETA-GLUCURONIDASE PRECURSOR (EC 3.2.1.31).
M15182 - Human beta-glucuronidase mRNA, complete cds.
AK300223 - Homo sapiens cDNA FLJ53190 complete cds, highly similar to Beta-glucuronidase precursor (EC 3.2.1.31).
BC014142 - Homo sapiens glucuronidase, beta, mRNA (cDNA clone MGC:20659 IMAGE:4662011), complete cds.
AK303819 - Homo sapiens cDNA FLJ53268 complete cds, highly similar to Beta-glucuronidase precursor (EC 3.2.1.31).
JD058499 - Sequence 39523 from Patent EP1572962.
JD391732 - Sequence 372756 from Patent EP1572962.
JD116329 - Sequence 97353 from Patent EP1572962.
JD059457 - Sequence 40481 from Patent EP1572962.
AK312752 - Homo sapiens cDNA, FLJ93161, highly similar to Homo sapiens glucuronidase, beta (GUSB), mRNA.
KJ891316 - Synthetic construct Homo sapiens clone ccsbBroadEn_00710 GUSB gene, encodes complete protein.
KR710473 - Synthetic construct Homo sapiens clone CCSBHm_00013195 GUSB (GUSB) mRNA, encodes complete protein.
KR710474 - Synthetic construct Homo sapiens clone CCSBHm_00013201 GUSB (GUSB) mRNA, encodes complete protein.
KR710475 - Synthetic construct Homo sapiens clone CCSBHm_00013213 GUSB (GUSB) mRNA, encodes complete protein.
KR710476 - Synthetic construct Homo sapiens clone CCSBHm_00013231 GUSB (GUSB) mRNA, encodes complete protein.
DQ892941 - Synthetic construct clone IMAGE:100005571; FLH191026.01X; RZPDo839G0776D glucuronidase, beta (GUSB) gene, encodes complete protein.
DQ896190 - Synthetic construct Homo sapiens clone IMAGE:100010650; FLH191022.01L; RZPDo839G0766D glucuronidase, beta (GUSB) gene, encodes complete protein.
M10618 - Human beta-glucuronidase (BG) mRNA, partial cds.
LF359780 - JP 2014500723-A/167283: Polycomb-Associated Non-Coding RNAs.
JD493969 - Sequence 474993 from Patent EP1572962.
LF359781 - JP 2014500723-A/167284: Polycomb-Associated Non-Coding RNAs.
LF359782 - JP 2014500723-A/167285: Polycomb-Associated Non-Coding RNAs.
LF359783 - JP 2014500723-A/167286: Polycomb-Associated Non-Coding RNAs.
LF359784 - JP 2014500723-A/167287: Polycomb-Associated Non-Coding RNAs.
LF359785 - JP 2014500723-A/167288: Polycomb-Associated Non-Coding RNAs.
AK311273 - Homo sapiens cDNA, FLJ18315.
CU680802 - Synthetic construct Homo sapiens gateway clone IMAGE:100018389 5' read GUSB mRNA.
JD030193 - Sequence 11217 from Patent EP1572962.
JD024790 - Sequence 5814 from Patent EP1572962.
JD216955 - Sequence 197979 from Patent EP1572962.
MA619612 - JP 2018138019-A/191538: Polycomb-Associated Non-Coding RNAs.
MA595357 - JP 2018138019-A/167283: Polycomb-Associated Non-Coding RNAs.
MA595358 - JP 2018138019-A/167284: Polycomb-Associated Non-Coding RNAs.
MA595359 - JP 2018138019-A/167285: Polycomb-Associated Non-Coding RNAs.
MA595360 - JP 2018138019-A/167286: Polycomb-Associated Non-Coding RNAs.
MA595361 - JP 2018138019-A/167287: Polycomb-Associated Non-Coding RNAs.
MA595362 - JP 2018138019-A/167288: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P08236 (Reactome details) participates in the following event(s):

R-HSA-6798751 Exocytosis of azurophil granule lumen proteins
R-HSA-6800434 Exocytosis of ficolin-rich granule lumen proteins
R-HSA-1678854 GUSB tetramer hydrolyses CS/HS precursor
R-HSA-2162226 GUSB tetramer hydrolyses GlcA-β1,3-GlcNAc
R-HSA-2162227 GUSB tetramer hydrolyses (HA)2
R-HSA-6798695 Neutrophil degranulation
R-HSA-2024096 HS-GAG degradation
R-HSA-2160916 Hyaluronan uptake and degradation
R-HSA-168249 Innate Immune System
R-HSA-1638091 Heparan sulfate/heparin (HS-GAG) metabolism
R-HSA-2142845 Hyaluronan metabolism
R-HSA-168256 Immune System
R-HSA-1630316 Glycosaminoglycan metabolism
R-HSA-71387 Metabolism of carbohydrates
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B4E1F6, BGLR_HUMAN, E9PCV0, ENST00000304895.1, ENST00000304895.2, ENST00000304895.3, ENST00000304895.4, ENST00000304895.5, ENST00000304895.6, ENST00000304895.7, ENST00000304895.8, NR_120531, P08236, Q549U0, Q96CL9, uc317nnt.1, uc317nnt.2
UCSC ID: ENST00000304895.9_7
RefSeq Accession: NM_000181.4
Protein: P08236 (aka BGLR_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene GUSB:
mps7 (Mucopolysaccharidosis Type VII)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.