Human Gene ENPP1 (ENST00000647893.1_4) from GENCODE V47lift37
  Description: ectonucleotide pyrophosphatase/phosphodiesterase 1 (from RefSeq NM_006208.3)
Gencode Transcript: ENST00000647893.1_4
Gencode Gene: ENSG00000197594.14_11
Transcript (Including UTRs)
   Position: hg19 chr6:132,129,160-132,216,295 Size: 87,136 Total Exon Count: 25 Strand: +
Coding Region
   Position: hg19 chr6:132,129,176-132,211,651 Size: 82,476 Coding Exon Count: 25 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:132,129,160-132,216,295)mRNA (may differ from genome)Protein (925 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ENPP1_HUMAN
DESCRIPTION: RecName: Full=Ectonucleotide pyrophosphatase/phosphodiesterase family member 1; Short=E-NPP 1; AltName: Full=Membrane component chromosome 6 surface marker 1; AltName: Full=Phosphodiesterase I/nucleotide pyrophosphatase 1; AltName: Full=Plasma-cell membrane glycoprotein PC-1; Includes: RecName: Full=Alkaline phosphodiesterase I; EC=3.1.4.1; Includes: RecName: Full=Nucleotide pyrophosphatase; Short=NPPase; EC=3.6.1.9;
FUNCTION: Involved primarily in ATP hydrolysis at the plasma membrane. Plays a role in regulating pyrophosphate levels, and functions in bone mineralization and soft tissue calcification. In vitro, has a broad specificity, hydrolyzing other nucleoside 5' triphosphates such as GTP, CTP, TTP and UTP to their corresponding monophosphates with release of pyrophosphate and diadenosine polyphosphates, and also 3',5'-cAMP to AMP. May also be involved in the regulation of the availability of nucleotide sugars in the endoplasmic reticulum and Golgi, and the regulation of purinergic signaling. Appears to modulate insulin sensitivity.
CATALYTIC ACTIVITY: Hydrolytically removes 5'-nucleotides successively from the 3'-hydroxy termini of 3'-hydroxy-terminated oligonucleotides.
CATALYTIC ACTIVITY: A dinucleotide + H(2)O = 2 mononucleotides.
COFACTOR: Binds 2 divalent metal cations per subunit (Probable).
ENZYME REGULATION: At low concentrations of ATP, a phosphorylated intermediate is formed which inhibits further hydrolysis.
SUBUNIT: Homodimer; disulfide-linked. Interacts with INSR.
SUBCELLULAR LOCATION: Membrane; Single-pass type II membrane protein. Basolateral cell membrane; Single-pass type II membrane protein. Note=Targeted to the basolateral membrane in polarized epithelial cells and in hepatocytes, and to matrix vesicles in osteoblasts. In bile duct cells and cancer cells, located to the apical cytoplasmic side.
TISSUE SPECIFICITY: Expressed in plasma cells and also in a number of non-lymphoid tissues, including the distal convoluted tubule of the kidney, chondrocytes and epididymis.
DOMAIN: The di-leucine motif is required for basolateral targeting in epithelial cells, and for targeting to matrix vesicles derived from mineralizing cells (By similarity).
PTM: Autophosphorylated as part of the catalytic cycle of phosphodiesterase/pyrophosphatase activity.
PTM: N-glycosylated.
PTM: It has been suggested that the active SMB domain may be permitted considerable disulfide bond heterogeneity or variability, thus two alternate disulfide patterns based on 3D structures are described with 1 disulfide bond conserved in both.
DISEASE: Defects in ENPP1 are a cause of increased susceptibility for ossification of the posterior longitudinal ligament of the spine (OPLL) [MIM:602475]. OPLL is a common form of human myelopathy with a prevalence of as much as 4% in a variety of ethnic groups.
DISEASE: Defects in ENPP1 are the cause of arterial calcification of infancy, generalized, type 1 (GACI1) [MIM:208000]. A severe autosomal recessive disorder characterized by calcification of the internal elastic lamina of muscular arteries and stenosis due to myointimal proliferation. The disorder is often fatal within the first 6 months of life because of myocardial ischemia resulting in refractory heart failure.
DISEASE: Defects in ENPP1 are associated with obesity, glucose intolerance, and type II diabetes non-insulin dependent (NIDDM) [MIM:125853].
DISEASE: Defects in ENPP1 are the cause of rickets hypophosphatemic autosomal recessive type 2 (ARHR2) [MIM:613312]. ARHR2 is a hereditary form of hypophosphatemic rickets, a disorder of proximal renal tubule function that causes phosphate loss, hypophosphatemia and skeletal deformities, including rickets and osteomalacia unresponsive to vitamin D. Symptoms are bone pain, fractures and growth abnormalities.
SIMILARITY: Belongs to the nucleotide pyrophosphatase/phosphodiesterase family.
SIMILARITY: Contains 2 SMB (somatomedin-B) domains.
CAUTION: It is uncertain whether Met-1 or Met-53 is the initiator.
SEQUENCE CAUTION: Sequence=AAA63237.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH59375.2; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAA02054.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ENPP1
Diseases sorted by gene-association score: cole disease* (1689), hypophosphatemic rickets, autosomal recessive, 2* (1330), arterial calcification, generalized, of infancy, 1* (1325), arterial calcification of infancy* (801), autosomal recessive hypophosphatemic rickets* (376), ossification of the posterior longitudinal ligament of spine* (315), pseudoxanthoma elasticum* (188), obesity* (165), diabetes mellitus, noninsulin-dependent* (145), obesity susceptibility, enpp1-related* (41), hypophosphatemic rickets (21), chondrocalcinosis (19), tendinopathy (18), rickets (16), hypophosphatasia (14), hypophosphatemia (12), calcinosis (11), autosomal dominant polycystic kidney disease (9), osseous heteroplasia, progressive (9), hypophosphatasia, adult (7), glucose intolerance (7), tympanic membrane disease (6), hypertriglyceridemia (6), hutchinson-gilford progeria (5), polycystic liver disease 1 (4), hypophosphatemic rickets with hypercalciuria (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.9016-0.244 Picture PostScript Text
3' UTR -1264.504644-0.272 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017849 - Alkaline_Pase-like_a/b/a
IPR017850 - Alkaline_phosphatase_core
IPR001604 - DNA/RNA_non-sp_Endonuclease
IPR024873 - E-NPP
IPR020821 - Extracellular_endonuc_su_A
IPR002591 - Phosphodiest/P_Trfase
IPR020436 - Somatomedin_B_chordata
IPR001212 - Somatomedin_B_dom

