Human Gene DOK4 (ENST00000340099.10_9) from GENCODE V47lift37
  Description: docking protein 4, transcript variant 1 (from RefSeq NM_018110.5)
Gencode Transcript: ENST00000340099.10_9
Gencode Gene: ENSG00000125170.11_15
Transcript (Including UTRs)
   Position: hg19 chr16:57,505,834-57,520,405 Size: 14,572 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr16:57,507,289-57,513,419 Size: 6,131 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:57,505,834-57,520,405)mRNA (may differ from genome)Protein (326 aa)
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-  Comments and Description Text from UniProtKB
  ID: DOK4_HUMAN
DESCRIPTION: RecName: Full=Docking protein 4; AltName: Full=Downstream of tyrosine kinase 4; AltName: Full=Insulin receptor substrate 5; Short=IRS-5; Short=IRS5;
FUNCTION: DOK proteins are enzymatically inert adaptor or scaffolding proteins. They provide a docking platform for the assembly of multimolecular signaling complexes. DOK4 functions in RET-mediated neurite outgrowth and plays a positive role in activation of the MAP kinase pathway (By similarity). Putative link with downstream effectors of RET in neuronal differentiation. May be involved in the regulation of the immune response induced by T-cells.
SUBUNIT: Interacts with RET and TEK/TIE2. Interaction with RET is mediated through the PTB domain and requires phosphorylation of RET 'Tyr-1062' (By similarity).
TISSUE SPECIFICITY: Widely expressed. High expression in skeletal muscle, heart, kidney and liver. Weaker expression in spleen, lung and small intestine, brain, heart and. Expressed in both resting and activated peripheral blood T-cells.
DOMAIN: PTB domain mediates receptor interaction (By similarity).
PTM: Phosphorylated on tyrosine residues in response to insulin, IGF1 or RET stimulation.
SIMILARITY: Belongs to the DOK family. Type B subfamily.
SIMILARITY: Contains 1 IRS-type PTB domain.
SIMILARITY: Contains 1 PH domain.
SEQUENCE CAUTION: Sequence=AAC24310.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.31 RPKM in Colon - Transverse
Total median expression: 210.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -186.30370-0.504 Picture PostScript Text
3' UTR -554.101455-0.381 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002404 - Insln_rcpt_S1
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology

Pfam Domains:
PF02174 - PTB domain (IRS-1 type)

SCOP Domains:
50729 - PH domain-like

ModBase Predicted Comparative 3D Structure on Q8TEW6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0007411 axon guidance

Cellular Component:
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LF209000 - JP 2014500723-A/16503: Polycomb-Associated Non-Coding RNAs.
BC001540 - Homo sapiens docking protein 4, mRNA (cDNA clone MGC:962 IMAGE:2988350), complete cds.
BC003541 - Homo sapiens docking protein 4, mRNA (cDNA clone MGC:10806 IMAGE:3611472), complete cds.
JD264975 - Sequence 245999 from Patent EP1572962.
JD474373 - Sequence 455397 from Patent EP1572962.
JD291456 - Sequence 272480 from Patent EP1572962.
JD431141 - Sequence 412165 from Patent EP1572962.
JD363522 - Sequence 344546 from Patent EP1572962.
AK001350 - Homo sapiens cDNA FLJ10488 fis, clone NT2RP2000224.
JD123213 - Sequence 104237 from Patent EP1572962.
JD397505 - Sequence 378529 from Patent EP1572962.
JD150359 - Sequence 131383 from Patent EP1572962.
JD053610 - Sequence 34634 from Patent EP1572962.
JD456448 - Sequence 437472 from Patent EP1572962.
JD050018 - Sequence 31042 from Patent EP1572962.
JD157272 - Sequence 138296 from Patent EP1572962.
JD500433 - Sequence 481457 from Patent EP1572962.
JD119827 - Sequence 100851 from Patent EP1572962.
JD276796 - Sequence 257820 from Patent EP1572962.
JD326731 - Sequence 307755 from Patent EP1572962.
JD264989 - Sequence 246013 from Patent EP1572962.
JD076682 - Sequence 57706 from Patent EP1572962.
JD251828 - Sequence 232852 from Patent EP1572962.
JD181853 - Sequence 162877 from Patent EP1572962.
JD203423 - Sequence 184447 from Patent EP1572962.
JD455220 - Sequence 436244 from Patent EP1572962.
JD098294 - Sequence 79318 from Patent EP1572962.
JD375333 - Sequence 356357 from Patent EP1572962.
JD246279 - Sequence 227303 from Patent EP1572962.
JD126696 - Sequence 107720 from Patent EP1572962.
JD413153 - Sequence 394177 from Patent EP1572962.
JD280975 - Sequence 261999 from Patent EP1572962.
JD189061 - Sequence 170085 from Patent EP1572962.
JD540002 - Sequence 521026 from Patent EP1572962.
JD123082 - Sequence 104106 from Patent EP1572962.
JD343112 - Sequence 324136 from Patent EP1572962.
JD142134 - Sequence 123158 from Patent EP1572962.
JD408921 - Sequence 389945 from Patent EP1572962.
JD139428 - Sequence 120452 from Patent EP1572962.
KJ894243 - Synthetic construct Homo sapiens clone ccsbBroadEn_03637 DOK4 gene, encodes complete protein.
AF466369 - Homo sapiens downstream of tyrosine kinase 4 (DOK4) mRNA, complete cds.
AK315426 - Homo sapiens cDNA, FLJ96481, highly similar to Homo sapiens docking protein 4 (DOK4), mRNA.
DQ893008 - Synthetic construct clone IMAGE:100005638; FLH191630.01X; RZPDo839F0477D docking protein 4 (DOK4) gene, encodes complete protein.
DQ896254 - Synthetic construct Homo sapiens clone IMAGE:100010714; FLH191626.01L; RZPDo839F0467D docking protein 4 (DOK4) gene, encodes complete protein.
AB463576 - Synthetic construct DNA, clone: pF1KB8139, Homo sapiens DOK4 gene for docking protein 4, without stop codon, in Flexi system.
CU678482 - Synthetic construct Homo sapiens gateway clone IMAGE:100018955 5' read DOK4 mRNA.
AK307270 - Homo sapiens cDNA, FLJ97218.
JD074546 - Sequence 55570 from Patent EP1572962.
JD068339 - Sequence 49363 from Patent EP1572962.
JD187161 - Sequence 168185 from Patent EP1572962.
JD076568 - Sequence 57592 from Patent EP1572962.
JD199579 - Sequence 180603 from Patent EP1572962.
JD470977 - Sequence 452001 from Patent EP1572962.
JD401092 - Sequence 382116 from Patent EP1572962.
JD464587 - Sequence 445611 from Patent EP1572962.
MA444577 - JP 2018138019-A/16503: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8TEW6 (Reactome details) participates in the following event(s):

R-HSA-8855617 2x p-5Y-RET:GDNF:GFRA complexes binds DOK1,DOK2,DOK4,DOK5,DOK6
R-HSA-8853659 RET signaling
R-HSA-422475 Axon guidance
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: DOK4_HUMAN, ENST00000340099.1, ENST00000340099.2, ENST00000340099.3, ENST00000340099.4, ENST00000340099.5, ENST00000340099.6, ENST00000340099.7, ENST00000340099.8, ENST00000340099.9, NM_018110, O75209, Q8TEW6, Q9BTP2, Q9NVV3, uc317voj.1, uc317voj.2
UCSC ID: ENST00000340099.10_9
RefSeq Accession: NM_018110.5
Protein: Q8TEW6 (aka DOK4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.