Human Gene CSE1L (ENST00000262982.3_4) from GENCODE V47lift37
  Description: chromosome segregation 1 like, transcript variant 3 (from RefSeq NR_045796.2)
Gencode Transcript: ENST00000262982.3_4
Gencode Gene: ENSG00000124207.17_7
Transcript (Including UTRs)
   Position: hg19 chr20:47,662,849-47,713,486 Size: 50,638 Total Exon Count: 25 Strand: +
Coding Region
   Position: hg19 chr20:47,675,001-47,712,975 Size: 37,975 Coding Exon Count: 24 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:47,662,849-47,713,486)mRNA (may differ from genome)Protein (971 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: XPO2_HUMAN
DESCRIPTION: RecName: Full=Exportin-2; Short=Exp2; AltName: Full=Cellular apoptosis susceptibility protein; AltName: Full=Chromosome segregation 1-like protein; AltName: Full=Importin-alpha re-exporter;
FUNCTION: Export receptor for importin-alpha. Mediates importin- alpha re-export from the nucleus to the cytoplasm after import substrates (cargos) have been released into the nucleoplasm. In the nucleus binds cooperatively to importin-alpha and to the GTPase Ran in its active GTP-bound form. Docking of this trimeric complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the importin-alpha from the export receptor. CSE1L/XPO2 then return to the nuclear compartment and mediate another round of transport. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.
SUBUNIT: Found in a complex with CSE1L/XPO2, Ran and KPNA2. Binds with high affinity to importin-alpha only in the presence of RanGTP. The complex is dissociated by the combined action of RanBP1 and RanGAP1.
INTERACTION: P04637:TP53; NbExp=5; IntAct=EBI-286709, EBI-366083;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Shuttles between the nucleus and the cytoplasm.
TISSUE SPECIFICITY: Highly expressed in proliferating cells.
SIMILARITY: Belongs to the XPO2/CSE1 family.
SIMILARITY: Contains 1 importin N-terminal domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CSE1L
Diseases sorted by gene-association score: colorectal cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 61.52 RPKM in Testis
Total median expression: 867.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -43.90123-0.357 Picture PostScript Text
3' UTR -113.70511-0.223 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR005043 - CAS_CSE1_C
IPR013713 - Exportin/Importin_Cse1-like
IPR001494 - Importin-beta_N

Pfam Domains:
PF03378 - CAS/CSE protein, C-terminus
PF03810 - Importin-beta N-terminal domain
PF08506 - Cse1

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain

ModBase Predicted Comparative 3D Structure on P55060
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005049 nuclear export signal receptor activity
GO:0005515 protein binding
GO:0008536 Ran GTPase binding

Biological Process:
GO:0006606 protein import into nucleus
GO:0006886 intracellular protein transport
GO:0006915 apoptotic process
GO:0008283 cell proliferation
GO:0015031 protein transport
GO:0051168 nuclear export

