Human Gene G6PD (ENST00000393562.10_14) from GENCODE V47lift37
  Description: glucose-6-phosphate dehydrogenase, transcript variant 3 (from RefSeq NM_001360016.2)
Gencode Transcript: ENST00000393562.10_14
Gencode Gene: ENSG00000160211.20_18
Transcript (Including UTRs)
   Position: hg19 chrX:153,759,606-153,775,061 Size: 15,456 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg19 chrX:153,760,215-153,774,370 Size: 14,156 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:153,759,606-153,775,061)mRNA (may differ from genome)Protein (515 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: G6PD_HUMAN
DESCRIPTION: RecName: Full=Glucose-6-phosphate 1-dehydrogenase; Short=G6PD; EC=1.1.1.49;
FUNCTION: Produces pentose sugars for nucleic acid synthesis and main producer of NADPH reducing power.
CATALYTIC ACTIVITY: D-glucose 6-phosphate + NADP(+) = 6-phospho-D- glucono-1,5-lactone + NADPH.
PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D- ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.
SUBUNIT: Homodimer or homotetramer.
TISSUE SPECIFICITY: Isoform Long is found in lymphoblasts, granulocytes and sperm.
POLYMORPHISM: The sequence shown is that of variant B, the most common variant.
DISEASE: Defects in G6PD are the cause of chronic non-spherocytic hemolytic anemia (CNSHA) [MIM:305900]. Deficiency of G6PD is associated with hemolytic anemia in two different situations. First, in areas in which malaria has been endemic, G6PD-deficiency alleles have reached high frequencies (1% to 50%) and deficient individuals, though essentially asymptomatic in the steady state, have a high risk of acute hemolytic attacks. Secondly, sporadic cases of G6PD deficiency occur at a very low frequencies, and they usually present a more severe phenotype. Several types of CNSHA are recognized. Class-I variants are associated with severe NSHA; class-II have an activity <10% of normal; class-III have an activity of 10% to 60% of normal; class-IV have near normal activity.
MISCELLANEOUS: Has NADP both as cofactor (bound to the N-terminal domain) and as structural element bound to the C-terminal domain.
SIMILARITY: Belongs to the glucose-6-phosphate dehydrogenase family.
SEQUENCE CAUTION: Sequence=AAA63175.1; Type=Erroneous initiation;
WEB RESOURCE: Name=G6PD; Note=G6PD deficiency resource; URL="http://rialto.com/g6pd/";
WEB RESOURCE: Name=G6PDdb; Note=G6PD mutation database; URL="http://www.bioinf.org.uk/g6pd/";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/G6PD";
WEB RESOURCE: Name=SHMPD; Note=The Singapore human mutation and polymorphism database; URL="http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=G6PD";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: G6PD
Diseases sorted by gene-association score: hemolytic anemia due to g6pd deficiency* (1593), favism* (971), glucosephosphate dehydrogenase deficiency* (553), g6pd-related altered drug metabolism* (525), malaria* (199), neonatal jaundice (40), congenital hemolytic anemia (36), blackwater fever (28), plasmodium vivax malaria (22), hemolytic anemia (21), kernicterus (21), pyruvate kinase deficiency (19), 6-phosphogluconate dehydrogenase deficiency (18), acquired methemoglobinemia (17), methemoglobinemia (14), blood group incompatibility (13), glucosephosphate isomerase deficiency (13), meningococcal infection (13), senile cataract (12), gilbert syndrome (12), color blindness (12), back pain (11), congenital nonspherocytic hemolytic anemia (10), sickle cell disease (10), congenital methemoglobinemia (9), glutathione synthetase deficiency (9), deficiency anemia (8), koro (8), plasmodium falciparum malaria (7), histiocytosis-lymphadenopathy plus syndrome (7), phenylketonuria (7), acne (7), parotitis (7), bilirubin metabolic disorder (6), lymphosarcoma (6), galactosemia (6), microcytic anemia (6), thalassemias, alpha- (6), hyperphenylalaninemia (5), ischemic optic neuropathy (5), thalassemia, hispanic gamma-delta-beta (4), chronic granulomatous disease (2), hereditary spherocytosis (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 64.48 RPKM in Testis
Total median expression: 948.28 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -22.5066-0.341 Picture PostScript Text
3' UTR -226.90609-0.373 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001282 - G6P_DH
IPR019796 - G6P_DH_AS
IPR022675 - G6P_DH_C
IPR022674 - G6P_DH_NAD-bd
IPR016040 - NAD(P)-bd_dom

