Human Gene DLG4 (ENST00000399506.9_13) from GENCODE V47lift37
  Description: discs large MAGUK scaffold protein 4, transcript variant 4 (from RefSeq NM_001321075.3)
Gencode Transcript: ENST00000399506.9_13
Gencode Gene: ENSG00000132535.23_20
Transcript (Including UTRs)
   Position: hg19 chr17:7,090,506-7,120,946 Size: 30,441 Total Exon Count: 20 Strand: -
Coding Region
   Position: hg19 chr17:7,094,027-7,120,466 Size: 26,440 Coding Exon Count: 20 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:7,090,506-7,120,946)mRNA (may differ from genome)Protein (724 aa)
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-  Comments and Description Text from UniProtKB
  ID: DLG4_HUMAN
DESCRIPTION: RecName: Full=Disks large homolog 4; AltName: Full=Postsynaptic density protein 95; Short=PSD-95; AltName: Full=Synapse-associated protein 90; Short=SAP-90; Short=SAP90;
FUNCTION: Interacts with the cytoplasmic tail of NMDA receptor subunits and shaker-type potassium channels. Required for synaptic plasticity associated with NMDA receptor signaling. Overexpression or depletion of DLG4 changes the ratio of excitatory to inhibitory synapses in hippocampal neurons. May reduce the amplitude of ASIC3 acid-evoked currents by retaining the channel intracellularly. May regulate the intracellular trafficking of ADR1B (By similarity).
SUBUNIT: Interacts with ANKS1B, KLHL17 and PRR7 (By similarity). Interacts through its PDZ domains with NETO1. Interacts through its first two PDZ domains with GRIN2A, GRIN2B, GRIN2C, GRIN2D, ASIC3, certain splice forms of GRIN1, KCND2, CXADR and SYNGAP1. Interacts through its second PDZ domain with the PDZ domain of NOS1 or the C-terminus of CAPON. May interact with HTR2A. Interacts through its guanylate kinase-like domain with DLGAP1/GKAP, DLGAP2, DLGAP3, DLGAP4, MAP1A and BEGAIN. Interacts through its third PDZ domain with CRIPT (By similarity). Interacts through its first two PDZ domains with KCNA1, KCNA2, KCNA3, KCNA4 and ERBB4. Interacts through its first PDZ domain with GRIK2, KCNA4 and CRIPT. Interacts through its third PDZ domain with NLGN1, and probably with NLGN2 and NLGN3. Interacts through its guanylate kinase-like domain with KIF13B. Isoform 2 interacts through an L27 domain with HGS/HRS and the first L27 domain of CASK. Interacts with LRFN1, LRFN2 and LRFN4. Interacts with ANO2, ADAM22 and LGI1 (By similarity). Interacts with FRMPD4 (via C- terminus). Interacts (via PDZ1 and PDZ2 domains) with LRRC4; LRRC4B and SEMA4C. Interacts (via guanylate kinase-like domain) with SIPA1L1 (By similarity).
INTERACTION: P97836-5:Dlgap1 (xeno); NbExp=3; IntAct=EBI-80389, EBI-6269434; Q15303:ERBB4; NbExp=6; IntAct=EBI-80389, EBI-80371; P10499:Kcna1 (xeno); NbExp=2; IntAct=EBI-80389, EBI-631463; P63142:Kcna2 (xeno); NbExp=2; IntAct=EBI-80389, EBI-631446; P15384:Kcna3 (xeno); NbExp=2; IntAct=EBI-80389, EBI-631478; P15385:Kcna4 (xeno); NbExp=9; IntAct=EBI-80389, EBI-631417; O60333-3:KIF1B; NbExp=4; IntAct=EBI-80389, EBI-465669;
SUBCELLULAR LOCATION: Cell membrane; Peripheral membrane protein. Cell junction, synapse, postsynaptic cell membrane, postsynaptic density. Cell junction, synapse. Cell junction, synapse, synaptosome (By similarity). Note=High levels in postsynaptic density of neurons in the forebrain. Also in presynaptic region of inhibitory synapses formed by cerebellar basket cells on axon hillocks of Purkinje cells.
TISSUE SPECIFICITY: Brain.
DOMAIN: The PDZ domain 3 mediates interaction with ADR1B.
DOMAIN: The L27 domain near the N-terminus of isoform 2 is required for HGS/HRS-dependent targeting to postsynaptic density.
PTM: Palmitoylation of isoform 1 is required for targeting to postsynaptic density (By similarity).
SIMILARITY: Belongs to the MAGUK family.
SIMILARITY: Contains 1 guanylate kinase-like domain.
SIMILARITY: Contains 3 PDZ (DHR) domains.
SIMILARITY: Contains 1 SH3 domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DLG4
Diseases sorted by gene-association score: diabetic encephalopathy (7), usher syndrome, type 1c (5), cerebral degeneration (5), huntington disease (3), autism spectrum disorder (2), schizophrenia (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 107.49 RPKM in Brain - Cortex
Total median expression: 1274.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -179.00480-0.373 Picture PostScript Text
3' UTR -1298.203521-0.369 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008144 - Guanylate_kin
IPR008145 - Guanylate_kin/L-typ_Ca_channel
IPR020590 - Guanylate_kinase_CS
IPR016313 - M-assoc_guanylate_kinase
IPR019590 - MAGUK_PEST_N
IPR001478 - PDZ
IPR019583 - PDZ_assoc
IPR001452 - SH3_domain

