Human Gene GFPT1 (ENST00000357308.9_8) from GENCODE V47lift37
  Description: glutamine--fructose-6-phosphate transaminase 1, transcript variant 1 (from RefSeq NM_001244710.2)
Gencode Transcript: ENST00000357308.9_8
Gencode Gene: ENSG00000198380.13_9
Transcript (Including UTRs)
   Position: hg19 chr2:69,546,912-69,614,359 Size: 67,448 Total Exon Count: 20 Strand: -
Coding Region
   Position: hg19 chr2:69,553,321-69,614,203 Size: 60,883 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:69,546,912-69,614,359)mRNA (may differ from genome)Protein (699 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GFPT1_HUMAN
DESCRIPTION: RecName: Full=Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1; EC=2.6.1.16; AltName: Full=D-fructose-6-phosphate amidotransferase 1; AltName: Full=Glutamine:fructose-6-phosphate amidotransferase 1; Short=GFAT 1; Short=GFAT1; AltName: Full=Hexosephosphate aminotransferase 1;
FUNCTION: Controls the flux of glucose into the hexosamine pathway. Most likely involved in regulating the availability of precursors for N- and O-linked glycosylation of proteins.
CATALYTIC ACTIVITY: L-glutamine + D-fructose 6-phosphate = L- glutamate + D-glucosamine 6-phosphate.
PATHWAY: Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D- glucosamine biosynthesis; alpha-D-glucosamine 6-phosphate from D- fructose 6-phosphate: step 1/1.
SUBUNIT: Homotetramer (Potential).
TISSUE SPECIFICITY: Isoform 1 is predominantly expressed in skeletal muscle. Not expressed in brain. Seems to be selectively expressed in striated muscle.
DISEASE: Defects in GFPT1 are the cause of myasthenia, congenital, with tubular aggregates, type 1 (CMSTA1) [MIM:610542]. A congenital myasthenic syndrome characterized by onset of proximal muscle weakness in the first decade. Individuals with this condition have a recognizable pattern of weakness of shoulder and pelvic girdle muscles, and sparing of ocular or facial muscles. EMG classically shows a decremental response to repeated nerve stimulation, a sign of neuromuscular junction dysfunction. Affected individuals show a favorable response to acetylcholinesterase (AChE) inhibitors.
SIMILARITY: Contains 1 glutamine amidotransferase type-2 domain.
SIMILARITY: Contains 2 SIS domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GFPT1
Diseases sorted by gene-association score: myasthenia, congenital, 12, with tubular aggregates* (1200), congenital myasthenic syndromes with glycosylation defect* (247), myasthenia, limb-girdle, with tubular aggregates* (100), gfpt1-related congenital myasthenic syndrome* (100), pancreatic steatorrhea (11), breast giant fibroadenoma (11), congenital myasthenic syndrome (9), heart sarcoma (9), pericardium cancer (7), angular cheilitis (6), pericardial mesothelioma (6), myopathy, tubular aggregate, 1 (5), diabetes mellitus, noninsulin-dependent (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.00 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 406.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -56.70156-0.363 Picture PostScript Text
3' UTR -1812.306409-0.283 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017932 - GATase_2_dom
IPR000583 - GATase_dom
IPR005855 - GlmS_trans
IPR001347 - SIS

Pfam Domains:
PF01380 - SIS domain
PF13230 - Glutamine amidotransferases class-II
PF13522 - Glutamine amidotransferase domain
PF13537 - Glutamine amidotransferase domain

SCOP Domains:
53697 - SIS domain
56235 - N-terminal nucleophile aminohydrolases (Ntn hydrolases)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2V4M - X-ray MuPIT 2ZJ3 - X-ray MuPIT 2ZJ4 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q06210
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGD  WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GO:0008483 transaminase activity
GO:0016740 transferase activity
GO:0097367 carbohydrate derivative binding

Biological Process:
GO:0006002 fructose 6-phosphate metabolic process
GO:0006047 UDP-N-acetylglucosamine metabolic process
GO:0006048 UDP-N-acetylglucosamine biosynthetic process
GO:0006112 energy reserve metabolic process
GO:0006487 protein N-linked glycosylation
GO:0006541 glutamine metabolic process
GO:0032922 circadian regulation of gene expression
GO:0036498 IRE1-mediated unfolded protein response
GO:0048511 rhythmic process
GO:1901135 carbohydrate derivative metabolic process
GO:1901137 carbohydrate derivative biosynthetic process

