Human Gene ETV1 (ENST00000430479.6_9) from GENCODE V47lift37
  Description: ETS variant transcription factor 1, transcript variant 1 (from RefSeq NM_004956.5)
Gencode Transcript: ENST00000430479.6_9
Gencode Gene: ENSG00000006468.15_15
Transcript (Including UTRs)
   Position: hg19 chr7:13,930,854-14,029,291 Size: 98,438 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr7:13,935,491-14,028,677 Size: 93,187 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:13,930,854-14,029,291)mRNA (may differ from genome)Protein (477 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ETV1_HUMAN
DESCRIPTION: RecName: Full=ETS translocation variant 1; AltName: Full=Ets-related protein 81;
FUNCTION: Transcriptional activator that binds to DNA sequences containing the consensus pentanucleotide 5'-CGGA[AT]-3'.
INTERACTION: P78527:PRKDC; NbExp=2; IntAct=EBI-3905068, EBI-352053;
SUBCELLULAR LOCATION: Nucleus (Probable).
TISSUE SPECIFICITY: Very highly expressed in brain, highly expressed in testis, lung and heart, moderately in spleen, small intestine, pancreas and colon, weakly in liver, prostate and thymus, very weakly in skeletal muscle, kidney and ovary and not in placenta and peripheral blood leukocytes.
PTM: Sumoylated.
PTM: Phosphorylated at Ser-191 and Ser-216 by RPS6KA1 and RPS6KA5; phosphorylation activates transcriptional activity.
DISEASE: Defects in ETV1 are a cause of Ewing sarcoma (ES) [MIM:612219]. A highly malignant, metastatic, primitive small round cell tumor of bone and soft tissue that affects children and adolescents. It belongs to the Ewing sarcoma family of tumors, a group of morphologically heterogeneous neoplasms that share the same cytogenetic features. They are considered neural tumors derived from cells of the neural crest. Ewing sarcoma represents the less differentiated form of the tumors. Note=A chromosomal aberration involving ETV1 is found in patients with Erwing sarcoma. Translocation t(7;22)(p22;q12) with EWSR1.
SIMILARITY: Belongs to the ETS family.
SIMILARITY: Contains 1 ETS DNA-binding domain.
SEQUENCE CAUTION: Sequence=BAD92439.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ETV1
Diseases sorted by gene-association score: ewing sarcoma* (233), gastrointestinal stromal tumor (13), microphthalmia, isolated 1 (5), prostate cancer (5), male reproductive organ cancer (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 74.35 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 223.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -108.60388-0.280 Picture PostScript Text
3' UTR -1051.304637-0.227 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000418 - Ets
IPR006715 - ETS_PEA3_N
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00178 - Ets-domain
PF04621 - PEA3 subfamily ETS-domain transcription factor N terminal domain

SCOP Domains:
46785 - "Winged helix" DNA-binding domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
4AVP - X-ray MuPIT 4B06 - X-ray


ModBase Predicted Comparative 3D Structure on P50549
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0007411 axon guidance
GO:0007517 muscle organ development
GO:0007638 mechanosensory behavior
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048935 peripheral nervous system neuron development