Pfam Domains:
PF00018 - SH3 domain
PF00595 - PDZ domain
PF00625 - Guanylate kinase
PF07653 - Variant SH3 domain
PF10600 - PDZ-associated domain of NMDA receptors
PF10608 - Polyubiquitination (PEST) N-terminal domain of MAGUK
PF17820 - PDZ domain

SCOP Domains:
50044 - SH3-domain
50156 - PDZ domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1KEF - NMR MuPIT 3I4W - X-ray MuPIT 3K82 - X-ray MuPIT 3ZRT - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P78352
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004385 guanylate kinase activity
GO:0005088 Ras guanyl-nucleotide exchange factor activity
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0015276 ligand-gated ion channel activity
GO:0019900 kinase binding
GO:0019903 protein phosphatase binding
GO:0030165 PDZ domain binding
GO:0031697 beta-1 adrenergic receptor binding
GO:0031748 D1 dopamine receptor binding
GO:0031812 P2Y1 nucleotide receptor binding
GO:0033130 acetylcholine receptor binding
GO:0035255 ionotropic glutamate receptor binding
GO:0044877 macromolecular complex binding
GO:0097109 neuroligin family protein binding
GO:0097110 scaffold protein binding

Biological Process:
GO:0000165 MAPK cascade
GO:0002091 negative regulation of receptor internalization
GO:0007165 signal transduction
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0007268 chemical synaptic transmission
GO:0007399 nervous system development
GO:0007612 learning
GO:0016188 synaptic vesicle maturation
GO:0034220 ion transmembrane transport
GO:0035176 social behavior
GO:0035418 protein localization to synapse
GO:0035641 locomotory exploration behavior
GO:0035865 cellular response to potassium ion
GO:0045184 establishment of protein localization
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity
GO:0046037 GMP metabolic process
GO:0046710 GDP metabolic process
GO:0048169 regulation of long-term neuronal synaptic plasticity
GO:0050806 positive regulation of synaptic transmission
GO:0050885 neuromuscular process controlling balance
GO:0060997 dendritic spine morphogenesis
GO:0061098 positive regulation of protein tyrosine kinase activity
GO:0065003 macromolecular complex assembly
GO:0071625 vocalization behavior
GO:0097113 AMPA glutamate receptor clustering
GO:0097120 receptor localization to synapse
GO:2000310 regulation of N-methyl-D-aspartate selective glutamate receptor activity
GO:2000463 positive regulation of excitatory postsynaptic potential
GO:2000821 regulation of grooming behavior

