Human Gene GCSAM (ENST00000308910.9_11) from GENCODE V47lift37
  Description: germinal center associated signaling and motility, transcript variant 1 (from RefSeq NM_152785.5)
Gencode Transcript: ENST00000308910.9_11
Gencode Gene: ENSG00000174500.13_16
Transcript (Including UTRs)
   Position: hg19 chr3:111,839,686-111,852,095 Size: 12,410 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr3:111,842,302-111,851,967 Size: 9,666 Coding Exon Count: 6 

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Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:111,839,686-111,852,095)mRNA (may differ from genome)Protein (178 aa)
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GCSAM_HUMAN
DESCRIPTION: RecName: Full=Germinal center-associated signaling and motility protein; AltName: Full=Germinal center B-cell-expressed transcript 2 protein; AltName: Full=Germinal center-associated lymphoma protein; Short=hGAL;
FUNCTION: Involved in the negative regulation of lymphocyte motility. It mediates the migration-inhibitory effects of IL6. Serves as a positive regulator of the RhoA signaling pathway. Enhancement of RhoA activation results in inhibition of lymphocyte and lymphoma cell motility by activation of its downstream effector ROCK.
SUBUNIT: Interacts with ACTB and MYH2; the interaction with MYH2 is increased by IL6-induced phosphorylation. Interacts (via C- terminus) with ARHGEF11 (via DH domain). Interacts with ARHGEF12.
SUBCELLULAR LOCATION: Cytoplasm. Cell membrane. Note=It relocalizes from the cytoplasm to podosome-like structures upon cell treatment with IL6.
TISSUE SPECIFICITY: Expressed in diffuse large B-cell lymphoma (DLBCL) and several germinal center (GC)-like lymphoma cell lines (at protein level). Highly expressed in normal GC lymphocytes and GC-derived malignancies. Expressed in thymus and spleen.
INDUCTION: Up-regulated by IL4/interleukin-4.
PTM: Phosphorylation on tyrosine residues can be induced by IL6. Phosphorylation is mediated by LYN.

-  Primer design for this transcript
 

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Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GCSAM
Diseases sorted by gene-association score: lymphoma (9), diffuse large b-cell lymphoma (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 53.15 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 89.58 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -40.40128-0.316 Picture PostScript Text
3' UTR -665.802616-0.255 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF15666 - Germinal center-associated lymphoma

ModBase Predicted Comparative 3D Structure on Q8N6F7
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0005515 protein binding
GO:0019901 protein kinase binding
GO:0045159 myosin II binding

Biological Process:
GO:0050855 regulation of B cell receptor signaling pathway
GO:2000401 regulation of lymphocyte migration
GO:2000402 negative regulation of lymphocyte migration

Cellular Component:
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  AY212246 - Homo sapiens germinal center B-cell expressed transcript 2 (GCET2) mRNA, complete cds.
AF521911 - Homo sapiens HGAL mRNA, complete cds.
BC030506 - Homo sapiens germinal center expressed transcript 2, mRNA (cDNA clone MGC:40441 IMAGE:4385178), complete cds.
JD042972 - Sequence 23996 from Patent EP1572962.
JD180161 - Sequence 161185 from Patent EP1572962.
JD077396 - Sequence 58420 from Patent EP1572962.
JD049279 - Sequence 30303 from Patent EP1572962.
JD403771 - Sequence 384795 from Patent EP1572962.
JD049130 - Sequence 30154 from Patent EP1572962.
AK313368 - Homo sapiens cDNA, FLJ93897, highly similar to Homo sapiens germinal center expressed transcript 2 (GCET2), mRNA.
KJ900526 - Synthetic construct Homo sapiens clone ccsbBroadEn_09920 GCET2 gene, encodes complete protein.
HQ447219 - Synthetic construct Homo sapiens clone IMAGE:100070520; CCSB009605_01 germinal center expressed transcript 2 (GCET2) gene, encodes complete protein.
CU688884 - Synthetic construct Homo sapiens gateway clone IMAGE:100018155 5' read GCET2 mRNA.
AK128276 - Homo sapiens cDNA FLJ46413 fis, clone THYMU3011543.

-  Other Names for This Gene
  Alternate Gene Symbols: C9JD17, C9JUG6, ENST00000308910.1, ENST00000308910.2, ENST00000308910.3, ENST00000308910.4, ENST00000308910.5, ENST00000308910.6, ENST00000308910.7, ENST00000308910.8, GAL, GCET2, GCSAM_HUMAN, NM_152785, Q8N6F7, uc317okf.1, uc317okf.2
UCSC ID: ENST00000308910.9_11
RefSeq Accession: NM_152785.5
Protein: Q8N6F7 (aka GCSAM_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.