Pfam Domains:
PF01033 - Somatomedin B domain
PF01223 - DNA/RNA non-specific endonuclease
PF01663 - Type I phosphodiesterase / nucleotide pyrophosphatase

SCOP Domains:
47473 - EF-hand
53649 - Alkaline phosphatase-like
54060 - His-Me finger endonucleases
90188 - Somatomedin B domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2YS0 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on P22413
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding
GO:0003824 catalytic activity
GO:0004527 exonuclease activity
GO:0004528 phosphodiesterase I activity
GO:0004551 nucleotide diphosphatase activity
GO:0005044 scavenger receptor activity
GO:0005158 insulin receptor binding
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0030247 polysaccharide binding
GO:0035529 NADH pyrophosphatase activity
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0047429 nucleoside-triphosphate diphosphatase activity
GO:0050656 3'-phosphoadenosine 5'-phosphosulfate binding

Biological Process:
GO:0006091 generation of precursor metabolites and energy
GO:0006771 riboflavin metabolic process
GO:0006796 phosphate-containing compound metabolic process
GO:0006898 receptor-mediated endocytosis
GO:0006955 immune response
GO:0008152 metabolic process
GO:0009143 nucleoside triphosphate catabolic process
GO:0030308 negative regulation of cell growth
GO:0030500 regulation of bone mineralization
GO:0030505 inorganic diphosphate transport
GO:0030643 cellular phosphate ion homeostasis
GO:0030730 sequestering of triglyceride
GO:0031214 biomineral tissue development
GO:0031953 negative regulation of protein autophosphorylation
GO:0032869 cellular response to insulin stimulus
GO:0045599 negative regulation of fat cell differentiation
GO:0045719 negative regulation of glycogen biosynthetic process
GO:0046034 ATP metabolic process
GO:0046325 negative regulation of glucose import
GO:0046627 negative regulation of insulin receptor signaling pathway
GO:0050427 3'-phosphoadenosine 5'-phosphosulfate metabolic process
GO:0090305 nucleic acid phosphodiester bond hydrolysis

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005765 lysosomal membrane
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016323 basolateral plasma membrane


