Human Gene GADD45GIP1 (ENST00000316939.3_7) from GENCODE V47lift37
  Description: GADD45G interacting protein 1 (from RefSeq NM_052850.4)
Gencode Transcript: ENST00000316939.3_7
Gencode Gene: ENSG00000179271.3_9
Transcript (Including UTRs)
   Position: hg19 chr19:13,063,933-13,068,037 Size: 4,105 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr19:13,065,022-13,068,026 Size: 3,005 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:13,063,933-13,068,037)mRNA (may differ from genome)Protein (222 aa)
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: G45IP_HUMAN
DESCRIPTION: RecName: Full=Growth arrest and DNA damage-inducible proteins-interacting protein 1; AltName: Full=CKII beta-associating protein; AltName: Full=CR6-interacting factor 1; Short=CRIF1; AltName: Full=Papillomavirus L2-interacting nuclear protein 1; Short=PLINP; Short=PLINP-1; AltName: Full=p53-responsive gene 6 protein;
FUNCTION: Acts as a negative regulator of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occurs also in the absence of GADD45 proteins. Acts as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity. May be involved in the hormone-mediated regulation of NR4A1 transcriptional activity. May play a role in mitochondrial protein synthesis.
SUBUNIT: Interacts with GADD45A, GADD45B and GADD45G. Interacts with NR4A1 via the NR4A1 AB domain. Interacts with the human papilloma virus type 16 (HPV 16) minor capsid protein L2. Interacts with ATAD3A and ATAD3B.
INTERACTION: P24522:GADD45A; NbExp=3; IntAct=EBI-372506, EBI-448167; P22339:Gadd45b (xeno); NbExp=3; IntAct=EBI-372506, EBI-2266938; O95257:GADD45G; NbExp=4; IntAct=EBI-372506, EBI-448202;
SUBCELLULAR LOCATION: Mitochondrion. Nucleus. Note=Using N- terminally tagged constructs, has been found in the nucleus (PubMed:12482659). C-terminally tagged constructs are targeted exclusively to mitochondria (PubMed:22453275). This discrepancy may be explained by masking of a potential N-terminal mitochondrial targeting signal by the tag (PubMed:22453275).
TISSUE SPECIFICITY: Widely expressed. Highly expressed in the thyroid gland, heart, lymph nodes, trachea and adrenal tissues. Expressed at lower level in liver skeletal muscle, kidney, pancreas, testis, ovary and stomach. Barely detectable in adrenal adenoma and papillary thyroid cancer.
INDUCTION: Down-regulated by p53/TP53 in apoptotic cells.
MISCELLANEOUS: Cells overexpressing GADD45GIP1 were more likely to be in G1 and less likely to be in S phase and grow more slowly than control cells. Inhibiting the expression of GADD45GIP1 promotes cell cycle progression.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C023514 2,6-dinitrotoluene
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D019327 Copper Sulfate
  • D003375 Coumestrol
  • D003993 Dibutyl Phthalate
  • C513635 S-2-pentyl-4-pentynoic hydroxamic acid
  • D013749 Tetrachlorodibenzodioxin
  • D014415 Tunicamycin
  • D014635 Valproic Acid
  • C015559 trimellitic anhydride

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 60.00 RPKM in Brain - Hypothalamus
Total median expression: 2332.58 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -459.301089-0.422 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018472 - Damage-induce-interacting_prot

Pfam Domains:
PF10147 - Growth arrest and DNA-damage-inducible proteins-interacting protein 1

ModBase Predicted Comparative 3D Structure on Q8TAE8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0007049 cell cycle
GO:0016032 viral process
GO:0070125 mitochondrial translational elongation
GO:0070126 mitochondrial translational termination
GO:0071850 mitotic cell cycle arrest

Cellular Component:
GO:0005634 nucleus
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
GO:0005761 mitochondrial ribosome
GO:0005840 ribosome