Cellular Component:
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF384146 - JP 2014500723-A/191649: Polycomb-Associated Non-Coding RNAs.
BC045641 - Homo sapiens glutamine-fructose-6-phosphate transaminase 1, mRNA (cDNA clone MGC:41887 IMAGE:5298728), complete cds.
M90516 - Human glutamine:fructose-6-phosphate amidotransferase (GFAT) mRNA, complete cds.
MA619723 - JP 2018138019-A/191649: Polycomb-Associated Non-Coding RNAs.
AF131846 - Homo sapiens clone 25028 mRNA sequence.
AF445027 - Homo sapiens clone 114 tumor rejection antigen mRNA, complete cds.
DQ579229 - Homo sapiens piRNA piR-47341, complete sequence.
LF363777 - JP 2014500723-A/171280: Polycomb-Associated Non-Coding RNAs.
LF363776 - JP 2014500723-A/171279: Polycomb-Associated Non-Coding RNAs.
LF363775 - JP 2014500723-A/171278: Polycomb-Associated Non-Coding RNAs.
LF363773 - JP 2014500723-A/171276: Polycomb-Associated Non-Coding RNAs.
LF363772 - JP 2014500723-A/171275: Polycomb-Associated Non-Coding RNAs.
LF363769 - JP 2014500723-A/171272: Polycomb-Associated Non-Coding RNAs.
LF363768 - JP 2014500723-A/171271: Polycomb-Associated Non-Coding RNAs.
LF363767 - JP 2014500723-A/171270: Polycomb-Associated Non-Coding RNAs.
LF363766 - JP 2014500723-A/171269: Polycomb-Associated Non-Coding RNAs.
JD149292 - Sequence 130316 from Patent EP1572962.
JD185294 - Sequence 166318 from Patent EP1572962.
JD366275 - Sequence 347299 from Patent EP1572962.
JD185293 - Sequence 166317 from Patent EP1572962.
JD366274 - Sequence 347298 from Patent EP1572962.
JD185295 - Sequence 166319 from Patent EP1572962.
JD366276 - Sequence 347300 from Patent EP1572962.
JD105768 - Sequence 86792 from Patent EP1572962.
JD517381 - Sequence 498405 from Patent EP1572962.
JD105767 - Sequence 86791 from Patent EP1572962.
JD517380 - Sequence 498404 from Patent EP1572962.
JD149289 - Sequence 130313 from Patent EP1572962.
JD149295 - Sequence 130319 from Patent EP1572962.
JD353991 - Sequence 335015 from Patent EP1572962.
JD377956 - Sequence 358980 from Patent EP1572962.
JD243119 - Sequence 224143 from Patent EP1572962.
JD431721 - Sequence 412745 from Patent EP1572962.
JD478257 - Sequence 459281 from Patent EP1572962.
JD165861 - Sequence 146885 from Patent EP1572962.
JD375975 - Sequence 356999 from Patent EP1572962.
JD497597 - Sequence 478621 from Patent EP1572962.
JD182415 - Sequence 163439 from Patent EP1572962.
JD267299 - Sequence 248323 from Patent EP1572962.
LF363765 - JP 2014500723-A/171268: Polycomb-Associated Non-Coding RNAs.
LF363763 - JP 2014500723-A/171266: Polycomb-Associated Non-Coding RNAs.
JD256292 - Sequence 237316 from Patent EP1572962.
JD429625 - Sequence 410649 from Patent EP1572962.
JD385140 - Sequence 366164 from Patent EP1572962.
JD248107 - Sequence 229131 from Patent EP1572962.
LF363762 - JP 2014500723-A/171265: Polycomb-Associated Non-Coding RNAs.
JD292901 - Sequence 273925 from Patent EP1572962.
LF363761 - JP 2014500723-A/171264: Polycomb-Associated Non-Coding RNAs.
JD556865 - Sequence 537889 from Patent EP1572962.
LF363760 - JP 2014500723-A/171263: Polycomb-Associated Non-Coding RNAs.
LF363757 - JP 2014500723-A/171260: Polycomb-Associated Non-Coding RNAs.
LF213546 - JP 2014500723-A/21049: Polycomb-Associated Non-Coding RNAs.
LF363756 - JP 2014500723-A/171259: Polycomb-Associated Non-Coding RNAs.
LF363753 - JP 2014500723-A/171256: Polycomb-Associated Non-Coding RNAs.
LF363752 - JP 2014500723-A/171255: Polycomb-Associated Non-Coding RNAs.
AF334737 - Homo sapiens glutamine: fructose-6-phosphate amidotransferase 1 muscle isoform GFAT1M mRNA, partial cds.
LF363746 - JP 2014500723-A/171249: Polycomb-Associated Non-Coding RNAs.
MA599354 - JP 2018138019-A/171280: Polycomb-Associated Non-Coding RNAs.
MA599353 - JP 2018138019-A/171279: Polycomb-Associated Non-Coding RNAs.
MA599352 - JP 2018138019-A/171278: Polycomb-Associated Non-Coding RNAs.
MA599350 - JP 2018138019-A/171276: Polycomb-Associated Non-Coding RNAs.
MA599349 - JP 2018138019-A/171275: Polycomb-Associated Non-Coding RNAs.
MA599346 - JP 2018138019-A/171272: Polycomb-Associated Non-Coding RNAs.
MA599345 - JP 2018138019-A/171271: Polycomb-Associated Non-Coding RNAs.
MA599344 - JP 2018138019-A/171270: Polycomb-Associated Non-Coding RNAs.
MA599343 - JP 2018138019-A/171269: Polycomb-Associated Non-Coding RNAs.
MA599342 - JP 2018138019-A/171268: Polycomb-Associated Non-Coding RNAs.
MA599340 - JP 2018138019-A/171266: Polycomb-Associated Non-Coding RNAs.
MA599339 - JP 2018138019-A/171265: Polycomb-Associated Non-Coding RNAs.
MA599338 - JP 2018138019-A/171264: Polycomb-Associated Non-Coding RNAs.
MA599337 - JP 2018138019-A/171263: Polycomb-Associated Non-Coding RNAs.
MA599334 - JP 2018138019-A/171260: Polycomb-Associated Non-Coding RNAs.
MA599333 - JP 2018138019-A/171259: Polycomb-Associated Non-Coding RNAs.
MA599330 - JP 2018138019-A/171256: Polycomb-Associated Non-Coding RNAs.
MA599329 - JP 2018138019-A/171255: Polycomb-Associated Non-Coding RNAs.
MA599323 - JP 2018138019-A/171249: Polycomb-Associated Non-Coding RNAs.
MA449123 - JP 2018138019-A/21049: Polycomb-Associated Non-Coding RNAs.
JD190256 - Sequence 171280 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
UDPNACETYLGALSYN-PWY - UDP-N-acetyl-D-glucosamine biosynthesis II