Cellular Component:
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0008021 synaptic vesicle
GO:0008328 ionotropic glutamate receptor complex
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0016323 basolateral plasma membrane
GO:0030054 cell junction
GO:0030424 axon
GO:0030425 dendrite
GO:0030666 endocytic vesicle membrane
GO:0030863 cortical cytoskeleton
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane
GO:0032281 AMPA glutamate receptor complex
GO:0032839 dendrite cytoplasm
GO:0042995 cell projection
GO:0043197 dendritic spine
GO:0044224 juxtaparanode region of axon
GO:0044300 cerebellar mossy fiber
GO:0044306 neuron projection terminus
GO:0044309 neuron spine
GO:0045202 synapse
GO:0045211 postsynaptic membrane
GO:0060076 excitatory synapse
GO:0071944 cell periphery
GO:0097060 synaptic membrane
GO:0098794 postsynapse
GO:0098839 postsynaptic density membrane
GO:0008076 voltage-gated potassium channel complex


-  Descriptions from all associated GenBank mRNAs
  JD254742 - Sequence 235766 from Patent EP1572962.
JD338133 - Sequence 319157 from Patent EP1572962.
JD139540 - Sequence 120564 from Patent EP1572962.
BC030203 - Homo sapiens discs, large homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:5200946), with apparent retained intron.
U83192 - Homo sapiens post-synaptic density protein 95 (PSD95) mRNA, complete cds.
JD564560 - Sequence 545584 from Patent EP1572962.
BC040533 - Homo sapiens discs, large homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:5261586), partial cds.
JD215876 - Sequence 196900 from Patent EP1572962.
AK299801 - Homo sapiens cDNA FLJ50646 complete cds, highly similar to Discs large homolog 4.
JD127037 - Sequence 108061 from Patent EP1572962.
JD157466 - Sequence 138490 from Patent EP1572962.
JD121188 - Sequence 102212 from Patent EP1572962.
BC136553 - Homo sapiens discs, large homolog 4 (Drosophila), mRNA (cDNA clone MGC:168166 IMAGE:9020543), complete cds.
BC144237 - Homo sapiens cDNA clone IMAGE:9052757, containing frame-shift errors.
JD518136 - Sequence 499160 from Patent EP1572962.
JD403830 - Sequence 384854 from Patent EP1572962.
AK316096 - Homo sapiens cDNA, FLJ78995 complete cds, highly similar to Discs large homolog 4.
AK308533 - Homo sapiens cDNA, FLJ98574.
AK297346 - Homo sapiens cDNA FLJ50577 complete cds, highly similar to Discs large homolog 4.
JD125377 - Sequence 106401 from Patent EP1572962.
JD415916 - Sequence 396940 from Patent EP1572962.
JD475961 - Sequence 456985 from Patent EP1572962.
JD278120 - Sequence 259144 from Patent EP1572962.
JD425689 - Sequence 406713 from Patent EP1572962.
JD325319 - Sequence 306343 from Patent EP1572962.
AK293835 - Homo sapiens cDNA FLJ50460 complete cds, highly similar to Discs large homolog 4.
AK296357 - Homo sapiens cDNA FLJ60612 complete cds, highly similar to Discs large homolog 4.
AB385021 - Synthetic construct DNA, clone: pF1KB5048, Homo sapiens DLG4 gene for discs large homolog 4, complete cds, without stop codon, in Flexi system.
U68138 - Human PSD-95 mRNA, partial cds.
AK307804 - Homo sapiens cDNA, FLJ97752.
AF028825 - Homo sapiens Tax interaction protein 15 mRNA, complete cds.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_nos1Pathway - Nitric Oxide Signaling Pathway
h_PDZsPathway - Synaptic Proteins at the Synaptic Junction

