Human Gene G3BP2 (ENST00000359707.9_10) from GENCODE V47lift37
  Description: G3BP stress granule assembly factor 2, transcript variant 1 (from RefSeq NM_203505.3)
Gencode Transcript: ENST00000359707.9_10
Gencode Gene: ENSG00000138757.15_17
Transcript (Including UTRs)
   Position: hg19 chr4:76,567,970-76,598,595 Size: 30,626 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr4:76,570,614-76,587,209 Size: 16,596 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:76,567,970-76,598,595)mRNA (may differ from genome)Protein (482 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: G3BP2_HUMAN
DESCRIPTION: RecName: Full=Ras GTPase-activating protein-binding protein 2; Short=G3BP-2; AltName: Full=GAP SH3 domain-binding protein 2;
FUNCTION: Probable scaffold protein that may be involved in mRNA transport (Potential).
SUBUNIT: Binds to the N-terminal domain of I-kappa-B-alpha.
SUBCELLULAR LOCATION: Cytoplasm.
PTM: Arg-457 and Arg-468 are dimethylated, probably to asymmetric dimethylarginine.
SIMILARITY: Contains 1 NTF2 domain.
SIMILARITY: Contains 1 RRM (RNA recognition motif) domain.
SEQUENCE CAUTION: Sequence=BAA31635.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 36.96 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 866.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -93.00228-0.408 Picture PostScript Text
3' UTR -655.302644-0.248 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002075 - NTF2
IPR018222 - Nuclear_transport_factor_2_euk
IPR012677 - Nucleotide-bd_a/b_plait
IPR000504 - RRM_dom

Pfam Domains:
PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF02136 - Nuclear transport factor 2 (NTF2) domain

SCOP Domains:
54427 - NTF2-like
54060 - His-Me finger endonucleases
54928 - RNA-binding domain, RBD

ModBase Predicted Comparative 3D Structure on Q9UN86
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0030159 receptor signaling complex scaffold activity

Biological Process:
GO:0007253 cytoplasmic sequestering of NF-kappaB
GO:0007265 Ras protein signal transduction
GO:0034063 stress granule assembly
GO:0051028 mRNA transport

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AB014560 - Homo sapiens KIAA0660 mRNA for KIAA0660 protein.
JD355359 - Sequence 336383 from Patent EP1572962.
JD530689 - Sequence 511713 from Patent EP1572962.
JD345450 - Sequence 326474 from Patent EP1572962.
JD273940 - Sequence 254964 from Patent EP1572962.
JD297529 - Sequence 278553 from Patent EP1572962.
JD299998 - Sequence 281022 from Patent EP1572962.
JD091019 - Sequence 72043 from Patent EP1572962.
JD362824 - Sequence 343848 from Patent EP1572962.
JD040006 - Sequence 21030 from Patent EP1572962.
JD061687 - Sequence 42711 from Patent EP1572962.
JD299559 - Sequence 280583 from Patent EP1572962.
JD132484 - Sequence 113508 from Patent EP1572962.
JD283068 - Sequence 264092 from Patent EP1572962.
JD549161 - Sequence 530185 from Patent EP1572962.
BC011731 - Homo sapiens GTPase activating protein (SH3 domain) binding protein 2, mRNA (cDNA clone MGC:19504 IMAGE:4337457), complete cds.
JD374967 - Sequence 355991 from Patent EP1572962.
JD412242 - Sequence 393266 from Patent EP1572962.
JD081988 - Sequence 63012 from Patent EP1572962.
JD548716 - Sequence 529740 from Patent EP1572962.
JD377152 - Sequence 358176 from Patent EP1572962.
JD301392 - Sequence 282416 from Patent EP1572962.
AK291786 - Homo sapiens cDNA FLJ75732 complete cds, highly similar to Homo sapiens Ras-GTPase activating protein SH3 domain-binding protein 2 (G3BP2), transcript variant 2, mRNA.
AK291772 - Homo sapiens cDNA FLJ76053 complete cds, highly similar to Homo sapiens Ras-GTPase activating protein SH3 domain-binding protein 2 (G3BP2), transcript variant 3, mRNA.
JD452540 - Sequence 433564 from Patent EP1572962.
AF070615 - Homo sapiens clone 24745 mRNA sequence.
JD502110 - Sequence 483134 from Patent EP1572962.
AF053535 - Homo sapiens ras-GAP/RNA binding protein G3BP2 (G3BP2) mRNA, complete cds.
AF145284 - Homo sapiens RNA-binding protein isoform G3BP-2a (G3BP2) mRNA, complete cds.
JD199342 - Sequence 180366 from Patent EP1572962.
AF051311 - Homo sapiens Ras-GAP SH3 binding protein (G3BP2) mRNA, complete cds.
KJ892874 - Synthetic construct Homo sapiens clone ccsbBroadEn_02268 G3BP2 gene, encodes complete protein.
AB385368 - Synthetic construct DNA, clone: pF1KA0660, Homo sapiens G3BP2 gene for Ras GTPase-activating protein-binding protein 2, complete cds, without stop codon, in Flexi system.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K6X1, ENST00000359707.1, ENST00000359707.2, ENST00000359707.3, ENST00000359707.4, ENST00000359707.5, ENST00000359707.6, ENST00000359707.7, ENST00000359707.8, G3BP2 , G3BP2_HUMAN, KIAA0660, NM_203505, O60606, O75149, Q9UN86, Q9UPA1, uc318bem.1, uc318bem.2
UCSC ID: ENST00000359707.9_10
RefSeq Accession: NM_203505.3
Protein: Q9UN86 (aka G3BP2_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.