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  AB209202 - Homo sapiens mRNA for ets variant gene 1 variant protein.
BC098403 - Homo sapiens ets variant 1, mRNA (cDNA clone MGC:104699 IMAGE:30345383), complete cds.
CR627389 - Homo sapiens mRNA; cDNA DKFZp781L0674 (from clone DKFZp781L0674).
AK299693 - Homo sapiens cDNA FLJ50641 complete cds, highly similar to ETS translocation variant 1.
BC106762 - Homo sapiens ets variant 1, mRNA (cDNA clone MGC:120533 IMAGE:40025690), complete cds.
BC106763 - Homo sapiens ets variant 1, mRNA (cDNA clone MGC:120534 IMAGE:40025693), complete cds.
U17163 - Human transcription factor ETV1 mRNA, complete cds.
AK294572 - Homo sapiens cDNA FLJ50494 complete cds, highly similar to ETS translocation variant 1.
AK294755 - Homo sapiens cDNA FLJ51675 complete cds, highly similar to ETS translocation variant 1.
AK293802 - Homo sapiens cDNA FLJ50459 complete cds, highly similar to ETS translocation variant 1.
BC045776 - Homo sapiens ets variant 1, mRNA (cDNA clone IMAGE:5259971), with apparent retained intron.
AK316007 - Homo sapiens cDNA, FLJ78906 complete cds, highly similar to ETS translocation variant 1.
X87175 - H.sapiens mRNA for ER81 transcription factor.
AK312863 - Homo sapiens cDNA, FLJ93307, highly similar to Homo sapiens ets variant gene 1 (ETV1), mRNA.
EU446473 - Synthetic construct Homo sapiens clone IMAGE:100070228; IMAGE:100011682; FLH257296.01L ets variant gene 1 (ETV1) gene, encodes complete protein.
KJ891126 - Synthetic construct Homo sapiens clone ccsbBroadEn_00520 ETV1 gene, encodes complete protein.
AB463032 - Synthetic construct DNA, clone: pF1KB3955, Homo sapiens ETV1 gene for ets variant gene 1, without stop codon, in Flexi system.
AK309190 - Homo sapiens cDNA, FLJ99231.
AK311134 - Homo sapiens cDNA, FLJ18176.
AK311194 - Homo sapiens cDNA, FLJ18236.
AK311089 - Homo sapiens cDNA, FLJ18131.
AK311707 - Homo sapiens cDNA, FLJ18749.
EF632110 - Homo sapiens HNRPA2B1/ETV1 fusion transcript mRNA, partial sequence.
LF209519 - JP 2014500723-A/17022: Polycomb-Associated Non-Coding RNAs.
AK055368 - Homo sapiens cDNA FLJ30806 fis, clone FEBRA2001334.
LF329240 - JP 2014500723-A/136743: Polycomb-Associated Non-Coding RNAs.
LF329239 - JP 2014500723-A/136742: Polycomb-Associated Non-Coding RNAs.
BC042950 - Homo sapiens ets variant gene 1, mRNA (cDNA clone IMAGE:5273913).
JD492783 - Sequence 473807 from Patent EP1572962.
JD433233 - Sequence 414257 from Patent EP1572962.
JD305908 - Sequence 286932 from Patent EP1572962.
JD298119 - Sequence 279143 from Patent EP1572962.
AF070641 - Homo sapiens clone 24421 mRNA sequence.
JD349165 - Sequence 330189 from Patent EP1572962.
JD167374 - Sequence 148398 from Patent EP1572962.
JD298951 - Sequence 279975 from Patent EP1572962.
LF209891 - JP 2014500723-A/17394: Polycomb-Associated Non-Coding RNAs.
JD350346 - Sequence 331370 from Patent EP1572962.
JD396438 - Sequence 377462 from Patent EP1572962.
JD350405 - Sequence 331429 from Patent EP1572962.
JD301352 - Sequence 282376 from Patent EP1572962.
JD488690 - Sequence 469714 from Patent EP1572962.
JD310636 - Sequence 291660 from Patent EP1572962.
HM245386 - Homo sapiens KLK2-ETV1 breakpoint junction transcript variant 2 mRNA sequence.
HM245385 - Homo sapiens KLK2-ETV1 breakpoint junction transcript variant 1 mRNA sequence.
MA564817 - JP 2018138019-A/136743: Polycomb-Associated Non-Coding RNAs.
MA564816 - JP 2018138019-A/136742: Polycomb-Associated Non-Coding RNAs.
MA445096 - JP 2018138019-A/17022: Polycomb-Associated Non-Coding RNAs.
MA445468 - JP 2018138019-A/17394: Polycomb-Associated Non-Coding RNAs.
LF332455 - JP 2014500723-A/139958: Polycomb-Associated Non-Coding RNAs.
JD436316 - Sequence 417340 from Patent EP1572962.
JD351650 - Sequence 332674 from Patent EP1572962.
JD279955 - Sequence 260979 from Patent EP1572962.
MA568032 - JP 2018138019-A/139958: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A4D118, B2R768, B7Z2I4, B7Z618, B7Z9P2, C9JT37, E9PHB1, ENST00000430479.1, ENST00000430479.2, ENST00000430479.3, ENST00000430479.4, ENST00000430479.5, ER81 , ETV1 , ETV1_HUMAN, F5GXR2, NM_004956, O75849, P50549, Q4KMQ6, Q59GA7, Q6AI30, Q9UQ71, Q9Y636, uc319zht.1, uc319zht.2
UCSC ID: ENST00000430479.6_9
RefSeq Accession: NM_004956.5
Protein: P50549 (aka ETV1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.