Human Gene DCUN1D1 (ENST00000292782.9_9) from GENCODE V47lift37
  Description: defective in cullin neddylation 1 domain containing 1, transcript variant 1 (from RefSeq NM_020640.4)
Gencode Transcript: ENST00000292782.9_9
Gencode Gene: ENSG00000043093.15_15
Transcript (Including UTRs)
   Position: hg19 chr3:182,655,862-182,698,326 Size: 42,465 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr3:182,662,882-182,698,277 Size: 35,396 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:182,655,862-182,698,326)mRNA (may differ from genome)Protein (259 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DCNL1_HUMAN
DESCRIPTION: RecName: Full=DCN1-like protein 1; AltName: Full=DCUN1 domain-containing protein 1; AltName: Full=Defective in cullin neddylation protein 1-like protein 1; AltName: Full=Squamous cell carcinoma-related oncogene;
FUNCTION: Part of an E3 ubiquitin ligase complex for neddylation. Required for neddylation of cullin components of E3 cullin-RING ubiquitin ligase complexes by enhancing the rate of cullins neddylation. Functions to recruit the NEDD8-charged E2 enzyme to the cullin component. Involved in the release of inhibitory effets of CAND1 on cullin-RING ligase E3 complex assembly and activity. Acts also as an oncogene facilitating malignant transformation and carcinogenic progression (By similarity).
SUBUNIT: Part of an E3 complex for neddylation composed of cullins, RBX1, UBE2M and CAND1. Interacts (via the C-terminus 50 AA) with CUL1, CUL2, CUL3, CUL4 and CUL5. Binds neddylated CUL1. Interacts (via the C-terminus 50 AA) directly with RBX1. Interacts preferentially with UBE2M-NEDD8 thioester (via N-terminus 1-26 AA) than with free UBE2M. Interacts with CAND1 when in complex with CUL1-RBX1.
TISSUE SPECIFICITY: Expressed in pancreas, kidney, placenta, brain and heart. Weakly or not expressed in liver, skeletal muscle and lung. Strongly overexpressed in thyroid tumors, bronchioloalveolar carcinomas, and malignant tissues of squamous cell carcinoma of the oral tongue. Not overexpressed in aggressive adrenocortical carcinomas.
SIMILARITY: Contains 1 DCUN1 domain.
SIMILARITY: Contains 1 UBA-like domain.
SEQUENCE CAUTION: Sequence=BAB15235.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DCUN1D1
Diseases sorted by gene-association score: squamous cell carcinoma of the oral tongue (18), squamous cell carcinoma (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.62 RPKM in Testis
Total median expression: 206.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -10.6049-0.216 Picture PostScript Text
3' UTR -1628.907020-0.232 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR014764 - DCN-prot
IPR005176 - PONY_dom
IPR009060 - UBA-like

Pfam Domains:
PF03556 - Cullin binding
PF14555 - UBA-like domain

SCOP Domains:
46458 - Globin-like
46934 - UBA-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3TDU - X-ray MuPIT 3TDZ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q96GG9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0031624 ubiquitin conjugating enzyme binding
GO:0032182 ubiquitin-like protein binding
GO:0097602 cullin family protein binding

Biological Process:
GO:0043687 post-translational protein modification
GO:0045116 protein neddylation
GO:0051443 positive regulation of ubiquitin-protein transferase activity
GO:2000436 positive regulation of protein neddylation