-  Descriptions from all associated GenBank mRNAs
  KJ904524 - Synthetic construct Homo sapiens clone ccsbBroadEn_13918 ENPP1-like gene, encodes complete protein.
LP896405 - Sequence 1269 from Patent EP3253886.
BC059375 - Homo sapiens ectonucleotide pyrophosphatase/phosphodiesterase 1, mRNA (cDNA clone MGC:71620 IMAGE:30341060), complete cds.
D12485 - Homo sapiens mRNA for nucleotide pyrophosphatase, complete cds.
M57736 - Human plasma cell membrane glycoprotein (PC-1) mRNA, complete cds.
BC033008 - Homo sapiens cDNA clone IMAGE:4822640, containing frame-shift errors.
AK314870 - Homo sapiens cDNA, FLJ95771, highly similar to Homo sapiens ectonucleotide pyrophosphatase/phosphodiesterase 1 (ENPP1), mRNA.
BX537580 - Homo sapiens mRNA; cDNA DKFZp686P13218 (from clone DKFZp686P13218).
JD188373 - Sequence 169397 from Patent EP1572962.
JD142845 - Sequence 123869 from Patent EP1572962.
JD182442 - Sequence 163466 from Patent EP1572962.
JD082326 - Sequence 63350 from Patent EP1572962.
JD438971 - Sequence 419995 from Patent EP1572962.
JD219303 - Sequence 200327 from Patent EP1572962.
JD290596 - Sequence 271620 from Patent EP1572962.
LF208715 - JP 2014500723-A/16218: Polycomb-Associated Non-Coding RNAs.
LF321971 - JP 2014500723-A/129474: Polycomb-Associated Non-Coding RNAs.
LF321970 - JP 2014500723-A/129473: Polycomb-Associated Non-Coding RNAs.
LF321969 - JP 2014500723-A/129472: Polycomb-Associated Non-Coding RNAs.
LF321968 - JP 2014500723-A/129471: Polycomb-Associated Non-Coding RNAs.
LF321967 - JP 2014500723-A/129470: Polycomb-Associated Non-Coding RNAs.
LF321966 - JP 2014500723-A/129469: Polycomb-Associated Non-Coding RNAs.
JD541236 - Sequence 522260 from Patent EP1572962.
JD070108 - Sequence 51132 from Patent EP1572962.
LF321965 - JP 2014500723-A/129468: Polycomb-Associated Non-Coding RNAs.
LF321964 - JP 2014500723-A/129467: Polycomb-Associated Non-Coding RNAs.
LF321963 - JP 2014500723-A/129466: Polycomb-Associated Non-Coding RNAs.
MA557548 - JP 2018138019-A/129474: Polycomb-Associated Non-Coding RNAs.
MA557547 - JP 2018138019-A/129473: Polycomb-Associated Non-Coding RNAs.
MA557546 - JP 2018138019-A/129472: Polycomb-Associated Non-Coding RNAs.
MA557545 - JP 2018138019-A/129471: Polycomb-Associated Non-Coding RNAs.
MA557544 - JP 2018138019-A/129470: Polycomb-Associated Non-Coding RNAs.
MA557543 - JP 2018138019-A/129469: Polycomb-Associated Non-Coding RNAs.
MA557542 - JP 2018138019-A/129468: Polycomb-Associated Non-Coding RNAs.
MA557541 - JP 2018138019-A/129467: Polycomb-Associated Non-Coding RNAs.
MA557540 - JP 2018138019-A/129466: Polycomb-Associated Non-Coding RNAs.
MA444292 - JP 2018138019-A/16218: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7184 - pyrimidine deoxyribonucleotides de novo biosynthesis
PWY-7211 - superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis

BioCarta from NCI Cancer Genome Anatomy Project
h_npp1Pathway - Regulators of Bone Mineralization

Reactome (by CSHL, EBI, and GO)

Protein P22413 (Reactome details) participates in the following event(s):

R-HSA-196955 2xENPP1 hydrolyzes FAD to FMN
R-HSA-196843 Vitamin B2 (riboflavin) metabolism
R-HSA-199220 Vitamin B5 (pantothenate) metabolism
R-HSA-196849 Metabolism of water-soluble vitamins and cofactors
R-HSA-196854 Metabolism of vitamins and cofactors
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENPP1 , ENPP1_HUMAN, M6S1, NM_006208, NPPS , P22413, PC1 , PDNP1, Q5T9R6, Q9NPZ3, Q9P1P6, Q9UP61, Q9Y6K3, uc328obt.1, uc328obt.2
UCSC ID: ENST00000647893.1_4
RefSeq Accession: NM_006208.3
Protein: P22413 (aka ENPP1_HUMAN or NPP1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ENPP1:
gaci (Generalized Arterial Calcification of Infancy)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.