Reactome (by CSHL, EBI, and GO)

Protein P78352 (Reactome details) participates in the following event(s):

R-HSA-5671993 CIT-3 binds DLG4
R-HSA-8849878 PSD-95 binds NMDA receptor
R-HSA-416320 Trafficking of GluR1-containing AMPA receptors
R-HSA-5682794 LGI1 binds ADAM22 and ADAM23
R-HSA-8849906 SALM1 binds NMDA receptor
R-HSA-376134 NrCAM binds synapse-associated proteins
R-HSA-8849891 SALMs 1-3 bind to PSD-95 family members
R-HSA-6794336 NMDAR binds PSD-95 subfamily members
R-HSA-6794345 NLGNs binds PSD-95 subfamily members
R-HSA-432172 Activation of NMDA receptor
R-HSA-432162 Unblocking of NMDA receptor
R-HSA-6794349 NMDA receptor complex:DLG2,DLG3,DLG4 binds SPAR
R-HSA-6794356 BEGAIN binds DLG2,DLG3,DLG4
R-HSA-6794338 GKAPs bind PSD-95 members
R-HSA-442760 Activation of RasGRF
R-HSA-451283 kainate receptor binds glutamate
R-HSA-451311 Activation of Ca-permeable Kainate receptors
R-HSA-6794354 NMDA receptor complex:DLG2,DLG3,DLG4:SPAR binds PDLIM5
R-HSA-6794357 SHANK proteins bind GKAPs
R-HSA-432164 Ca2+ influx into the post-synaptic cell
R-HSA-445367 CaMKII enters cytoplasm
R-HSA-6794344 HOMER binds SHANK proteins
R-HSA-6797554 ABP1 binds SHANK proteins
R-HSA-442732 Ras activation
R-HSA-5672965 RAS GEFs promote RAS nucleotide exchange
R-HSA-5625900 RHO GTPases activate CIT
R-HSA-8849932 Synaptic adhesion-like molecules
R-HSA-399719 Trafficking of AMPA receptors
R-HSA-5682910 LGI-ADAM interactions
R-HSA-447038 NrCAM interactions
R-HSA-195258 RHO GTPase Effectors
R-HSA-6794362 Protein-protein interactions at synapses
R-HSA-6794361 Neurexins and neuroligins
R-HSA-399721 Glutamate binding, activation of AMPA receptors and synaptic plasticity
R-HSA-438066 Unblocking of NMDA receptor, glutamate binding and activation
R-HSA-1266738 Developmental Biology
R-HSA-373760 L1CAM interactions
R-HSA-194315 Signaling by Rho GTPases
R-HSA-112316 Neuronal System
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-442982 Ras activation upon Ca2+ influx through NMDA receptor
R-HSA-442755 Activation of NMDA receptor and postsynaptic events
R-HSA-451308 Activation of Ca-permeable Kainate Receptor
R-HSA-422475 Axon guidance
R-HSA-162582 Signal Transduction
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-442742 CREB phosphorylation through the activation of Ras
R-HSA-442729 CREB phosphorylation through the activation of CaMKII
R-HSA-451306 Ionotropic activity of kainate receptors
R-HSA-438064 Post NMDA receptor activation events
R-HSA-451326 Activation of kainate receptors upon glutamate binding
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-5683057 MAPK family signaling cascades

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z1S1, DLG4 , DLG4_HUMAN, ENST00000399506.1, ENST00000399506.2, ENST00000399506.3, ENST00000399506.4, ENST00000399506.5, ENST00000399506.6, ENST00000399506.7, ENST00000399506.8, G5E939, NM_001321075, P78352, PSD95, Q92941, Q9UKK8, uc319ajm.1, uc319ajm.2
UCSC ID: ENST00000399506.9_13
RefSeq Accession: NM_001321075.3
Protein: P78352 (aka DLG4_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene DLG4:
dlg4-synap (DLG4-Related Synaptopathy)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.