Human Gene GPAM (ENST00000348367.9_7) from GENCODE V47lift37
  Description: glycerol-3-phosphate acyltransferase, mitochondrial, transcript variant 2 (from RefSeq NM_020918.6)
Gencode Transcript: ENST00000348367.9_7
Gencode Gene: ENSG00000119927.14_9
Transcript (Including UTRs)
   Position: hg19 chr10:113,909,623-113,943,523 Size: 33,901 Total Exon Count: 22 Strand: -
Coding Region
   Position: hg19 chr10:113,913,308-113,941,542 Size: 28,235 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:113,909,623-113,943,523)mRNA (may differ from genome)Protein (828 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GPAT1_HUMAN
DESCRIPTION: RecName: Full=Glycerol-3-phosphate acyltransferase 1, mitochondrial; Short=GPAT-1; EC=2.3.1.15; Flags: Precursor;
FUNCTION: Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate, an essential step in glycerolipid biosynthesis.
CATALYTIC ACTIVITY: Acyl-CoA + sn-glycerol 3-phosphate = CoA + 1- acyl-sn-glycerol 3-phosphate.
PATHWAY: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 1/3.
SUBCELLULAR LOCATION: Mitochondrion outer membrane; Multi-pass membrane protein (By similarity).
DOMAIN: The HXXXXD motif is essential for acyltransferase activity and may constitute the binding site for the phosphate moiety of the glycerol-3-phosphate (By similarity).
SIMILARITY: Belongs to the GPAT/DAPAT family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 41.98 RPKM in Adipose - Visceral (Omentum)
Total median expression: 252.08 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -68.10200-0.340 Picture PostScript Text
3' UTR -987.103685-0.268 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002123 - Acyltransferase
IPR022284 - G3P_O-AcylTrfase

Pfam Domains:
PF01553 - Acyltransferase
PF19277 - Glycerol-3-phosphate acyltransferase C-terminal region

SCOP Domains:
69593 - Glycerol-3-phosphate (1)-acyltransferase

ModBase Predicted Comparative 3D Structure on Q9HCL2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004366 glycerol-3-phosphate O-acyltransferase activity
GO:0008374 O-acyltransferase activity
GO:0016740 transferase activity
GO:0016746 transferase activity, transferring acyl groups

Biological Process:
GO:0006629 lipid metabolic process
GO:0006631 fatty acid metabolic process
GO:0006637 acyl-CoA metabolic process
GO:0006641 triglyceride metabolic process
GO:0006650 glycerophospholipid metabolic process
GO:0006654 phosphatidic acid biosynthetic process
GO:0008152 metabolic process
GO:0008654 phospholipid biosynthetic process
GO:0009749 response to glucose
GO:0016024 CDP-diacylglycerol biosynthetic process
GO:0019432 triglyceride biosynthetic process
GO:0033146 regulation of intracellular estrogen receptor signaling pathway
GO:0040018 positive regulation of multicellular organism growth
GO:0042104 positive regulation of activated T cell proliferation
GO:0044255 cellular lipid metabolic process
GO:0045540 regulation of cholesterol biosynthetic process
GO:0050707 regulation of cytokine secretion
GO:0051607 defense response to virus
GO:0055089 fatty acid homeostasis
GO:0055091 phospholipid homeostasis
GO:0070236 negative regulation of activation-induced cell death of T cells
GO:0070970 interleukin-2 secretion

