Human Gene GLRX3 (ENST00000331244.10_4) from GENCODE V47lift37
  Description: glutaredoxin 3, transcript variant 2 (from RefSeq NM_006541.5)
Gencode Transcript: ENST00000331244.10_4
Gencode Gene: ENSG00000108010.12_7
Transcript (Including UTRs)
   Position: hg19 chr10:131,934,655-131,977,936 Size: 43,282 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr10:131,934,685-131,977,656 Size: 42,972 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:131,934,655-131,977,936)mRNA (may differ from genome)Protein (335 aa)
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-  Comments and Description Text from UniProtKB
  ID: GLRX3_HUMAN
DESCRIPTION: RecName: Full=Glutaredoxin-3; AltName: Full=PKC-interacting cousin of thioredoxin; Short=PICOT; AltName: Full=PKC-theta-interacting protein; Short=PKCq-interacting protein; AltName: Full=Thioredoxin-like protein 2;
FUNCTION: Critical negative regulator of cardiac hypertrophy and a positive inotropic regulator (By similarity). May play a role in regulating the function of the thioredoxin system. Does not posses any thyoredoxin activity since it lacks the conserved motif that is essential for catalytic activity.
SUBUNIT: Monomer and homodimer; the homodimer is probably linked by 2 2Fe-2S clusters that may serve as a redox sensor. The monomer interacts with other proteins. Interacts (via N-terminus) with PRKCQ/PKC-theta. Interacts (via C-terminus) with CSRP3 (By similarity). Interacts with CSRP2 (By similarity).
INTERACTION: Q04759:PRKCQ; NbExp=5; IntAct=EBI-374781, EBI-374762;
SUBCELLULAR LOCATION: Cytoplasm, cell cortex. Cytoplasm, myofibril, sarcomere, Z line (By similarity). Note=Under the plasma membrane. After PMA stimulation, GLRX3 and PRKCQ/PKC-theta translocate to a more extended submembrane area. In the Z line, found associated with CSRP3 (By similarity).
TISSUE SPECIFICITY: Expressed in heart, spleen, testis and, to a lower extent, in thymus and peripheral blood leukocytes. Weakly expressed in lung, placenta, colon and small intestine.
DOMAIN: The thioredoxin domain lacks the two redox-active cysteines. This strongly suggests that it lacks thioredoxin activity.
SIMILARITY: Contains 2 glutaredoxin domains.
SIMILARITY: Contains 1 thioredoxin domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 32.16 RPKM in Testis
Total median expression: 724.95 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.6030-0.253 Picture PostScript Text
3' UTR -50.00280-0.179 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002109 - Glutaredoxin
IPR004480 - Monothiol_GRX-rel
IPR012336 - Thioredoxin-like_fold
IPR013766 - Thioredoxin_domain

Pfam Domains:
PF00085 - Thioredoxin
PF00462 - Glutaredoxin
PF02114 - Phosducin
PF02966 - Mitosis protein DIM1

SCOP Domains:
52172 - CheY-like
52833 - Thioredoxin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DIY - NMR MuPIT 2WZ9 - X-ray MuPIT 2YAN - X-ray MuPIT 3ZYW - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O76003
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005080 protein kinase C binding
GO:0005515 protein binding
GO:0009055 electron carrier activity
GO:0015035 protein disulfide oxidoreductase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding

Biological Process:
GO:0002026 regulation of the force of heart contraction
GO:0010614 negative regulation of cardiac muscle hypertrophy
GO:0022900 electron transport chain
GO:0044571 [2Fe-2S] cluster assembly
GO:0045454 cell redox homeostasis
GO:0055114 oxidation-reduction process
GO:0097428 protein maturation by iron-sulfur cluster transfer

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005938 cell cortex
GO:0030018 Z disc
GO:0030425 dendrite