-  Descriptions from all associated GenBank mRNAs
  AJ295986 - Homo sapiens mRNA for hypothetical protein (ORF1), clone Telethon(Italy_B41)_Strait01240_FL405.
BC069200 - Homo sapiens growth arrest and DNA-damage-inducible, gamma interacting protein 1, mRNA (cDNA clone MGC:78462 IMAGE:5467620), complete cds.
AF479749 - Homo sapiens CR6 interacting factor 1 mRNA, complete cds.
BC004944 - Homo sapiens growth arrest and DNA-damage-inducible, gamma interacting protein 1, mRNA (cDNA clone IMAGE:3615328), partial cds.
BC013027 - Homo sapiens growth arrest and DNA-damage-inducible, gamma interacting protein 1, mRNA (cDNA clone IMAGE:3531729), partial cds.
BC013039 - Homo sapiens growth arrest and DNA-damage-inducible, gamma interacting protein 1, mRNA (cDNA clone IMAGE:3537574), partial cds.
AF412816 - Homo sapiens CKII beta binding protein 2 mRNA, complete cds.
AF475095 - Homo sapiens CKII beta associating protein mRNA, complete cds.
JD387795 - Sequence 368819 from Patent EP1572962.
JD105232 - Sequence 86256 from Patent EP1572962.
AJ429498 - Homo sapiens mRNA for Papillomavirus L2 interacting nuclear protein 1 (PLINP-1 gene).
HQ447517 - Synthetic construct Homo sapiens clone IMAGE:100070856; CCSB014860_01 growth arrest and DNA-damage-inducible, gamma interacting protein 1 (GADD45GIP1) gene, encodes complete protein.
KJ904939 - Synthetic construct Homo sapiens clone ccsbBroadEn_14333 GADD45GIP1 gene, encodes complete protein.
CU686712 - Synthetic construct Homo sapiens gateway clone IMAGE:100023104 5' read GADD45GIP1 mRNA.
JD020615 - Sequence 1639 from Patent EP1572962.
JD028456 - Sequence 9480 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8TAE8 (Reactome details) participates in the following event(s):

R-HSA-5389839 39S subunit binds 28S subunit:mRNA:fMet-tRNA
R-HSA-5419273 Hydrolysis of GTP and dissociation of 28S and 39S subunits
R-HSA-5389848 TUFM:GTP:aminoacyl-tRNA binds 55S ribosome:mRNA:fMet-tRNA
R-HSA-5389857 Peptide transfer from P-site to A-site (peptide bond formation)
R-HSA-5389842 TUFM hydrolyzes GTP and TUFM:GDP dissociates from 55S ribosome
R-HSA-5419261 55S ribosome with peptidyl-tRNA in A site binds GFM1:GTP
R-HSA-5419281 MRRF binds 55S ribosome:mRNA:tRNA
R-HSA-5419279 Translocation of peptidyl-tRNA from A-site to P-site (and translocation of 55S ribosome by 3 bases along mRNA)
R-HSA-5419264 MTRF1L (MTRF1a) or ICT1 binds stop codon in 55S ribosome:mRNA:peptidyl-tRNA
R-HSA-5419277 GFM2:GTP binds 55S ribosome:mRNA:tRNA:MRRF releasing mRNA and tRNA
R-HSA-5368286 Mitochondrial translation initiation
R-HSA-5419276 Mitochondrial translation termination
R-HSA-5368287 Mitochondrial translation
R-HSA-5389840 Mitochondrial translation elongation
R-HSA-72766 Translation
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000316939.1, ENST00000316939.2, G45IP_HUMAN, MRPL59, NM_052850, PLINP1, PRG6, Q8IVM3, Q8TAE8, Q8TE51, Q969P9, Q9BSM6, uc317qcz.1, uc317qcz.2
UCSC ID: ENST00000316939.3_7
RefSeq Accession: NM_052850.4
Protein: Q8TAE8 (aka G45IP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.