Cellular Component:
GO:0005634 nucleus
GO:0005635 nuclear envelope
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC108309 - Homo sapiens CSE1 chromosome segregation 1-like (yeast), mRNA (cDNA clone MGC:117283 IMAGE:4540265), complete cds.
GQ891441 - Homo sapiens clone HEL-S-162 epididymis secretory sperm binding protein mRNA, complete cds.
LF383773 - JP 2014500723-A/191276: Polycomb-Associated Non-Coding RNAs.
U33286 - Human chromosome segregation gene homolog CAS mRNA, complete cds.
AF053641 - Homo sapiens brain cellular apoptosis susceptibility protein (CSE1) mRNA, complete cds.
AK312306 - Homo sapiens cDNA, FLJ92611, highly similar to Homo sapiens CSE1 chromosome segregation 1-like (yeast) (CSE1L), mRNA.
AK307965 - Homo sapiens cDNA, FLJ97913.
AK297314 - Homo sapiens cDNA FLJ59343 complete cds, highly similar to Exportin-2.
AK297270 - Homo sapiens cDNA FLJ54022 complete cds, highly similar to Exportin-2.
AK298477 - Homo sapiens cDNA FLJ59371 complete cds, highly similar to Exportin-2.
AK300589 - Homo sapiens cDNA FLJ53202 complete cds, highly similar to Exportin-2.
BC109313 - Homo sapiens CSE1 chromosome segregation 1-like (yeast), mRNA (cDNA clone MGC:130036 IMAGE:40036129), complete cds.
BC109314 - Homo sapiens CSE1 chromosome segregation 1-like (yeast), mRNA (cDNA clone MGC:130037 IMAGE:40036130), complete cds.
AF053640 - Homo sapiens trachea cellular apoptosis susceptibility protein (CSE1) mRNA, complete cds.
AB462992 - Synthetic construct DNA, clone: pF1KB4677, Homo sapiens CSE1L gene for CSE1 chromosome segregation 1-like, without stop codon, in Flexi system.
EU832780 - Synthetic construct Homo sapiens clone HAIB:100067809; DKFZo008B1133 CSE1 chromosome segregation 1-like (yeast) protein (CSE1L) gene, encodes complete protein.
GQ129319 - Synthetic construct Homo sapiens clone HAIB:100068469; DKFZo004B1134 CSE1 chromosome segregation 1-like (yeast) protein (CSE1L) gene, partial cds.
EF426455 - Homo sapiens cellular apoptosis susceptibility protein variant 2 (CSE1L-2) mRNA, complete cds.
AK299549 - Homo sapiens cDNA FLJ56236 complete cds, highly similar to Exportin-2.
AK225610 - Homo sapiens mRNA for CSE1 chromosome segregation 1-like protein isoform a variant, clone: REC00188.
AK098618 - Homo sapiens cDNA FLJ25752 fis, clone TST06191, highly similar to CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN.
AF053642 - Homo sapiens liver cellular apoptosis susceptibilty protein (CSE1) mRNA, partial cds.
MA619350 - JP 2018138019-A/191276: Polycomb-Associated Non-Coding RNAs.
LF350653 - JP 2014500723-A/158156: Polycomb-Associated Non-Coding RNAs.
LF350654 - JP 2014500723-A/158157: Polycomb-Associated Non-Coding RNAs.
LF350655 - JP 2014500723-A/158158: Polycomb-Associated Non-Coding RNAs.
LF350656 - JP 2014500723-A/158159: Polycomb-Associated Non-Coding RNAs.
LF350659 - JP 2014500723-A/158162: Polycomb-Associated Non-Coding RNAs.
LF350660 - JP 2014500723-A/158163: Polycomb-Associated Non-Coding RNAs.
LF350661 - JP 2014500723-A/158164: Polycomb-Associated Non-Coding RNAs.
LF350662 - JP 2014500723-A/158165: Polycomb-Associated Non-Coding RNAs.
MA586230 - JP 2018138019-A/158156: Polycomb-Associated Non-Coding RNAs.
MA586231 - JP 2018138019-A/158157: Polycomb-Associated Non-Coding RNAs.
MA586232 - JP 2018138019-A/158158: Polycomb-Associated Non-Coding RNAs.
MA586233 - JP 2018138019-A/158159: Polycomb-Associated Non-Coding RNAs.
MA586236 - JP 2018138019-A/158162: Polycomb-Associated Non-Coding RNAs.
MA586237 - JP 2018138019-A/158163: Polycomb-Associated Non-Coding RNAs.
MA586238 - JP 2018138019-A/158164: Polycomb-Associated Non-Coding RNAs.
MA586239 - JP 2018138019-A/158165: Polycomb-Associated Non-Coding RNAs.
LF350663 - JP 2014500723-A/158166: Polycomb-Associated Non-Coding RNAs.
LF350664 - JP 2014500723-A/158167: Polycomb-Associated Non-Coding RNAs.
LF350666 - JP 2014500723-A/158169: Polycomb-Associated Non-Coding RNAs.
JD384926 - Sequence 365950 from Patent EP1572962.
JD240233 - Sequence 221257 from Patent EP1572962.
JD074772 - Sequence 55796 from Patent EP1572962.
JD304764 - Sequence 285788 from Patent EP1572962.
JD562763 - Sequence 543787 from Patent EP1572962.
JD467572 - Sequence 448596 from Patent EP1572962.
JD286319 - Sequence 267343 from Patent EP1572962.
MA586240 - JP 2018138019-A/158166: Polycomb-Associated Non-Coding RNAs.
MA586241 - JP 2018138019-A/158167: Polycomb-Associated Non-Coding RNAs.
MA586243 - JP 2018138019-A/158169: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A3RLL6, B2R5T4, CAS , E1P5Y0, ENST00000262982.1, ENST00000262982.2, F8W904, NR_045796, O75432, P55060, Q32M40, Q9H5B7, Q9NTS0, Q9UP98, Q9UP99, Q9UPA0, uc317hfk.1, uc317hfk.2, XPO2, XPO2_HUMAN
UCSC ID: ENST00000262982.3_4
RefSeq Accession: NM_001316.4
Protein: P55060 (aka XPO2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.