Human Gene GRK5 (ENST00000392870.3_4) from GENCODE V47lift37
  Description: G protein-coupled receptor kinase 5 (from RefSeq NM_005308.3)
Gencode Transcript: ENST00000392870.3_4
Gencode Gene: ENSG00000198873.12_8
Transcript (Including UTRs)
   Position: hg19 chr10:120,967,083-121,219,257 Size: 252,175 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg19 chr10:120,967,430-121,214,579 Size: 247,150 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:120,967,083-121,219,257)mRNA (may differ from genome)Protein (590 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GRK5_HUMAN
DESCRIPTION: RecName: Full=G protein-coupled receptor kinase 5; EC=2.7.11.16; AltName: Full=G protein-coupled receptor kinase GRK5;
FUNCTION: Serine/threonine kinase that phosphorylates preferentially the activated forms of a variety of G-protein- coupled receptors (GPCRs). Such receptor phosphorylation initiates beta-arrestin-mediated receptor desensitization, internalization, and signaling events leading to their down-regulation. Phosphorylates a variety of GPCRs, including adrenergic receptors, muscarinic acetylcholine receptors (more specifically Gi-coupled M2/M4 subtypes), dopamine receptors and opioid receptors. In addition to GPCRs, also phosphorylates various substrates: Hsc70- interacting protein/ST13, TP53/p53, HDAC5, and arrestin-1/ARRB1. Phosphorylation of ARRB1 by GRK5 inhibits G-protein independent MAPK1/MAPK3 signaling downstream of 5HT4-receptors. Phosphorylation of HDAC5, a repressor of myocyte enhancer factor 2 (MEF2) leading to nuclear export of HDAC5 and allowing MEF2- mediated transcription. Phosphorylation of TP53/p53, a crucial tumor suppressor, inhibits TP53/p53-mediated apoptosis. Phosphorylation of ST13 regulates internalization of the chemokine receptor. Phosphorylates rhodopsin (RHO) (in vitro) and a non G- protein-coupled receptor, LRP6 during Wnt signaling (in vitro).
CATALYTIC ACTIVITY: ATP + [G-protein-coupled receptor] = ADP + [G- protein-coupled receptor] phosphate.
ENZYME REGULATION: Inhibited by calmodulin with an IC(50) of 50 nM. Calmodulin inhibits GRK5 association with receptor and phospholipid.
SUBUNIT: Interacts with ST13 (via the C-terminus 303-319 AA). Interacts with TP53/p53. Interacts with HTR4 (via C-terminus 330- 346 AA); this interaction is promoted by 5-HT (serotonin). Interacts with HDAC5 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Cell membrane; Peripheral membrane protein. Note=Predominantly localized at the plasma membrane; targeted to the cell surface through the interaction with phospholipids. Nucleus localization is regulated in a GPCR and Ca(2+)/calmodulin-dependent fashion.
TISSUE SPECIFICITY: Highest levels in heart, placenta, lung > skeletal muscle > brain, liver, pancreas > kidney.
INDUCTION: Overexpressed during heart failure.
PTM: Autophosphorylated. Autophosphorylation may play a critical role in the regulation of GRK5 kinase activity.
POLYMORPHISM: Variant Leu-41 variant is rare in European-Americans individuals but common in African-Americans individuals (40% of the African-American individuals studied carry at least one allele). Variant leu-41 is associated with decreased mortality in African-Americans with heart failure or cardiac ischemia.
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 1 protein kinase domain.
SIMILARITY: Contains 1 RGS domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 46.87 RPKM in Lung
Total median expression: 725.19 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -140.80347-0.406 Picture PostScript Text
3' UTR -1683.504678-0.360 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR000239 - GPCR_kinase
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR000342 - Regulat_G_prot_signal
IPR016137 - Regulat_G_prot_signal_superfam
IPR002290 - Ser/Thr_dual-sp_kinase_dom

Pfam Domains:
PF00069 - Protein kinase domain
PF00615 - Regulator of G protein signaling domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF08257 - Sulfakinin family

SCOP Domains:
48097 - Regulator of G-protein signaling, RGS
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on P34947
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004703 G-protein coupled receptor kinase activity
GO:0005080 protein kinase C binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0005543 phospholipid binding
GO:0008289 lipid binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0047696 beta-adrenergic receptor kinase activity

Biological Process:
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007188 adenylate cyclase-modulating G-protein coupled receptor signaling pathway
GO:0007217 tachykinin receptor signaling pathway
GO:0008277 regulation of G-protein coupled receptor protein signaling pathway
GO:0008284 positive regulation of cell proliferation
GO:0016055 Wnt signaling pathway
GO:0016310 phosphorylation
GO:0043066 negative regulation of apoptotic process
GO:0045444 fat cell differentiation
GO:0046777 protein autophosphorylation
GO:0051726 regulation of cell cycle

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016607 nuclear speck
GO:0031965 nuclear membrane