Pfam Domains:
PF00479 - Glucose-6-phosphate dehydrogenase, NAD binding domain
PF02781 - Glucose-6-phosphate dehydrogenase, C-terminal domain

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains
55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1QKI - X-ray MuPIT 2BH9 - X-ray MuPIT 2BHL - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P11413
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004345 glucose-6-phosphate dehydrogenase activity
GO:0005515 protein binding
GO:0005536 glucose binding
GO:0016491 oxidoreductase activity
GO:0030246 carbohydrate binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0050661 NADP binding

Biological Process:
GO:0005975 carbohydrate metabolic process
GO:0006006 glucose metabolic process
GO:0006098 pentose-phosphate shunt
GO:0006629 lipid metabolic process
GO:0006695 cholesterol biosynthetic process
GO:0006739 NADP metabolic process
GO:0006740 NADPH regeneration
GO:0006749 glutathione metabolic process
GO:0009051 pentose-phosphate shunt, oxidative branch
GO:0010041 response to iron(III) ion
GO:0010734 negative regulation of protein glutathionylation
GO:0014070 response to organic cyclic compound
GO:0019322 pentose biosynthetic process
GO:0021762 substantia nigra development
GO:0032094 response to food
GO:0034599 cellular response to oxidative stress
GO:0043249 erythrocyte maturation
GO:0043523 regulation of neuron apoptotic process
GO:0045471 response to ethanol
GO:0046390 ribose phosphate biosynthetic process
GO:0051156 glucose 6-phosphate metabolic process
GO:0055114 oxidation-reduction process
GO:0061052 negative regulation of cell growth involved in cardiac muscle cell development
GO:1904879 positive regulation of calcium ion transmembrane transport via high voltage-gated calcium channel
GO:2000378 negative regulation of reactive oxygen species metabolic process

