Human Gene DBP (ENST00000222122.10_7) from GENCODE V47lift37
  Description: D-box binding PAR bZIP transcription factor (from RefSeq NM_001352.5)
Gencode Transcript: ENST00000222122.10_7
Gencode Gene: ENSG00000105516.11_9
Transcript (Including UTRs)
   Position: hg19 chr19:49,133,287-49,140,636 Size: 7,350 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr19:49,134,094-49,140,251 Size: 6,158 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:49,133,287-49,140,636)mRNA (may differ from genome)Protein (325 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DBP_HUMAN
DESCRIPTION: RecName: Full=D site-binding protein; AltName: Full=Albumin D box-binding protein; AltName: Full=Albumin D-element-binding protein; AltName: Full=Tax-responsive enhancer element-binding protein 302; Short=TaxREB302;
FUNCTION: This transcriptional activator recognizes and binds to the sequence 5'-RTTAYGTAAY-3' found in the promoter of genes such as albumin, CYP2A4 and CYP2A5. It is not essential for circadian rhythm generation, but modulates important clock output genes. May be a direct target for regulation by the circadian pacemaker component clock. May affect circadian period and sleep regulation.
SUBUNIT: Binds DNA as a homodimer or a heterodimer. Can form a heterodimer with TEF.
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Ubiquitously expressed. Expressed in the suprachiasmatic nuclei (SCN) and in most peripheral tissues, with a strong circadian rhythmicity.
SIMILARITY: Belongs to the bZIP family. PAR subfamily.
SIMILARITY: Contains 1 bZIP (basic-leucine zipper) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.74 RPKM in Brain - Cerebellum
Total median expression: 356.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -142.10385-0.369 Picture PostScript Text
3' UTR -333.10807-0.413 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004827 - bZIP

Pfam Domains:
PF07716 - Basic region leucine zipper

SCOP Domains:
57959 - Leucine zipper domain

ModBase Predicted Comparative 3D Structure on Q10586
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGD  WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding

Biological Process:
GO:0001889 liver development
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0007275 multicellular organism development
GO:0007623 circadian rhythm
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048511 rhythmic process

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  LF207678 - JP 2014500723-A/15181: Polycomb-Associated Non-Coding RNAs.
D28468 - Homo sapiens TAXREB302 mRNA for tax-responsive element-binding protein, partial cds.
LF207677 - JP 2014500723-A/15180: Polycomb-Associated Non-Coding RNAs.
U06936 - Human albumin D-box binding protein (DBP) mRNA, complete cds.
BC011965 - Homo sapiens D site of albumin promoter (albumin D-box) binding protein, mRNA (cDNA clone MGC:9164 IMAGE:3857434), complete cds.
U79283 - Human albumin D-box binding protein mRNA, complete cds.
AB208807 - Homo sapiens mRNA for D site of albumin promoter (albumin D-box) binding protein variant protein.
LF367901 - JP 2014500723-A/175404: Polycomb-Associated Non-Coding RNAs.
JD420830 - Sequence 401854 from Patent EP1572962.
JD157230 - Sequence 138254 from Patent EP1572962.
KJ896690 - Synthetic construct Homo sapiens clone ccsbBroadEn_06084 DBP gene, encodes complete protein.
BT006836 - Homo sapiens D site of albumin promoter (albumin D-box) binding protein mRNA, complete cds.
LF367900 - JP 2014500723-A/175403: Polycomb-Associated Non-Coding RNAs.
AK310025 - Homo sapiens cDNA, FLJ17067.
LF367897 - JP 2014500723-A/175400: Polycomb-Associated Non-Coding RNAs.
LF367896 - JP 2014500723-A/175399: Polycomb-Associated Non-Coding RNAs.
LF367893 - JP 2014500723-A/175396: Polycomb-Associated Non-Coding RNAs.
JD126188 - Sequence 107212 from Patent EP1572962.
JD193064 - Sequence 174088 from Patent EP1572962.
JD402015 - Sequence 383039 from Patent EP1572962.
JD201560 - Sequence 182584 from Patent EP1572962.
JD369750 - Sequence 350774 from Patent EP1572962.
MA603478 - JP 2018138019-A/175404: Polycomb-Associated Non-Coding RNAs.
MA603477 - JP 2018138019-A/175403: Polycomb-Associated Non-Coding RNAs.
MA603474 - JP 2018138019-A/175400: Polycomb-Associated Non-Coding RNAs.
MA603473 - JP 2018138019-A/175399: Polycomb-Associated Non-Coding RNAs.
MA603470 - JP 2018138019-A/175396: Polycomb-Associated Non-Coding RNAs.
MA443255 - JP 2018138019-A/15181: Polycomb-Associated Non-Coding RNAs.
MA443254 - JP 2018138019-A/15180: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_pparaPathway - Mechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha)

Reactome (by CSHL, EBI, and GO)

Protein Q10586 (Reactome details) participates in the following event(s):

R-HSA-1368108 BMAL1:CLOCK,NPAS2 activates circadian gene expression
R-HSA-400253 Circadian Clock

-  Other Names for This Gene
  Alternate Gene Symbols: A2I2P4, DBP_HUMAN, ENST00000222122.1, ENST00000222122.2, ENST00000222122.3, ENST00000222122.4, ENST00000222122.5, ENST00000222122.6, ENST00000222122.7, ENST00000222122.8, ENST00000222122.9, NM_001352, Q10586, uc317ddm.1, uc317ddm.2
UCSC ID: ENST00000222122.10_7
RefSeq Accession: NM_001352.5
Protein: Q10586 (aka DBP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.