Human Gene CREBZF (ENST00000527447.2_7) from GENCODE V47lift37
  Description: CREB/ATF bZIP transcription factor, transcript variant 18 (from RefSeq NR_165411.1)
Gencode Transcript: ENST00000527447.2_7
Gencode Gene: ENSG00000137504.16_14
Transcript (Including UTRs)
   Position: hg19 chr11:85,369,034-85,376,173 Size: 7,140 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr11:85,374,855-85,375,919 Size: 1,065 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:85,369,034-85,376,173)mRNA (may differ from genome)Protein (354 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZHANG_HUMAN
DESCRIPTION: RecName: Full=CREB/ATF bZIP transcription factor; AltName: Full=Host cell factor-binding transcription factor Zhangfei; Short=HCF-binding transcription factor Zhangfei;
FUNCTION: Strongly activates transcription when bound to HCFC1. Suppresses the expression of HSV proteins in cells infected with the virus in a HCFC1-dependent manner. Also suppresses the HCFC1- dependent transcriptional activation by CREB3 and reduces the amount of CREB3 in the cell. Able to down-regulate expression of some cellular genes in CREBZF-expressing cells.
SUBUNIT: Interacts with HCFC1; the interaction inhibits CREB3 transcriptional activity.
INTERACTION: P62509:Esrrg (xeno); NbExp=3; IntAct=EBI-632965, EBI-5274019; P51610:HCFC1; NbExp=8; IntAct=EBI-632965, EBI-396176; Q96EB6:SIRT1; NbExp=3; IntAct=EBI-632965, EBI-1802965;
SUBCELLULAR LOCATION: Nucleus. Note=Colocalizes in promyelocytic leukemia protein nuclear bodies (PML-NB) with CREB3 and HCFC1.
TISSUE SPECIFICITY: In adults, expressed most abundantly in heart, liver and skeletal muscle, moderately abundant in kidney and pancreas, and barely detectable in lung. In fetal tissues, expressed most abundantly in kidney and very low amounts in heart, lung and liver.
MISCELLANEOUS: Named 'Zhangfei' after a legendary Chinese warrior who was contemporary with Luman in around 220 AD.
SIMILARITY: Belongs to the bZIP family. ATF subfamily.
SIMILARITY: Contains 1 bZIP (basic-leucine zipper) domain.
SEQUENCE CAUTION: Sequence=AAD28325.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAD28325.1; Type=Frameshift; Positions=5, 49; Sequence=AAZ42189.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAG36256.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAG36256.1; Type=Frameshift; Positions=59;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 43.34 RPKM in Ovary
Total median expression: 1124.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -135.30254-0.533 Picture PostScript Text
3' UTR -1361.405821-0.234 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004827 - bZIP

Pfam Domains:
PF00170 - bZIP transcription factor

SCOP Domains:
57959 - Leucine zipper domain

ModBase Predicted Comparative 3D Structure on Q9NS37
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0042802 identical protein binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0009615 response to virus
GO:0045814 negative regulation of gene expression, epigenetic
GO:0045892 negative regulation of transcription, DNA-templated
GO:0051090 regulation of sequence-specific DNA binding transcription factor activity

Cellular Component:
GO:0005634 nucleus
GO:0005739 mitochondrion


-  Descriptions from all associated GenBank mRNAs
  AL110236 - Homo sapiens mRNA; cDNA DKFZp566P1124 (from clone DKFZp566P1124).
DQ128105 - Homo sapiens HCF-binding transcription factor Zhangfei mRNA, complete cds.
BC060807 - Homo sapiens CREB/ATF bZIP transcription factor, mRNA (cDNA clone MGC:71635 IMAGE:30345789), complete cds.
AF039942 - Homo sapiens HCF-binding transcription factor Zhangfei (ZF) mRNA, complete cds.
JD503160 - Sequence 484184 from Patent EP1572962.
JD426096 - Sequence 407120 from Patent EP1572962.
JD130129 - Sequence 111153 from Patent EP1572962.
JD058945 - Sequence 39969 from Patent EP1572962.
JD280419 - Sequence 261443 from Patent EP1572962.
JD089837 - Sequence 70861 from Patent EP1572962.
JD112606 - Sequence 93630 from Patent EP1572962.
JD250208 - Sequence 231232 from Patent EP1572962.
JD047350 - Sequence 28374 from Patent EP1572962.
JD088270 - Sequence 69294 from Patent EP1572962.
JD236741 - Sequence 217765 from Patent EP1572962.
JD243005 - Sequence 224029 from Patent EP1572962.
JD486622 - Sequence 467646 from Patent EP1572962.
JD071641 - Sequence 52665 from Patent EP1572962.
JD439180 - Sequence 420204 from Patent EP1572962.
JD057796 - Sequence 38820 from Patent EP1572962.
JD173596 - Sequence 154620 from Patent EP1572962.
JD428523 - Sequence 409547 from Patent EP1572962.
JD164137 - Sequence 145161 from Patent EP1572962.
JD402502 - Sequence 383526 from Patent EP1572962.
BC093796 - Homo sapiens CREB/ATF bZIP transcription factor, mRNA (cDNA clone IMAGE:7939641), partial cds.
BC093798 - Homo sapiens CREB/ATF bZIP transcription factor, mRNA (cDNA clone IMAGE:7939643), partial cds.
JD164799 - Sequence 145823 from Patent EP1572962.
AK313471 - Homo sapiens cDNA, FLJ94018, Homo sapiens HCF-binding transcription factor Zhangfei (ZF), mRNA.
EU446879 - Synthetic construct Homo sapiens clone IMAGE:100069982; IMAGE:100012088; FLH257145.01L CREB/ATF bZIP transcription factor (CREBZF) gene, encodes complete protein.
AB385575 - Synthetic construct DNA, clone: pF1KB9433, Homo sapiens CREBZF gene for CREB/ATF bZIP transcription factor, complete cds, without stop codon, in Flexi system.
JD476409 - Sequence 457433 from Patent EP1572962.
JD173282 - Sequence 154306 from Patent EP1572962.
JD439749 - Sequence 420773 from Patent EP1572962.
JD105181 - Sequence 86205 from Patent EP1572962.
JD484690 - Sequence 465714 from Patent EP1572962.
JD459141 - Sequence 440165 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2R8Q9, ENST00000527447.1, NR_165411, Q0P5U9, Q52LT3, Q9NS37, uc324did.1, uc324did.2, ZF, ZHANG_HUMAN
UCSC ID: ENST00000527447.2_7
RefSeq Accession: NM_001039618.4
Protein: Q9NS37 (aka ZHANG_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.