Human Gene GLMN (ENST00000370360.8_7) from GENCODE V47lift37
  Description: glomulin, FKBP associated protein, transcript variant 1 (from RefSeq NM_053274.3)
Gencode Transcript: ENST00000370360.8_7
Gencode Gene: ENSG00000174842.17_12
Transcript (Including UTRs)
   Position: hg19 chr1:92,711,959-92,764,544 Size: 52,586 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg19 chr1:92,712,087-92,763,556 Size: 51,470 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:92,711,959-92,764,544)mRNA (may differ from genome)Protein (594 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GLMN_HUMAN
DESCRIPTION: RecName: Full=Glomulin; AltName: Full=FK506-binding protein-associated protein; Short=FAP; AltName: Full=FKBP-associated protein;
FUNCTION: Essential for normal development of the vasculature. May represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12. May function as an membrane anchoring protein. Isoform 1 may stimulate the p70S6K pathway. Isoform 2 may inhibit cell proliferation and increase IL2 production.
SUBUNIT: Monomer. Isoform 1 interacts with notphosphorylated MET and is released upon receptor phosphorylation. Isoform 2 interacts with FKBP59 and FKBP12. Isoform 1 is part of a SCF-like complex consisting of CUL7, RBX1, SKP1, FBXW8 and GLMN isoform 1.
TISSUE SPECIFICITY: Ubiquitous.
PTM: Phosphorylated on tyrosine residues.
DISEASE: Defects in GLMN are the cause of glomuvenous malformations (GVMs) [MIM:138000]. GVMs are characterized by the presence of smooth-muscle-like glomus cells in the media surrounding distended vascular lumens.
MISCELLANEOUS: Rapamycin and FK506 abolish the interaction in a dose dependent manner.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/GLMN";
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/GLMNID43022ch1p22.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GLMN
Diseases sorted by gene-association score: glomuvenous malformations* (1402), glomangioma (38), human venous malformation (20), cardiovascular organ benign neoplasm (18), benign perivascular tumor (18), familial glomangioma (18), glomangiomatosis (17), gorham's disease (16), klippel-trenaunay-weber syndrome (15), venous malformations, multiple cutaneous and mucosal (9), histiocytoid hemangioma (9)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.03 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 175.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -27.6093-0.297 Picture PostScript Text
3' UTR -8.60128-0.067 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019516 - Glomulin
IPR013877 - YAP-bd/Alf4/glomulin

Pfam Domains:
PF08568 - Uncharacterised protein family, YAP/Alf4/glomulin

SCOP Domains:
48371 - ARM repeat

Protein Data Bank (PDB) 3-D Structure
MuPIT help
4F52 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q92990
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005171 hepatocyte growth factor receptor binding
GO:0005515 protein binding
GO:0031625 ubiquitin protein ligase binding
GO:0055105 ubiquitin-protein transferase inhibitor activity

Biological Process:
GO:0001570 vasculogenesis
GO:0001843 neural tube closure
GO:0031397 negative regulation of protein ubiquitination
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0040029 regulation of gene expression, epigenetic
GO:0042130 negative regulation of T cell proliferation
GO:0042327 positive regulation of phosphorylation
GO:0042692 muscle cell differentiation
GO:0045086 positive regulation of interleukin-2 biosynthetic process
GO:0050715 positive regulation of cytokine secretion
GO:0072359 circulatory system development

Cellular Component:
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0031461 cullin-RING ubiquitin ligase complex
GO:0031462 Cul2-RING ubiquitin ligase complex
GO:0031463 Cul3-RING ubiquitin ligase complex
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex


-  Descriptions from all associated GenBank mRNAs
  AK295971 - Homo sapiens cDNA FLJ60587 complete cds, highly similar to Glomulin.
U73704 - Homo sapiens 48 kDa FKBP-associated protein FAP48 mRNA, complete cds.
BC001257 - Homo sapiens glomulin, FKBP associated protein, mRNA (cDNA clone MGC:5001 IMAGE:3454182), complete cds.
AJ347709 - Homo sapiens mRNA for FKBP-associated protein.
JD294300 - Sequence 275324 from Patent EP1572962.
JD294299 - Sequence 275323 from Patent EP1572962.
AJ302735 - Homo sapiens mRNA for glomulin (GLOMULIN gene).
KJ893235 - Synthetic construct Homo sapiens clone ccsbBroadEn_02629 GLMN gene, encodes complete protein.
AB590607 - Synthetic construct DNA, clone: pFN21AE2018, Homo sapiens GLMN gene for glomulin, FKBP associated protein, without stop codon, in Flexi system.
JD312490 - Sequence 293514 from Patent EP1572962.
JD372116 - Sequence 353140 from Patent EP1572962.
JD043582 - Sequence 24606 from Patent EP1572962.
JD048044 - Sequence 29068 from Patent EP1572962.
JD306055 - Sequence 287079 from Patent EP1572962.
JD406157 - Sequence 387181 from Patent EP1572962.
JD205891 - Sequence 186915 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q92990 (Reactome details) participates in the following event(s):

R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000370360.1, ENST00000370360.2, ENST00000370360.3, ENST00000370360.4, ENST00000370360.5, ENST00000370360.6, ENST00000370360.7, FAP48 , FAP68 , GLMN_HUMAN, NM_053274, Q5VVC3, Q92990, Q9BVE8, uc318ihx.1, uc318ihx.2, VMGLOM
UCSC ID: ENST00000370360.8_7
RefSeq Accession: NM_053274.3
Protein: Q92990 (aka GLMN_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.