Human Gene ENY2 (ENST00000521688.6_7) from GENCODE V47lift37
  Description: ENY2 transcription and export complex 2 subunit, transcript variant 3 (from RefSeq NR_036471.2)
Gencode Transcript: ENST00000521688.6_7
Gencode Gene: ENSG00000120533.13_11
Transcript (Including UTRs)
   Position: hg19 chr8:110,346,576-110,358,183 Size: 11,608 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr8:110,346,698-110,355,710 Size: 9,013 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:110,346,576-110,358,183)mRNA (may differ from genome)Protein (101 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ENY2_HUMAN
DESCRIPTION: RecName: Full=Enhancer of yellow 2 transcription factor homolog;
FUNCTION: Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for transcription. Required for nuclear receptor-mediated transactivation. May also participate in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery (By similarity).
SUBUNIT: Component of some SAGA transcription coactivator-HAT complexes, at least composed of ATXN7, ATXN7L3, ENY2, GCN5L2, SUPT3H, TAF10, TRRAP and USP22. Within the SAGA complex, ATXN7L3, ENY2 and USP22 form a subcomplex required for histone deubiquitination. Interacts directly with ATXN7L3.
SUBCELLULAR LOCATION: Nucleus (Probable).
SIMILARITY: Belongs to the ENY2 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ENY2
Diseases sorted by gene-association score: warsaw breakage syndrome (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.29 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 655.58 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -41.90122-0.343 Picture PostScript Text
3' UTR -540.902473-0.219 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018783 - TF_enhancer_of_yellow_2

Pfam Domains:
PF10163 - Transcription factor e(y)2

SCOP Domains:
68906 - SAP domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
4DHX - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9NPA8
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003682 chromatin binding
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity

Biological Process:
GO:0006325 chromatin organization
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006406 mRNA export from nucleus
GO:0015031 protein transport
GO:0016578 histone deubiquitination
GO:0016973 poly(A)+ mRNA export from nucleus
GO:0045893 positive regulation of transcription, DNA-templated
GO:0051028 mRNA transport
GO:0061179 negative regulation of insulin secretion involved in cellular response to glucose stimulus

Cellular Component:
GO:0000124 SAGA complex
GO:0005634 nucleus
GO:0005643 nuclear pore
GO:0005654 nucleoplasm
GO:0005739 mitochondrion
GO:0071819 DUBm complex


-  Descriptions from all associated GenBank mRNAs
  AK095651 - Homo sapiens cDNA FLJ38332 fis, clone FCBBF3025528.
AK316560 - Homo sapiens cDNA, FLJ92111, Homo sapiens DC6 protein (DC6), mRNA.
AF201940 - Homo sapiens DC6 (DC6) mRNA, complete cds.
AF173296 - Homo sapiens e(y)2 homolog mRNA, complete cds.
AK000487 - Homo sapiens cDNA FLJ20480 fis, clone KAT07429.
LF344028 - JP 2014500723-A/151531: Polycomb-Associated Non-Coding RNAs.
AK290752 - Homo sapiens cDNA FLJ76549 complete cds, highly similar to Homo sapiens enhancer of yellow 2 homolog (Drosophila) (ENY2), mRNA.
BC051878 - Homo sapiens enhancer of yellow 2 homolog (Drosophila), mRNA (cDNA clone IMAGE:5221411), with apparent retained intron.
BC007870 - Homo sapiens enhancer of yellow 2 homolog (Drosophila), mRNA (cDNA clone MGC:14435 IMAGE:4303290), complete cds.
JD487343 - Sequence 468367 from Patent EP1572962.
JD466272 - Sequence 447296 from Patent EP1572962.
LF344027 - JP 2014500723-A/151530: Polycomb-Associated Non-Coding RNAs.
CR457183 - Homo sapiens full open reading frame cDNA clone RZPDo834E038D for gene DC6, DC6 protein; complete cds, incl. stopcodon.
KJ899278 - Synthetic construct Homo sapiens clone ccsbBroadEn_08672 ENY2 gene, encodes complete protein.
BX648621 - Homo sapiens mRNA; cDNA DKFZp686M21235 (from clone DKFZp686M21235).
BX537648 - Homo sapiens mRNA; cDNA DKFZp686C03204 (from clone DKFZp686C03204).
JD549603 - Sequence 530627 from Patent EP1572962.
MA579605 - JP 2018138019-A/151531: Polycomb-Associated Non-Coding RNAs.
MA579604 - JP 2018138019-A/151530: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NPA8 (Reactome details) participates in the following event(s):

R-HSA-3301237 KAT2 complexes acetylate histone H3
R-HSA-3214847 HATs acetylate histones
R-HSA-3247509 Chromatin modifying enzymes
R-HSA-4839726 Chromatin organization

-  Other Names for This Gene
  Alternate Gene Symbols: B2RE52, DC6, ENST00000521688.1, ENST00000521688.2, ENST00000521688.3, ENST00000521688.4, ENST00000521688.5, ENY2 , ENY2_HUMAN, G3V117, NR_036471, Q9NPA8, uc323vkj.1, uc323vkj.2
UCSC ID: ENST00000521688.6_7
RefSeq Accession: NM_020189.6
Protein: Q9NPA8 (aka ENY2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.