Human Gene CSNK1A1L (ENST00000379800.4_6) from GENCODE V47lift37
  Description: casein kinase 1 alpha 1 like (from RefSeq NM_145203.6)
Gencode Transcript: ENST00000379800.4_6
Gencode Gene: ENSG00000180138.7_8
Transcript (Including UTRs)
   Position: hg19 chr13:37,677,396-37,679,801 Size: 2,406 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr13:37,678,380-37,679,393 Size: 1,014 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:37,677,396-37,679,801)mRNA (may differ from genome)Protein (337 aa)
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-  Comments and Description Text from UniProtKB
  ID: KC1AL_HUMAN
DESCRIPTION: RecName: Full=Casein kinase I isoform alpha-like; Short=CKI-alpha-like; EC=2.7.11.1; AltName: Full=CK1;
FUNCTION: Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. It can phosphorylate a large number of proteins. Participates in Wnt signaling (By similarity).
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. CK1 Ser/Thr protein kinase family. Casein kinase I subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.47 RPKM in Testis
Total median expression: 4.64 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -188.50408-0.462 Picture PostScript Text
3' UTR -222.80984-0.226 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF03109 - ABC1 atypical kinase-like domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF17667 - Fungal protein kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q8N752
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0006468 protein phosphorylation
GO:0006909 phagocytosis
GO:0008360 regulation of cell shape
GO:0016055 Wnt signaling pathway
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC028723 - Homo sapiens casein kinase 1, alpha 1-like, mRNA (cDNA clone MGC:33182 IMAGE:5266487), complete cds.
LP895889 - Sequence 753 from Patent EP3253886.
JD436109 - Sequence 417133 from Patent EP1572962.
JD379091 - Sequence 360115 from Patent EP1572962.
JD426112 - Sequence 407136 from Patent EP1572962.
JD290058 - Sequence 271082 from Patent EP1572962.
JD562354 - Sequence 543378 from Patent EP1572962.
JD138510 - Sequence 119534 from Patent EP1572962.
JD176960 - Sequence 157984 from Patent EP1572962.
JD048675 - Sequence 29699 from Patent EP1572962.
JD091860 - Sequence 72884 from Patent EP1572962.
JD088276 - Sequence 69300 from Patent EP1572962.
DQ891231 - Synthetic construct clone IMAGE:100003861; FLH170367.01X; RZPDo839E0898D casein kinase 1, alpha 1-like (CSNK1A1L) gene, encodes complete protein.
KJ900077 - Synthetic construct Homo sapiens clone ccsbBroadEn_09471 CSNK1A1L gene, encodes complete protein.
KJ905602 - Synthetic construct Homo sapiens clone ccsbBroadEn_15232 CSNK1A1L gene, encodes complete protein.
CU688552 - Synthetic construct Homo sapiens gateway clone IMAGE:100018994 5' read CSNK1A1L mRNA.
DQ894415 - Synthetic construct Homo sapiens clone IMAGE:100008875; FLH170363.01L; RZPDo839E0897D casein kinase 1, alpha 1-like (CSNK1A1L) gene, encodes complete protein.
AB528436 - Synthetic construct DNA, clone: pF1KE0763, Homo sapiens CSNK1A1L gene for casein kinase 1, alpha 1-like, without stop codon, in Flexi system.
JD147532 - Sequence 128556 from Patent EP1572962.
JD293795 - Sequence 274819 from Patent EP1572962.
JD218201 - Sequence 199225 from Patent EP1572962.
JD130594 - Sequence 111618 from Patent EP1572962.
JD125211 - Sequence 106235 from Patent EP1572962.
JD093821 - Sequence 74845 from Patent EP1572962.
JD107853 - Sequence 88877 from Patent EP1572962.
JD203058 - Sequence 184082 from Patent EP1572962.
JD055595 - Sequence 36619 from Patent EP1572962.
JD370713 - Sequence 351737 from Patent EP1572962.
JD210890 - Sequence 191914 from Patent EP1572962.
JD264452 - Sequence 245476 from Patent EP1572962.
JD305484 - Sequence 286508 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000379800.1, ENST00000379800.2, ENST00000379800.3, KC1AL_HUMAN, NM_145203, Q5T2N2, Q8N752, uc318per.1, uc318per.2
UCSC ID: ENST00000379800.4_6
RefSeq Accession: NM_145203.6
Protein: Q8N752 (aka KC1AL_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.