Human Gene DPF2 (ENST00000528416.6_8) from GENCODE V47lift37
  Description: double PHD fingers 2, transcript variant 1 (from RefSeq NM_006268.5)
Gencode Transcript: ENST00000528416.6_8
Gencode Gene: ENSG00000133884.11_12
Transcript (Including UTRs)
   Position: hg19 chr11:65,101,323-65,121,733 Size: 20,411 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr11:65,101,358-65,119,230 Size: 17,873 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:65,101,323-65,121,733)mRNA (may differ from genome)Protein (391 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: REQU_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein ubi-d4; AltName: Full=Apoptosis response zinc finger protein; AltName: Full=BRG1-associated factor 45D; Short=BAF45D; AltName: Full=D4, zinc and double PHD fingers family 2; AltName: Full=Protein requiem;
FUNCTION: May be a transcription factor required for the apoptosis response following survival factor withdrawal from myeloid cells. Might also have a role in the development and maturation of lymphoid cells.
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=30% nuclear. 70% cytoplasmic.
TISSUE SPECIFICITY: Ubiquitous.
SIMILARITY: Belongs to the requiem/DPF family.
SIMILARITY: Contains 1 C2H2-type zinc finger.
SIMILARITY: Contains 2 PHD-type zinc fingers.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/req/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 38.23 RPKM in Testis
Total median expression: 999.14 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -8.7035-0.249 Picture PostScript Text
3' UTR -877.302503-0.350 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR025750 - Requiem/DPF_N_dom
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd
IPR011011 - Znf_FYVE_PHD
IPR001965 - Znf_PHD
IPR019787 - Znf_PHD-finger
IPR001841 - Znf_RING
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF00628 - PHD-finger
PF14051 - N-terminal domain of DPF2/REQ.

SCOP Domains:
57667 - beta-beta-alpha zinc fingers
57889 - Cysteine-rich domain
57903 - FYVE/PHD zinc finger

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3IUF - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q92785
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003676 nucleic acid binding
GO:0005515 protein binding
GO:0046872 metal ion binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006915 apoptotic process
GO:0097190 apoptotic signaling pathway

Cellular Component:
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005829 cytosol
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  AK313408 - Homo sapiens cDNA, FLJ93944.
AK300061 - Homo sapiens cDNA FLJ54147 complete cds, highly similar to Zinc-finger protein ubi-d4.
BX641135 - Homo sapiens mRNA; cDNA DKFZp686K09123 (from clone DKFZp686K09123).
BC014889 - Homo sapiens D4, zinc and double PHD fingers family 2, mRNA (cDNA clone MGC:10180 IMAGE:3908181), complete cds.
AK291944 - Homo sapiens cDNA FLJ76908 complete cds, highly similar to Homo sapiens D4, zinc and double PHD fingers family 2 (DPF2), mRNA.
JD468650 - Sequence 449674 from Patent EP1572962.
U94585 - Homo sapiens requiem homolog (hsReq) mRNA, complete cds.
AF001433 - Human requiem (HREQ) mRNA, complete cds.
AB463002 - Synthetic construct DNA, clone: pF1KB5477, Homo sapiens DPF2 gene for D4, zinc and double PHD fingers family 2, without stop codon, in Flexi system.
BT006718 - Homo sapiens requiem, apoptosis response zinc finger gene mRNA, complete cds.
DQ892397 - Synthetic construct clone IMAGE:100005027; FLH185960.01X; RZPDo839H02148D D4, zinc and double PHD fingers family 2 (DPF2) gene, encodes complete protein.
DQ895612 - Synthetic construct Homo sapiens clone IMAGE:100010072; FLH185956.01L; RZPDo839H02147D D4, zinc and double PHD fingers family 2 (DPF2) gene, encodes complete protein.
KJ891996 - Synthetic construct Homo sapiens clone ccsbBroadEn_01390 DPF2 gene, encodes complete protein.
AK096796 - Homo sapiens cDNA FLJ39477 fis, clone PROST2013327.
JD497195 - Sequence 478219 from Patent EP1572962.
JD235705 - Sequence 216729 from Patent EP1572962.
JD298422 - Sequence 279446 from Patent EP1572962.
JD262731 - Sequence 243755 from Patent EP1572962.
JD137451 - Sequence 118475 from Patent EP1572962.
JD275142 - Sequence 256166 from Patent EP1572962.
JD159246 - Sequence 140270 from Patent EP1572962.
JD126815 - Sequence 107839 from Patent EP1572962.
JD293887 - Sequence 274911 from Patent EP1572962.
DQ590212 - Homo sapiens piRNA piR-57324, complete sequence.
JD347460 - Sequence 328484 from Patent EP1572962.
JD064870 - Sequence 45894 from Patent EP1572962.
JD290780 - Sequence 271804 from Patent EP1572962.
JD417845 - Sequence 398869 from Patent EP1572962.
JD145666 - Sequence 126690 from Patent EP1572962.
JD507510 - Sequence 488534 from Patent EP1572962.
JD443869 - Sequence 424893 from Patent EP1572962.
JD460722 - Sequence 441746 from Patent EP1572962.
JD557045 - Sequence 538069 from Patent EP1572962.
JD487007 - Sequence 468031 from Patent EP1572962.
JD465253 - Sequence 446277 from Patent EP1572962.
JD403206 - Sequence 384230 from Patent EP1572962.
JD539566 - Sequence 520590 from Patent EP1572962.
JD315595 - Sequence 296619 from Patent EP1572962.
JD249340 - Sequence 230364 from Patent EP1572962.
JD377145 - Sequence 358169 from Patent EP1572962.
JD283069 - Sequence 264093 from Patent EP1572962.
JD175295 - Sequence 156319 from Patent EP1572962.
JD187575 - Sequence 168599 from Patent EP1572962.
JD086047 - Sequence 67071 from Patent EP1572962.
JD261373 - Sequence 242397 from Patent EP1572962.
JD203438 - Sequence 184462 from Patent EP1572962.
JD260817 - Sequence 241841 from Patent EP1572962.
JD512135 - Sequence 493159 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_bcellsurvivalPathway - B Cell Survival Pathway

-  Other Names for This Gene
  Alternate Gene Symbols: A8K7C9, B4DT58, BAF45D, ENST00000528416.1, ENST00000528416.2, ENST00000528416.3, ENST00000528416.4, ENST00000528416.5, NM_006268, Q92785, REQ, REQU_HUMAN, UBID4, uc324eql.1, uc324eql.2
UCSC ID: ENST00000528416.6_8
RefSeq Accession: NM_006268.5
Protein: Q92785 (aka REQU_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene DPF2:
coffin-siris (Coffin-Siris Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.