Human Gene EXOC4 (ENST00000253861.5_5) from GENCODE V47lift37
  Description: exocyst complex component 4, transcript variant 1 (from RefSeq NM_021807.4)
Gencode Transcript: ENST00000253861.5_5
Gencode Gene: ENSG00000131558.16_11
Transcript (Including UTRs)
   Position: hg19 chr7:132,937,834-133,750,514 Size: 812,681 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr7:132,937,858-133,749,281 Size: 811,424 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:132,937,834-133,750,514)mRNA (may differ from genome)Protein (974 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EXOC4_HUMAN
DESCRIPTION: RecName: Full=Exocyst complex component 4; AltName: Full=Exocyst complex component Sec8;
FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane (By similarity).
SUBUNIT: The exocyst complex is composed of EXOC1, EXOC2, EXOC3, EXOC4, EXOC5, EXOC6, EXOC7 and EXOC8 (By similarity). Interacts with BIRC6/bruce. Interacts with MYRIP (By similarity).
INTERACTION: Q9NR09:BIRC6; NbExp=3; IntAct=EBI-355383, EBI-1765160;
SIMILARITY: Belongs to the SEC8 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.76 RPKM in Cells - Cultured fibroblasts
Total median expression: 346.83 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -5.8024-0.242 Picture PostScript Text
3' UTR -342.001233-0.277 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007191 - Sec8_exocyst

Pfam Domains:
PF04048 - Sec8 exocyst complex component specific domain

SCOP Domains:
47831 - Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q96A65
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0017160 Ral GTPase binding
GO:0030165 PDZ domain binding
GO:0047485 protein N-terminus binding

Biological Process:
GO:0006612 protein targeting to membrane
GO:0006887 exocytosis
GO:0006893 Golgi to plasma membrane transport
GO:0006903 vesicle targeting
GO:0006904 vesicle docking involved in exocytosis
GO:0007268 chemical synaptic transmission
GO:0015031 protein transport
GO:0016241 regulation of macroautophagy
GO:0048341 paraxial mesoderm formation

Cellular Component:
GO:0000145 exocyst
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005902 microvillus
GO:0016020 membrane
GO:0032584 growth cone membrane
GO:0035748 myelin sheath abaxonal region
GO:0042995 cell projection
GO:0045202 synapse
GO:0090543 Flemming body