Cellular Component:
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AL833061 - Homo sapiens mRNA; cDNA DKFZp451B1115 (from clone DKFZp451B1115); complete cds.
AK025752 - Homo sapiens cDNA: FLJ22099 fis, clone HEP17080.
AB046780 - Homo sapiens mRNA for KIAA1560 protein, partial cds.
BX647451 - Homo sapiens mRNA; cDNA DKFZp451I137 (from clone DKFZp451I137).
AL833093 - Homo sapiens mRNA; cDNA DKFZp451P0819 (from clone DKFZp451P0819); complete cds.
AK172782 - Homo sapiens cDNA FLJ23943 fis, clone HEP04035, highly similar to Glycerol-3-phosphate acyltransferase, mitochondrial precursor (EC 2.3.1.15).
BC030783 - Homo sapiens glycerol-3-phosphate acyltransferase, mitochondrial, mRNA (cDNA clone MGC:26846 IMAGE:4821342), complete cds.
JD282427 - Sequence 263451 from Patent EP1572962.
JD349877 - Sequence 330901 from Patent EP1572962.
JD239382 - Sequence 220406 from Patent EP1572962.
JD081729 - Sequence 62753 from Patent EP1572962.
AK172799 - Homo sapiens cDNA FLJ23960 fis, clone HEP14724, highly similar to Glycerol-3-phosphate acyltransferase, mitochondrial precursor (EC 2.3.1.15).
JD263709 - Sequence 244733 from Patent EP1572962.
JD371658 - Sequence 352682 from Patent EP1572962.
JD526847 - Sequence 507871 from Patent EP1572962.
KJ899364 - Synthetic construct Homo sapiens clone ccsbBroadEn_08758 GPAM gene, encodes complete protein.
KR709479 - Synthetic construct Homo sapiens clone CCSBHm_00002595 GPAM (GPAM) mRNA, encodes complete protein.
AB587354 - Synthetic construct DNA, clone: pF1KA1560, Homo sapiens GPAM gene for glycerol-3-phosphate acyltransferase, mitochondrial, without stop codon, in Flexi system.
AM392613 - Synthetic construct Homo sapiens clone IMAGE:100002211 for hypothetical protein (GPAM gene).
AL832464 - Homo sapiens mRNA; cDNA DKFZp313H071 (from clone DKFZp313H071).
CU689008 - Synthetic construct Homo sapiens gateway clone IMAGE:100020466 5' read GPAM mRNA.
JD404526 - Sequence 385550 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-5667 - CDP-diacylglycerol biosynthesis
TRIGLSYN-PWY - diacylglycerol and triacylglycerol biosynthesis

Reactome (by CSHL, EBI, and GO)

Protein Q9HCL2 (Reactome details) participates in the following event(s):

R-HSA-75886 glycerol 3-phosphate + acyl-CoA => 1-acylglycerol 3-phosphate + CoASH [mitochondrial membrane-associated]
R-HSA-1482695 G3P is acylated to 1-acyl LPA by GPAM/GPAT2 (OM)
R-HSA-2426168 Activation of gene expression by SREBF (SREBP)
R-HSA-8931987 RUNX1 regulates estrogen receptor mediated transcription
R-HSA-9018519 Estrogen-dependent gene expression
R-HSA-1655829 Regulation of cholesterol biosynthesis by SREBP (SREBF)
R-HSA-8878171 Transcriptional regulation by RUNX1
R-HSA-8939211 ESR-mediated signaling
R-HSA-75109 Triglyceride biosynthesis
R-HSA-1483166 Synthesis of PA
R-HSA-8957322 Metabolism of steroids
R-HSA-212436 Generic Transcription Pathway
R-HSA-9006931 Signaling by Nuclear Receptors
R-HSA-8979227 Triglyceride metabolism
R-HSA-1483206 Glycerophospholipid biosynthesis
R-HSA-556833 Metabolism of lipids
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-162582 Signal Transduction
R-HSA-1483257 Phospholipid metabolism
R-HSA-1430728 Metabolism
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000348367.1, ENST00000348367.2, ENST00000348367.3, ENST00000348367.4, ENST00000348367.5, ENST00000348367.6, ENST00000348367.7, ENST00000348367.8, GPAM , GPAT1, GPAT1_HUMAN, KIAA1560, NM_020918, Q5VW51, Q86TA3, Q9HCL2, uc317xqy.1, uc317xqy.2
UCSC ID: ENST00000348367.9_7
RefSeq Accession: NM_001244949.2
Protein: Q9HCL2 (aka GPAT1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.