-  Descriptions from all associated GenBank mRNAs
  BC018116 - Homo sapiens G protein-coupled receptor kinase 5, mRNA (cDNA clone IMAGE:3912936), with apparent retained intron.
BC064506 - Homo sapiens G protein-coupled receptor kinase 5, mRNA (cDNA clone MGC:71228 IMAGE:6482467), complete cds.
L15388 - Human G protein-coupled receptor kinase (GRK5) mRNA, complete cds.
AK309761 - Homo sapiens cDNA, FLJ99802.
AK313012 - Homo sapiens cDNA, FLJ93477, highly similar to Homo sapiens G protein-coupled receptor kinase 5 (GRK5), mRNA.
AB590773 - Synthetic construct DNA, clone: pFN21AE2011, Homo sapiens GRK5 gene for G protein-coupled receptor kinase 5, without stop codon, in Flexi system.
AK298261 - Homo sapiens cDNA FLJ57156 complete cds, highly similar to G protein-coupled receptor kinase 5 (EC 2.7.11.16).
JD368947 - Sequence 349971 from Patent EP1572962.
JC506661 - Sequence 29 from Patent EP2733220.
JC737773 - Sequence 29 from Patent WO2014075939.
JC506666 - Sequence 34 from Patent EP2733220.
JC737778 - Sequence 34 from Patent WO2014075939.
JC506674 - Sequence 42 from Patent EP2733220.
JC737786 - Sequence 42 from Patent WO2014075939.
JC506688 - Sequence 56 from Patent EP2733220.
JC737800 - Sequence 56 from Patent WO2014075939.
JD211411 - Sequence 192435 from Patent EP1572962.
JD186845 - Sequence 167869 from Patent EP1572962.
JD391653 - Sequence 372677 from Patent EP1572962.
JD476274 - Sequence 457298 from Patent EP1572962.
JD559372 - Sequence 540396 from Patent EP1572962.
AK301450 - Homo sapiens cDNA FLJ51728 complete cds, highly similar to G protein-coupled receptor kinase 5 (EC 2.7.11.16).
BC114448 - Homo sapiens G protein-coupled receptor kinase 5, mRNA (cDNA clone IMAGE:40001324), complete cds.
JD104311 - Sequence 85335 from Patent EP1572962.
JD439897 - Sequence 420921 from Patent EP1572962.
JD223208 - Sequence 204232 from Patent EP1572962.
JD281826 - Sequence 262850 from Patent EP1572962.
LF211388 - JP 2014500723-A/18891: Polycomb-Associated Non-Coding RNAs.
LF346036 - JP 2014500723-A/153539: Polycomb-Associated Non-Coding RNAs.
AF370369 - Homo sapiens FP2025 mRNA, complete cds.
AK097099 - Homo sapiens cDNA FLJ39780 fis, clone SPLEN2002007.
JD146117 - Sequence 127141 from Patent EP1572962.
JD241695 - Sequence 222719 from Patent EP1572962.
JD040072 - Sequence 21096 from Patent EP1572962.
JD317620 - Sequence 298644 from Patent EP1572962.
JD059432 - Sequence 40456 from Patent EP1572962.
JD148591 - Sequence 129615 from Patent EP1572962.
JD114025 - Sequence 95049 from Patent EP1572962.
JD093175 - Sequence 74199 from Patent EP1572962.
JD561799 - Sequence 542823 from Patent EP1572962.
JD530619 - Sequence 511643 from Patent EP1572962.
JD275472 - Sequence 256496 from Patent EP1572962.
JD526849 - Sequence 507873 from Patent EP1572962.
JD146858 - Sequence 127882 from Patent EP1572962.
JD536599 - Sequence 517623 from Patent EP1572962.
JD070320 - Sequence 51344 from Patent EP1572962.
JD071892 - Sequence 52916 from Patent EP1572962.
JD470421 - Sequence 451445 from Patent EP1572962.
JD555712 - Sequence 536736 from Patent EP1572962.
JD421087 - Sequence 402111 from Patent EP1572962.
JD081544 - Sequence 62568 from Patent EP1572962.
JD499419 - Sequence 480443 from Patent EP1572962.
JD509686 - Sequence 490710 from Patent EP1572962.
JD242429 - Sequence 223453 from Patent EP1572962.
JD195520 - Sequence 176544 from Patent EP1572962.
JD140865 - Sequence 121889 from Patent EP1572962.
JD193851 - Sequence 174875 from Patent EP1572962.
JD314120 - Sequence 295144 from Patent EP1572962.
JD083752 - Sequence 64776 from Patent EP1572962.
JD086191 - Sequence 67215 from Patent EP1572962.
JD127804 - Sequence 108828 from Patent EP1572962.
JD404660 - Sequence 385684 from Patent EP1572962.
JD173670 - Sequence 154694 from Patent EP1572962.
JD058183 - Sequence 39207 from Patent EP1572962.
JD448836 - Sequence 429860 from Patent EP1572962.
JD433505 - Sequence 414529 from Patent EP1572962.
JD566254 - Sequence 547278 from Patent EP1572962.
JD100306 - Sequence 81330 from Patent EP1572962.
JD139585 - Sequence 120609 from Patent EP1572962.
JD458849 - Sequence 439873 from Patent EP1572962.
JD564019 - Sequence 545043 from Patent EP1572962.
JD338271 - Sequence 319295 from Patent EP1572962.
LF346037 - JP 2014500723-A/153540: Polycomb-Associated Non-Coding RNAs.
MA581613 - JP 2018138019-A/153539: Polycomb-Associated Non-Coding RNAs.
MA581614 - JP 2018138019-A/153540: Polycomb-Associated Non-Coding RNAs.
MA446965 - JP 2018138019-A/18891: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P34947 (Reactome details) participates in the following event(s):

R-HSA-416510 GRK5 sequesters activated Gq
R-HSA-8982645 GRKs bind ADRB2:Catecholamine
R-HSA-8982641 ADRB2:GRK complex dissociates to Phosphorylated ADRB2
R-HSA-8851797 ADRB2 in ADRB2:GRK complex is phosphorylated
R-HSA-416476 G alpha (q) signalling events
R-HSA-418555 G alpha (s) signalling events
R-HSA-388396 GPCR downstream signalling
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: D3DRD0, ENST00000392870.1, ENST00000392870.2, GPRK5, GRK5_HUMAN, NM_005308, P34947, Q5T059, uc318vky.1, uc318vky.2
UCSC ID: ENST00000392870.3_4
RefSeq Accession: NM_005308.3
Protein: P34947 (aka GRK5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.