Human Gene GPR143 (ENST00000467482.6_7) from GENCODE V47lift37
  Description: G protein-coupled receptor 143 (from RefSeq NM_000273.3)
Gencode Transcript: ENST00000467482.6_7
Gencode Gene: ENSG00000101850.13_10
Transcript (Including UTRs)
   Position: hg19 chrX:9,693,386-9,733,887 Size: 40,502 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chrX:9,693,786-9,733,857 Size: 40,072 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:9,693,386-9,733,887)mRNA (may differ from genome)Protein (404 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GP143_HUMAN
DESCRIPTION: RecName: Full=G-protein coupled receptor 143; AltName: Full=Ocular albinism type 1 protein;
FUNCTION: Receptor for tyrosine, L-DOPA and dopamine. After binding to L-DOPA, stimulates Ca(2+) influx into the cytoplasm, increases secretion of the neurotrophic factor SERPINF1 and relocalizes beta arrestin at the plasma membrane; this ligand- dependent signaling occurs through a G(q)-mediated pathway in melanocytic cells. Its activity is mediated by G proteins which activate the phosphoinositide signaling pathway. Plays also a role as an intracellular G protein-coupled receptor involved in melanosome biogenesis, organization and transport.
SUBUNIT: Interacts with heterotrimeric G(i) proteins. Interacts with ARRB1 and ARRB2. Interacts with MLANA.
INTERACTION: Q16655:MLANA; NbExp=1; IntAct=EBI-2509708, EBI-2509726;
SUBCELLULAR LOCATION: Golgi apparatus. Melanosome membrane; Multi- pass membrane protein. Lysosome membrane; Multi-pass membrane protein. Apical cell membrane; Multi-pass membrane protein. Note=Distributed throughout the endo-melanosomal system but most of endogenous protein is localized in unpigmented stage II melanosomes. Its expression on the apical cell membrane is sensitive to tyrosine.
TISSUE SPECIFICITY: Expressed at high levels in the retina, including the retinal pigment epithelium (RPE), and in melanocytes. Weak expression is observed in brain and adrenal gland.
DOMAIN: The cytoplasmic domain 3 and the C-terminus tail domain contain the lysosomal sorting signals and are necessary and sufficient for intracellular retention and delivery to lysosomal and melanosomal, respectively in melanocytic and non-melanocytic cells.
PTM: Glycosylated.
PTM: Phosphorylated.
DISEASE: Defects in GPR143 are the cause of albinism ocular type 1 (OA1) [MIM:300500]; also known as Nettleship-Falls type ocular albinism. Form of albinism affecting only the eye. Pigment of the hair and skin is normal or only slightly diluted. Eyes may be severely affected with photophobia and reduced visual acuity. Nystagmus or strabismus are often associated. The irides and fundus are depigmented.
DISEASE: Defects in GPR143 are the cause of Nystagmus congenital X-linked type 6 (NYS6) [MIM:300814]. It is a condition defined as conjugated, spontaneous and involuntary ocular oscillations that appear at birth or during the first three months of life. Other associated features may include mildly decreased visual acuity, strabismus, astigmatism, and occasionally head nodding.
SIMILARITY: Belongs to the G-protein coupled receptor OA family.
SEQUENCE CAUTION: Sequence=AAH68977.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAA88742.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=EAW98773.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
WEB RESOURCE: Name=Mutations of the OA1 gene; Note=Retina International's Scientific Newsletter; URL="http://www.retina-international.org/files/sci-news/oa1mut.htm";
WEB RESOURCE: Name=Albinism database (ADB); Note=GPR143 mutations; URL="http://albinismdb.med.umn.edu/oa1mut.html";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/GPR143";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GPR143
Diseases sorted by gene-association score: ocular albinism, type i, nettleship-falls type* (1550), nystagmus 6, congenital, x-linked* (1300), ocular albinism, x-linked* (518), ocular albinism (52), albinism (48), congenital nystagmus (26), pathologic nystagmus (13), x-linked infantile nystagmus (13), strabismus (8), ocular motility disease (6), astigmatism (5), kallmann syndrome (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.92 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 49.17 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.2030-0.107 Picture PostScript Text
3' UTR -111.90400-0.280 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001414 - Ocular_alb1

Pfam Domains:
PF00002 - 7 transmembrane receptor (Secretin family)
PF02101 - Ocular albinism type 1 protein

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on P51810
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0005515 protein binding
GO:0035240 dopamine binding
GO:0035643 L-DOPA receptor activity
GO:0072544 L-DOPA binding
GO:0072545 tyrosine binding

Biological Process:
GO:0006726 eye pigment biosynthetic process
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007218 neuropeptide signaling pathway
GO:0007601 visual perception
GO:0032400 melanosome localization
GO:0032402 melanosome transport
GO:0032438 melanosome organization
GO:0035584 calcium-mediated signaling using intracellular calcium source
GO:0048015 phosphatidylinositol-mediated signaling
GO:0050848 regulation of calcium-mediated signaling
GO:1902908 regulation of melanosome transport
GO:1903056 regulation of melanosome organization

Cellular Component:
GO:0005737 cytoplasm
GO:0005764 lysosome
GO:0005765 lysosomal membrane
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016324 apical plasma membrane
GO:0033162 melanosome membrane
GO:0042470 melanosome


-  Descriptions from all associated GenBank mRNAs
  BC015657 - Homo sapiens cDNA clone IMAGE:4841294, containing frame-shift errors.
BC068977 - Homo sapiens G protein-coupled receptor 143, mRNA (cDNA clone MGC:75119 IMAGE:6162826), complete cds.
Z48804 - H.sapiens mRNA (ocular albinism type 1 related).
JD491124 - Sequence 472148 from Patent EP1572962.
JD317748 - Sequence 298772 from Patent EP1572962.
JD043667 - Sequence 24691 from Patent EP1572962.
JD354969 - Sequence 335993 from Patent EP1572962.
JD552092 - Sequence 533116 from Patent EP1572962.
JD280669 - Sequence 261693 from Patent EP1572962.
JD166422 - Sequence 147446 from Patent EP1572962.
JD550080 - Sequence 531104 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P51810 (Reactome details) participates in the following event(s):

R-HSA-8851298 GPR143 binds L-Dopa
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-375280 Amine ligand-binding receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000467482.1, ENST00000467482.2, ENST00000467482.3, ENST00000467482.4, ENST00000467482.5, GP143_HUMAN, NM_000273, OA1, P51810, Q6NTI7, uc321jyl.1, uc321jyl.2
UCSC ID: ENST00000467482.6_7
RefSeq Accession: NM_000273.3
Protein: P51810 (aka GP143_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene GPR143:
oca-oa-ov (Oculocutaneous Albinism and Ocular Albinism Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.