-  Descriptions from all associated GenBank mRNAs
  LF207948 - JP 2014500723-A/15451: Polycomb-Associated Non-Coding RNAs.
HM005388 - Homo sapiens clone HTL-T-75 testicular tissue protein Li 75 mRNA, complete cds.
BC005289 - Homo sapiens glutaredoxin 3, mRNA (cDNA clone MGC:12349 IMAGE:3686411), complete cds.
AK022131 - Homo sapiens cDNA FLJ12069 fis, clone HEMBB1002342, highly similar to Thioredoxin-like protein 2.
AK021926 - Homo sapiens cDNA FLJ11864 fis, clone HEMBA1006941, highly similar to Thioredoxin-like protein 2.
AF118652 - Homo sapiens PKCq-interacting protein PICOT (PICOT) mRNA, complete cds.
AF118649 - Homo sapiens PKCq-interacting protein PICOT (PICOT) mRNA, complete cds.
AK225609 - Homo sapiens mRNA for Thioredoxin-like protein 2 variant, clone: PNC05528.
KJ893067 - Synthetic construct Homo sapiens clone ccsbBroadEn_02461 GLRX3 gene, encodes complete protein.
JD177344 - Sequence 158368 from Patent EP1572962.
AJ010841 - Homo sapiens mRNA for putative thioredoxin-like protein.
AB463691 - Synthetic construct DNA, clone: pF1KB6414, Homo sapiens GLRX3 gene for glutaredoxin 3, without stop codon, in Flexi system.
LF370414 - JP 2014500723-A/177917: Polycomb-Associated Non-Coding RNAs.
JD024989 - Sequence 6013 from Patent EP1572962.
JD026882 - Sequence 7906 from Patent EP1572962.
BC014372 - Homo sapiens glutaredoxin 3, mRNA (cDNA clone IMAGE:3995828), partial cds.
JD031094 - Sequence 12118 from Patent EP1572962.
JD026584 - Sequence 7608 from Patent EP1572962.
LF370422 - JP 2014500723-A/177925: Polycomb-Associated Non-Coding RNAs.
CU676971 - Synthetic construct Homo sapiens gateway clone IMAGE:100018004 5' read GLRX3 mRNA.
KJ902125 - Synthetic construct Homo sapiens clone ccsbBroadEn_11519 GLRX3 gene, encodes complete protein.
LF370431 - JP 2014500723-A/177934: Polycomb-Associated Non-Coding RNAs.
LF370434 - JP 2014500723-A/177937: Polycomb-Associated Non-Coding RNAs.
LF370436 - JP 2014500723-A/177939: Polycomb-Associated Non-Coding RNAs.
LF370437 - JP 2014500723-A/177940: Polycomb-Associated Non-Coding RNAs.
LF370439 - JP 2014500723-A/177942: Polycomb-Associated Non-Coding RNAs.
MA605991 - JP 2018138019-A/177917: Polycomb-Associated Non-Coding RNAs.
MA605999 - JP 2018138019-A/177925: Polycomb-Associated Non-Coding RNAs.
MA606008 - JP 2018138019-A/177934: Polycomb-Associated Non-Coding RNAs.
MA606011 - JP 2018138019-A/177937: Polycomb-Associated Non-Coding RNAs.
MA606013 - JP 2018138019-A/177939: Polycomb-Associated Non-Coding RNAs.
MA606014 - JP 2018138019-A/177940: Polycomb-Associated Non-Coding RNAs.
MA606016 - JP 2018138019-A/177942: Polycomb-Associated Non-Coding RNAs.
MA443525 - JP 2018138019-A/15451: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B3KMP7, B3KMQ5, D3DRG2, ENST00000331244.1, ENST00000331244.2, ENST00000331244.3, ENST00000331244.4, ENST00000331244.5, ENST00000331244.6, ENST00000331244.7, ENST00000331244.8, ENST00000331244.9, GLRX3_HUMAN, HUSSY-22, NM_006541, O76003, PICOT , Q5JV01, Q96CE0, Q9P1B0, Q9P1B1, TXNL2, uc317tdv.1, uc317tdv.2
UCSC ID: ENST00000331244.10_4
RefSeq Accession: NM_006541.5
Protein: O76003 (aka GLRX3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.