Cellular Component:
GO:0000151 ubiquitin ligase complex
GO:0005634 nucleus
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK095773 - Homo sapiens cDNA FLJ38454 fis, clone FEBRA2019690.
JD094763 - Sequence 75787 from Patent EP1572962.
AF292100 - Homo sapiens RP42 protein mRNA, complete cds.
LP895476 - Sequence 340 from Patent EP3253886.
JD429148 - Sequence 410172 from Patent EP1572962.
JD291389 - Sequence 272413 from Patent EP1572962.
JD382431 - Sequence 363455 from Patent EP1572962.
JD283814 - Sequence 264838 from Patent EP1572962.
AK025764 - Homo sapiens cDNA: FLJ22111 fis, clone HEP18290.
JD498933 - Sequence 479957 from Patent EP1572962.
JD306201 - Sequence 287225 from Patent EP1572962.
JD109841 - Sequence 90865 from Patent EP1572962.
JD052184 - Sequence 33208 from Patent EP1572962.
JD305549 - Sequence 286573 from Patent EP1572962.
JD300232 - Sequence 281256 from Patent EP1572962.
JD084329 - Sequence 65353 from Patent EP1572962.
BC013163 - Homo sapiens DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:3924462), partial cds.
AK056335 - Homo sapiens cDNA FLJ31773 fis, clone NT2RI2008045, highly similar to DCN1-like protein 1.
BC009478 - Homo sapiens DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae), mRNA (cDNA clone MGC:15099 IMAGE:3939758), complete cds.
JD313795 - Sequence 294819 from Patent EP1572962.
AK297328 - Homo sapiens cDNA FLJ57531 complete cds, highly similar to DCN1-like protein 1.
JD496503 - Sequence 477527 from Patent EP1572962.
JD059418 - Sequence 40442 from Patent EP1572962.
JD131395 - Sequence 112419 from Patent EP1572962.
JD096634 - Sequence 77658 from Patent EP1572962.
AF456425 - Homo sapiens squamous cell carcinoma-related oncoprotein (SCCRO) mRNA, complete cds.
AF456426 - Homo sapiens squamous cell carcinoma-related oncoprotein (SCCRO) mRNA, complete cds.
JD362913 - Sequence 343937 from Patent EP1572962.
JD315888 - Sequence 296912 from Patent EP1572962.
AK314480 - Homo sapiens cDNA, FLJ95287, highly similar to Homo sapiens RP42 homolog (RP42), mRNA.
KJ902639 - Synthetic construct Homo sapiens clone ccsbBroadEn_12033 DCUN1D1 gene, encodes complete protein.
HQ448015 - Synthetic construct Homo sapiens clone IMAGE:100071388; CCSB006659_03 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) (DCUN1D1) gene, encodes complete protein.
KJ898969 - Synthetic construct Homo sapiens clone ccsbBroadEn_08363 DCUN1D1 gene, encodes complete protein.
AB527854 - Synthetic construct DNA, clone: pF1KB6315, Homo sapiens DCUN1D1 gene for DCN1, defective in cullin neddylation 1, domain containing 1, without stop codon, in Flexi system.
CU679373 - Synthetic construct Homo sapiens gateway clone IMAGE:100020645 5' read DCUN1D1 mRNA.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7899 - protein NEDDylation

Reactome (by CSHL, EBI, and GO)

Protein Q96GG9 (Reactome details) participates in the following event(s):

R-HSA-8952039 NEDD8:AcM-UBE2F binds CRL5 E3 ubiquitin ligase complex
R-HSA-8952620 NEDD8:AcM-UBE2M binds CRL1 E3 ubiquitin ligase complex
R-HSA-8952639 NEDD8:AcM-UBE2M binds CRL4 E3 ubiquitin ligase complex
R-HSA-8952044 AcM-UBE2F transfers NEDD8 to CRL5 E3 ubiquitin ligase complex
R-HSA-8952618 AcM-UBE2M transfers NEDD8 to CRL1 E3 ubiquitin ligase complex
R-HSA-8956099 VHL:EloB,C:NEDD8-CUL2:RBX1 complex binds UBXN7
R-HSA-8956103 VHL:EloB,C:NEDD8-CUL2:RBX1 complex binds hydroxyprolyl-HIF-alpha
R-HSA-8952638 AcM-UBE2M transfers NEDD8 to CRL4 E3 ubiquitin ligase complex
R-HSA-8956045 COP9 signalosome deneddylates nuclear CRL4 E3 ubiquitin ligase complex
R-HSA-8956040 COP9 signalosome deneddylates cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-8956106 VHL:EloB,C:NEDD8-CUL2:RBX1 complex ubiquitinylates HIF-alpha
R-HSA-8951664 Neddylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B2RB37, DCN1 , DCNL1_HUMAN, DCUN1D1 , DCUN1L1, ENST00000292782.1, ENST00000292782.2, ENST00000292782.3, ENST00000292782.4, ENST00000292782.5, ENST00000292782.6, ENST00000292782.7, ENST00000292782.8, NM_020640, Q7L3G9, Q8TEX7, Q96GG9, Q9H6M1, Q9HCT3, RP42, SCCRO, uc317lcj.1, uc317lcj.2
UCSC ID: ENST00000292782.9_9
RefSeq Accession: NM_020640.4
Protein: Q96GG9 (aka DCNL1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.