-  Descriptions from all associated GenBank mRNAs
  LF207078 - JP 2014500723-A/14581: Polycomb-Associated Non-Coding RNAs.
AK027688 - Homo sapiens cDNA FLJ14782 fis, clone NT2RP4000524, highly similar to Mus musculus Sec8 mRNA.
AF380839 - Homo sapiens secretory protein SEC8 mRNA, complete cds.
AL831989 - Homo sapiens mRNA; cDNA DKFZp451H153 (from clone DKFZp451H153); complete cds.
AK298191 - Homo sapiens cDNA FLJ61327 complete cds, highly similar to Exocyst complex component 4.
BC067263 - Homo sapiens exocyst complex component 4, mRNA (cDNA clone MGC:74812 IMAGE:6183004), complete cds.
AM393428 - Synthetic construct Homo sapiens clone IMAGE:100002367 for hypothetical protein (EXOC4 gene).
AB051486 - Homo sapiens mRNA for KIAA1699 protein, partial cds.
AK295404 - Homo sapiens cDNA FLJ53330 complete cds, highly similar to Exocyst complex component 4.
AL834475 - Homo sapiens mRNA; cDNA DKFZp762E1711 (from clone DKFZp762E1711).
AF132734 - Homo sapiens REC8 mRNA, partial cds.
AK022751 - Homo sapiens cDNA FLJ12689 fis, clone NT2RM4002565, highly similar to Mus musculus Sec8 mRNA.
MA442655 - JP 2018138019-A/14581: Polycomb-Associated Non-Coding RNAs.
BC026174 - Homo sapiens exocyst complex component 4, mRNA (cDNA clone IMAGE:4667989), complete cds.
CU693148 - Synthetic construct Homo sapiens gateway clone IMAGE:100022318 5' read EXOC4 mRNA.
KJ899399 - Synthetic construct Homo sapiens clone ccsbBroadEn_08793 EXOC4 gene, encodes complete protein.
AK095495 - Homo sapiens cDNA FLJ38176 fis, clone FCBBF1000077, highly similar to Exocyst complex component 4.
AK299927 - Homo sapiens cDNA FLJ54541 complete cds, highly similar to Exocyst complex component 4.
AK297458 - Homo sapiens cDNA FLJ61133 complete cds, highly similar to Exocyst complex component 4.
JD251029 - Sequence 232053 from Patent EP1572962.
LF361280 - JP 2014500723-A/168783: Polycomb-Associated Non-Coding RNAs.
MA596857 - JP 2018138019-A/168783: Polycomb-Associated Non-Coding RNAs.
LF361292 - JP 2014500723-A/168795: Polycomb-Associated Non-Coding RNAs.
BC020607 - Homo sapiens exocyst complex component 4, mRNA (cDNA clone IMAGE:4290847), partial cds.
LF361299 - JP 2014500723-A/168802: Polycomb-Associated Non-Coding RNAs.
MA596869 - JP 2018138019-A/168795: Polycomb-Associated Non-Coding RNAs.
MA596876 - JP 2018138019-A/168802: Polycomb-Associated Non-Coding RNAs.
LF361466 - JP 2014500723-A/168969: Polycomb-Associated Non-Coding RNAs.
MA597043 - JP 2018138019-A/168969: Polycomb-Associated Non-Coding RNAs.
LF361582 - JP 2014500723-A/169085: Polycomb-Associated Non-Coding RNAs.
MA597159 - JP 2018138019-A/169085: Polycomb-Associated Non-Coding RNAs.
LF361643 - JP 2014500723-A/169146: Polycomb-Associated Non-Coding RNAs.
JD344342 - Sequence 325366 from Patent EP1572962.
LF361644 - JP 2014500723-A/169147: Polycomb-Associated Non-Coding RNAs.
JD352159 - Sequence 333183 from Patent EP1572962.
JD173896 - Sequence 154920 from Patent EP1572962.
JD146329 - Sequence 127353 from Patent EP1572962.
JD518140 - Sequence 499164 from Patent EP1572962.
JD281894 - Sequence 262918 from Patent EP1572962.
LF361645 - JP 2014500723-A/169148: Polycomb-Associated Non-Coding RNAs.
JD126359 - Sequence 107383 from Patent EP1572962.
JD271454 - Sequence 252478 from Patent EP1572962.
JD355841 - Sequence 336865 from Patent EP1572962.
JD162472 - Sequence 143496 from Patent EP1572962.
JD199332 - Sequence 180356 from Patent EP1572962.
JD534929 - Sequence 515953 from Patent EP1572962.
JD539056 - Sequence 520080 from Patent EP1572962.
JD277077 - Sequence 258101 from Patent EP1572962.
MA597220 - JP 2018138019-A/169146: Polycomb-Associated Non-Coding RNAs.
MA597221 - JP 2018138019-A/169147: Polycomb-Associated Non-Coding RNAs.
MA597222 - JP 2018138019-A/169148: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q96A65 (Reactome details) participates in the following event(s):

R-HSA-5623524 The exocyst complex binds to RAB3IP in the ciliary targeting complex
R-HSA-264876 Insulin processing
R-HSA-1445148 Translocation of GLUT4 to the plasma membrane
R-HSA-2980736 Peptide hormone metabolism
R-HSA-5620916 VxPx cargo-targeting to cilium
R-HSA-199991 Membrane Trafficking
R-HSA-392499 Metabolism of proteins
R-HSA-5620920 Cargo trafficking to the periciliary membrane
R-HSA-5653656 Vesicle-mediated transport
R-HSA-5617833 Cilium Assembly
R-HSA-1852241 Organelle biogenesis and maintenance

-  Other Names for This Gene
  Alternate Gene Symbols: E9PED2, ENST00000253861.1, ENST00000253861.2, ENST00000253861.3, ENST00000253861.4, EXOC4_HUMAN, KIAA1699, NM_021807, Q541U8, Q96A65, Q9C0G4, Q9H9K0, Q9P102, SEC8, SEC8L1, uc317fmq.1, uc317fmq.2
UCSC ID: ENST00000253861.5_5
RefSeq Accession: NM_021807.4
Protein: Q96A65 (aka EXOC4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.