Human Gene GPR12 (ENST00000405846.5_7) from GENCODE V47lift37
  Description: G protein-coupled receptor 12 (from RefSeq NM_005288.4)
Gencode Transcript: ENST00000405846.5_7
Gencode Gene: ENSG00000132975.8_9
Transcript (Including UTRs)
   Position: hg19 chr13:27,329,337-27,334,923 Size: 5,587 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr13:27,332,960-27,333,964 Size: 1,005 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:27,329,337-27,334,923)mRNA (may differ from genome)Protein (334 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GPR12_HUMAN
DESCRIPTION: RecName: Full=G-protein coupled receptor 12;
FUNCTION: Promotes neurite outgrowth and blocks myelin inhibition in neurons (By similarity). Receptor with constitutive G(s) signaling activity that stimulates cyclic AMP production.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (Probable).
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
CAUTION: Was originally (PubMed:12220620) thought to be a receptor for sphingosine 1-phosphate. It has been demonstrated that it is not the case in human (PubMed:19286662).

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.79 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 59.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -99.50223-0.446 Picture PostScript Text
3' UTR -960.103623-0.265 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR000599 - GPR12_rcpt
IPR000723 - GPR_orph_rcpt

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)
PF10320 - Serpentine type 7TM GPCR chemoreceptor Srsx

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on P47775
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0031210 phosphatidylcholine binding

Biological Process:
GO:0006874 cellular calcium ion homeostasis
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  JD179063 - Sequence 160087 from Patent EP1572962.
JD179064 - Sequence 160088 from Patent EP1572962.
JD421446 - Sequence 402470 from Patent EP1572962.
JD514910 - Sequence 495934 from Patent EP1572962.
AK055229 - Homo sapiens cDNA FLJ30667 fis, clone FCBBF1000671.
JD420244 - Sequence 401268 from Patent EP1572962.
AK311107 - Homo sapiens cDNA, FLJ18149.
AK290220 - Homo sapiens cDNA FLJ78165 complete cds, highly similar to Homo sapiens G protein-coupled receptor 12 (GPR12), mRNA.
AK294378 - Homo sapiens cDNA FLJ52157 complete cds, highly similar to Probable G-protein coupled receptor 12.
BC112144 - Homo sapiens G protein-coupled receptor 12, mRNA (cDNA clone MGC:138349 IMAGE:8327612), complete cds.
BC112146 - Homo sapiens G protein-coupled receptor 12, mRNA (cDNA clone MGC:138351 IMAGE:8327614), complete cds.
HQ995525 - Homo sapiens G protein-coupled receptor 12 (GPR12) mRNA, complete cds.
AK312602 - Homo sapiens cDNA, FLJ92979, Homo sapiens G protein-coupled receptor 12 (GPR12), mRNA.
BC067448 - Homo sapiens G protein-coupled receptor 12, mRNA (cDNA clone IMAGE:6971726), partial cds.
BC067449 - Homo sapiens G protein-coupled receptor 12, mRNA (cDNA clone IMAGE:6971727), partial cds.
BC067450 - Homo sapiens G protein-coupled receptor 12, mRNA (cDNA clone IMAGE:6971728), partial cds.
BC067451 - Homo sapiens G protein-coupled receptor 12, mRNA (cDNA clone IMAGE:6971729), partial cds.
BC067452 - Homo sapiens G protein-coupled receptor 12, mRNA (cDNA clone IMAGE:6971730), partial cds.
KJ891280 - Synthetic construct Homo sapiens clone ccsbBroadEn_00674 GPR12 gene, encodes complete protein.
AK307756 - Homo sapiens cDNA, FLJ97704.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000405846.1, ENST00000405846.2, ENST00000405846.3, ENST00000405846.4, GPR12_HUMAN, NM_005288, P47775, Q5T8P3, uc319dey.1, uc319dey.2
UCSC ID: ENST00000405846.5_7
RefSeq Accession: NM_005288.4
Protein: P47775 (aka GPR12_HUMAN or GP12_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.