Reactome (by CSHL, EBI, and GO)

Protein Q06210 (Reactome details) participates in the following event(s):

R-HSA-449715 GFPT1,2 transfer an amino group from L-Gln to F6P to form GlcN6P
R-HSA-381038 XBP1(S) activates chaperone genes
R-HSA-381070 IRE1alpha activates chaperones
R-HSA-446210 Synthesis of UDP-N-acetyl-glucosamine
R-HSA-381119 Unfolded Protein Response (UPR)
R-HSA-446219 Synthesis of substrates in N-glycan biosythesis
R-HSA-392499 Metabolism of proteins
R-HSA-446193 Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
R-HSA-446203 Asparagine N-linked glycosylation
R-HSA-597592 Post-translational protein modification

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000357308.1, ENST00000357308.2, ENST00000357308.3, ENST00000357308.4, ENST00000357308.5, ENST00000357308.6, ENST00000357308.7, ENST00000357308.8, GFAT, GFPT, GFPT1_HUMAN, NM_001244710, Q06210, Q53QE6, Q9BXF8, uc317zzb.1, uc317zzb.2
UCSC ID: ENST00000357308.9_8
RefSeq Accession: NM_001244710.2
Protein: Q06210 (aka GFPT1_HUMAN or GFA1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene GFPT1:
cms (Congenital Myasthenic Syndromes Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.