Human Gene DHCR7 (ENST00000355527.8_7) from GENCODE V47lift37
  Description: 7-dehydrocholesterol reductase, transcript variant 1 (from RefSeq NM_001360.3)
Gencode Transcript: ENST00000355527.8_7
Gencode Gene: ENSG00000172893.18_15
Transcript (Including UTRs)
   Position: hg19 chr11:71,145,457-71,159,439 Size: 13,983 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr11:71,146,421-71,155,998 Size: 9,578 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:71,145,457-71,159,439)mRNA (may differ from genome)Protein (475 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DHCR7_HUMAN
DESCRIPTION: RecName: Full=7-dehydrocholesterol reductase; Short=7-DHC reductase; EC=1.3.1.21; AltName: Full=Putative sterol reductase SR-2; AltName: Full=Sterol Delta(7)-reductase;
FUNCTION: Production of cholesterol by reduction of C7-C8 double bond of 7-dehydrocholesterol (7-DHC).
CATALYTIC ACTIVITY: Cholesterol + NADP(+) = cholesta-5,7-dien-3- beta-ol + NADPH.
PATHWAY: Steroid biosynthesis; cholesterol biosynthesis.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Most abundant in adrenal gland, liver, testis, and brain.
DISEASE: Defects in DHCR7 are the cause of Smith-Lemli-Opitz syndrome (SLOS) [MIM:270400]; also known as SLO syndrome or RSH syndrome. SLOS is an autosomal recessive frequent inborn disorder of sterol metabolism with characteristic congenital malformations and dysmorphias. All patients suffer from mental retardation. Children with SLOS have elevated serum 7-dehydrocholesterol (7- DHC) levels and low serum cholesterol levels. SLOS occurs in relatively high frequency: approximately 1 in 20,000 to 30,000 births in populations of northern and central European background. Historically, a clinical distinction often was made between classic ('type I') SLOS and the more severely affected ('type II') patients. There is, in reality, a clinical and biochemical continuum from mild to severe SLOS.
SIMILARITY: Belongs to the ERG4/ERG24 family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/DHCR7";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DHCR7
Diseases sorted by gene-association score: smith-lemli-opitz syndrome* (1741), holoprosencephaly (15), myotonic dystrophy 1 (9)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 34.54 RPKM in Liver
Total median expression: 504.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -91.10235-0.388 Picture PostScript Text
3' UTR -379.10964-0.393 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001171 - Ergosterol_biosynth_ERG4_ERG24
IPR018083 - Sterol_reductase_CS

Pfam Domains:
PF01222 - Ergosterol biosynthesis ERG4/ERG24 family

ModBase Predicted Comparative 3D Structure on Q9UBM7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0009918 sterol delta7 reductase activity
GO:0016491 oxidoreductase activity
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0047598 7-dehydrocholesterol reductase activity
GO:0050661 NADP binding