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0009898 cytoplasmic side of plasma membrane
GO:0016020 membrane
GO:0043231 intracellular membrane-bounded organelle
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC000337 - Homo sapiens glucose-6-phosphate dehydrogenase, mRNA (cDNA clone MGC:8534 IMAGE:2822640), complete cds.
GQ891491 - Homo sapiens clone HEL-S-212 epididymis secretory sperm binding protein mRNA, complete cds.
X03674 - Human mRNA for glucose-6-phosphate dehydrogenase (G6PD).
M21248 - Human glucose-6-phosphate dehydrogenase variant A-, complete cds.
JD054847 - Sequence 35871 from Patent EP1572962.
M12996 - Human glucose-6-phosphate dehydrogenase (G6PD) mRNA, 3' end.
JD370576 - Sequence 351600 from Patent EP1572962.
LF380913 - JP 2014500723-A/188416: Polycomb-Associated Non-Coding RNAs.
JD189423 - Sequence 170447 from Patent EP1572962.
AK302341 - Homo sapiens cDNA FLJ56794 complete cds, highly similar to Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49).
LF380914 - JP 2014500723-A/188417: Polycomb-Associated Non-Coding RNAs.
JD541782 - Sequence 522806 from Patent EP1572962.
AK292304 - Homo sapiens cDNA FLJ75439 complete cds, highly similar to Homo sapiens glucose-6-phosphate dehydrogenase, mRNA.
JD481663 - Sequence 462687 from Patent EP1572962.
JD544049 - Sequence 525073 from Patent EP1572962.
LF380915 - JP 2014500723-A/188418: Polycomb-Associated Non-Coding RNAs.
JD461481 - Sequence 442505 from Patent EP1572962.
JD517093 - Sequence 498117 from Patent EP1572962.
JD247336 - Sequence 228360 from Patent EP1572962.
JD398412 - Sequence 379436 from Patent EP1572962.
JD246463 - Sequence 227487 from Patent EP1572962.
JD116781 - Sequence 97805 from Patent EP1572962.
JD134118 - Sequence 115142 from Patent EP1572962.
JD442917 - Sequence 423941 from Patent EP1572962.
JD457005 - Sequence 438029 from Patent EP1572962.
JD424034 - Sequence 405058 from Patent EP1572962.
JD526756 - Sequence 507780 from Patent EP1572962.
JD091765 - Sequence 72789 from Patent EP1572962.
JD128961 - Sequence 109985 from Patent EP1572962.
LF380917 - JP 2014500723-A/188420: Polycomb-Associated Non-Coding RNAs.
JD320714 - Sequence 301738 from Patent EP1572962.
JD123146 - Sequence 104170 from Patent EP1572962.
KJ896841 - Synthetic construct Homo sapiens clone ccsbBroadEn_06235 G6PD gene, encodes complete protein.
DQ892219 - Synthetic construct clone IMAGE:100004849; FLH184182.01X; RZPDo839D01144D glucose-6-phosphate dehydrogenase (G6PD) gene, encodes complete protein.
DQ895415 - Synthetic construct Homo sapiens clone IMAGE:100009875; FLH184178.01L; RZPDo839D01143D glucose-6-phosphate dehydrogenase (G6PD) gene, encodes complete protein.
LF380919 - JP 2014500723-A/188422: Polycomb-Associated Non-Coding RNAs.
LF380921 - JP 2014500723-A/188424: Polycomb-Associated Non-Coding RNAs.
LF380922 - JP 2014500723-A/188425: Polycomb-Associated Non-Coding RNAs.
CU674164 - Synthetic construct Homo sapiens gateway clone IMAGE:100017683 5' read G6PD mRNA.
LF380923 - JP 2014500723-A/188426: Polycomb-Associated Non-Coding RNAs.
LF380924 - JP 2014500723-A/188427: Polycomb-Associated Non-Coding RNAs.
S58359 - glucose-6-phosphate dehydrogenase {5' region, clone pG6PD545} [human, reticulocytes, mRNA Partial, 366 nt].
M27940 - Human glucose-6-phosphate dehydrogenase (G6PD) mRNA, 5' end.
LF380930 - JP 2014500723-A/188433: Polycomb-Associated Non-Coding RNAs.
JD218277 - Sequence 199301 from Patent EP1572962.
MA616490 - JP 2018138019-A/188416: Polycomb-Associated Non-Coding RNAs.
MA616491 - JP 2018138019-A/188417: Polycomb-Associated Non-Coding RNAs.
MA616492 - JP 2018138019-A/188418: Polycomb-Associated Non-Coding RNAs.
MA616494 - JP 2018138019-A/188420: Polycomb-Associated Non-Coding RNAs.
MA616496 - JP 2018138019-A/188422: Polycomb-Associated Non-Coding RNAs.
MA616498 - JP 2018138019-A/188424: Polycomb-Associated Non-Coding RNAs.
MA616499 - JP 2018138019-A/188425: Polycomb-Associated Non-Coding RNAs.
MA616500 - JP 2018138019-A/188426: Polycomb-Associated Non-Coding RNAs.
MA616501 - JP 2018138019-A/188427: Polycomb-Associated Non-Coding RNAs.
MA616507 - JP 2018138019-A/188433: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
OXIDATIVEPENT-PWY - pentose phosphate pathway (oxidative branch)

Reactome (by CSHL, EBI, and GO)

Protein P11413 (Reactome details) participates in the following event(s):

R-HSA-70377 alpha-D-glucose 6-phosphate + NADP+ => D-glucono-1,5-lactone 6-phosphate + NADPH + H+
R-HSA-71336 Pentose phosphate pathway (hexose monophosphate shunt)
R-HSA-5628897 TP53 Regulates Metabolic Genes
R-HSA-71387 Metabolism of carbohydrates
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-1430728 Metabolism
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: D3DWX9, ENST00000393562.1, ENST00000393562.2, ENST00000393562.3, ENST00000393562.4, ENST00000393562.5, ENST00000393562.6, ENST00000393562.7, ENST00000393562.8, ENST00000393562.9, G6PD_HUMAN, NM_001360016, P11413, Q16000, Q16765, Q8IU70, Q8IU88, Q8IUA6, Q96PQ2, uc318vyq.1, uc318vyq.2
UCSC ID: ENST00000393562.10_14
RefSeq Accession: NM_001360016.2
Protein: P11413 (aka G6PD_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.