Biological Process:
GO:0001568 blood vessel development
GO:0006629 lipid metabolic process
GO:0006694 steroid biosynthetic process
GO:0006695 cholesterol biosynthetic process
GO:0008202 steroid metabolic process
GO:0008203 cholesterol metabolic process
GO:0009791 post-embryonic development
GO:0016126 sterol biosynthetic process
GO:0016132 brassinosteroid biosynthetic process
GO:0030154 cell differentiation
GO:0030324 lung development
GO:0033489 cholesterol biosynthetic process via desmosterol
GO:0033490 cholesterol biosynthetic process via lathosterol
GO:0035264 multicellular organism growth
GO:0042127 regulation of cell proliferation
GO:0045540 regulation of cholesterol biosynthetic process
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005640 nuclear outer membrane
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005829 cytosol
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030176 integral component of endoplasmic reticulum membrane
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  AK309625 - Homo sapiens cDNA, FLJ99666.
LF384319 - JP 2014500723-A/191822: Polycomb-Associated Non-Coding RNAs.
AF096305 - Homo sapiens sterol reductase SR-2 (DHCR7) mRNA, complete cds.
AF067127 - Homo sapiens 7-dehydrocholesterol reductase (DHCR7) mRNA, complete cds.
AF034544 - Homo sapiens delta7-sterol reductase mRNA, complete cds.
BC000054 - Homo sapiens 7-dehydrocholesterol reductase, mRNA (cDNA clone MGC:1760 IMAGE:3507516), complete cds.
JD261311 - Sequence 242335 from Patent EP1572962.
JD433272 - Sequence 414296 from Patent EP1572962.
JD340444 - Sequence 321468 from Patent EP1572962.
JD178528 - Sequence 159552 from Patent EP1572962.
LF370885 - JP 2014500723-A/178388: Polycomb-Associated Non-Coding RNAs.
AK289497 - Homo sapiens cDNA FLJ77740 complete cds, highly similar to Homo sapiens 7-dehydrocholesterol reductase, mRNA.
JD344354 - Sequence 325378 from Patent EP1572962.
JD534303 - Sequence 515327 from Patent EP1572962.
JD090179 - Sequence 71203 from Patent EP1572962.
JD397694 - Sequence 378718 from Patent EP1572962.
JD258680 - Sequence 239704 from Patent EP1572962.
JD465098 - Sequence 446122 from Patent EP1572962.
JD085737 - Sequence 66761 from Patent EP1572962.
AF062481 - Homo sapiens 7-dehydrocholesterol reductase (DHCR7) mRNA, partial cds.
JD473196 - Sequence 454220 from Patent EP1572962.
JD340446 - Sequence 321470 from Patent EP1572962.
JD495845 - Sequence 476869 from Patent EP1572962.
AK303881 - Homo sapiens cDNA FLJ51181 complete cds, highly similar to 7-dehydrocholesterol reductase (EC 1.3.1.21).
JD084837 - Sequence 65861 from Patent EP1572962.
JD140662 - Sequence 121686 from Patent EP1572962.
LF370884 - JP 2014500723-A/178387: Polycomb-Associated Non-Coding RNAs.
JD442299 - Sequence 423323 from Patent EP1572962.
JD253812 - Sequence 234836 from Patent EP1572962.
JD544384 - Sequence 525408 from Patent EP1572962.
JD485715 - Sequence 466739 from Patent EP1572962.
JD337040 - Sequence 318064 from Patent EP1572962.
AK312775 - Homo sapiens cDNA, FLJ93191, Homo sapiens 7-dehydrocholesterol reductase (DHCR7), mRNA.
DQ891827 - Synthetic construct clone IMAGE:100004457; FLH180333.01X; RZPDo839B01134D 7-dehydrocholesterol reductase (DHCR7) gene, encodes complete protein.
KJ896703 - Synthetic construct Homo sapiens clone ccsbBroadEn_06097 DHCR7 gene, encodes complete protein.
DQ895014 - Synthetic construct Homo sapiens clone IMAGE:100009474; FLH180329.01L; RZPDo839B01133D 7-dehydrocholesterol reductase (DHCR7) gene, encodes complete protein.
KJ534821 - Homo sapiens clone DHCR7_iso-A_adult-A01 7-dehydrocholesterol reductase isoform A (DHCR7) mRNA, partial cds, alternatively spliced.
KJ534963 - Homo sapiens clone DHCR7_iso-C_fetal-F09 7-dehydrocholesterol reductase isoform C (DHCR7) mRNA, partial cds, alternatively spliced.
KJ534997 - Homo sapiens clone DHCR7_iso-B_fetal-F12 7-dehydrocholesterol reductase isoform B (DHCR7) mRNA, complete cds, alternatively spliced.
KU178026 - Homo sapiens 7-dehydrocholesterol reductase isoform 1 (DHCR7) mRNA, partial cds.
KU178027 - Homo sapiens 7-dehydrocholesterol reductase isoform 2 (DHCR7) mRNA, complete cds, alternatively spliced.
KU178028 - Homo sapiens 7-dehydrocholesterol reductase isoform 3 (DHCR7) mRNA, complete cds, alternatively spliced.
KU178029 - Homo sapiens 7-dehydrocholesterol reductase isoform 4 (DHCR7) mRNA, partial cds, alternatively spliced.
LF370883 - JP 2014500723-A/178386: Polycomb-Associated Non-Coding RNAs.
JD473219 - Sequence 454243 from Patent EP1572962.
JD223582 - Sequence 204606 from Patent EP1572962.
JD206694 - Sequence 187718 from Patent EP1572962.
LF370879 - JP 2014500723-A/178382: Polycomb-Associated Non-Coding RNAs.
MA619896 - JP 2018138019-A/191822: Polycomb-Associated Non-Coding RNAs.
MA606462 - JP 2018138019-A/178388: Polycomb-Associated Non-Coding RNAs.
MA606461 - JP 2018138019-A/178387: Polycomb-Associated Non-Coding RNAs.
MA606460 - JP 2018138019-A/178386: Polycomb-Associated Non-Coding RNAs.
MA606456 - JP 2018138019-A/178382: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY66-3 - cholesterol biosynthesis II (via 24,25-dihydrolanosterol)
PWY66-341 - cholesterol biosynthesis I
PWY66-4 - cholesterol biosynthesis III (via desmosterol)
PWY66-5 - superpathway of cholesterol biosynthesis

Reactome (by CSHL, EBI, and GO)

Protein Q9UBM7 (Reactome details) participates in the following event(s):

R-HSA-196402 Cholesta-5,7,24-trien-3beta-ol is reduced to desmosterol
R-HSA-6807055 DHCR7 reduces 7-dehydroCHOL to CHOL
R-HSA-2426168 Activation of gene expression by SREBF (SREBP)
R-HSA-1655829 Regulation of cholesterol biosynthesis by SREBP (SREBF)
R-HSA-6807047 Cholesterol biosynthesis via desmosterol
R-HSA-6807062 Cholesterol biosynthesis via lathosterol
R-HSA-8957322 Metabolism of steroids
R-HSA-191273 Cholesterol biosynthesis
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B2R6Z2, D7SR, DHCR7_HUMAN, ENST00000355527.1, ENST00000355527.2, ENST00000355527.3, ENST00000355527.4, ENST00000355527.5, ENST00000355527.6, ENST00000355527.7, NM_001360, O60492, O60717, Q9UBM7, uc317zcz.1, uc317zcz.2
UCSC ID: ENST00000355527.8_7
RefSeq Accession: NM_001360.3
Protein: Q9UBM7 (aka DHCR7_HUMAN or DHC7_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene DHCR7:
slo (Smith-Lemli-Opitz Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.