Human Gene CNTROB (ENST00000563694.6_8) from GENCODE V47lift37
  Description: centrobin, centriole duplication and spindle assembly protein, transcript variant 1 (from RefSeq NM_053051.5)
Gencode Transcript: ENST00000563694.6_8
Gencode Gene: ENSG00000170037.14_16
Transcript (Including UTRs)
   Position: hg19 chr17:7,835,524-7,853,238 Size: 17,715 Total Exon Count: 19 Strand: +
Coding Region
   Position: hg19 chr17:7,836,398-7,852,828 Size: 16,431 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:7,835,524-7,853,238)mRNA (may differ from genome)Protein (903 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CNTRB_HUMAN
DESCRIPTION: RecName: Full=Centrobin; AltName: Full=Centrosomal BRCA2-interacting protein; AltName: Full=LYST-interacting protein 8;
FUNCTION: Required for centriole duplication. Inhibition of centriole duplication leading to defects in cytokinesis.
SUBUNIT: Interacts with LYST.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome, centriole. Note=Centriole-associated, asymmetrically localizes to the daughter centriole.
TISSUE SPECIFICITY: Widely expressed (at protein level). Highly expressed in testis. Also expressed in spleen, thymus, prostate, small intestine, colon and peripheral blood leukocytes.
DEVELOPMENTAL STAGE: Preferentially incorporated into the newly assembled daughter centriole during centriole assembly at the late G1 or early S phase. Remains in the daughter centrioles throughout the cell cycle. At the next cycle of centriole duplication, its amount on the original daughter centriole eventually decreases.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SEQUENCE CAUTION: Sequence=AAG49447.1; Type=Erroneous translation; Note=Wrong choice of frame; Sequence=AAG49447.1; Type=Frameshift; Positions=609; Sequence=BAC11241.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CNTROB
Diseases sorted by gene-association score: squamous cell papilloma (17), salivary gland disease (5), sialadenitis (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 38.28 RPKM in Testis
Total median expression: 470.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -345.90874-0.396 Picture PostScript Text
3' UTR -90.60410-0.221 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8N137
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019904 protein domain specific binding

Biological Process:
GO:0007049 cell cycle
GO:0007099 centriole replication
GO:0051299 centrosome separation
GO:0051301 cell division
GO:1902017 regulation of cilium assembly
GO:1902410 mitotic cytokinetic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005814 centriole
GO:0005829 cytosol
GO:0005856 cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  LF384754 - JP 2014500723-A/192257: Polycomb-Associated Non-Coding RNAs.
AY160226 - Homo sapiens centrobin alpha mRNA, complete cds.
AY160227 - Homo sapiens centrobin beta mRNA, complete cds.
AK293076 - Homo sapiens cDNA FLJ76980 complete cds, highly similar to Homo sapiens LYST-interacting protein LIP8 (LIP8), mRNA.
AF331638 - Homo sapiens PP1221 mRNA, complete cds.
JD058079 - Sequence 39103 from Patent EP1572962.
BC021134 - Homo sapiens centrobin, centrosomal BRCA2 interacting protein, mRNA (cDNA clone MGC:32051 IMAGE:4859539), complete cds.
AL833907 - Homo sapiens mRNA; cDNA DKFZp434I1519 (from clone DKFZp434I1519).
JD092765 - Sequence 73789 from Patent EP1572962.
JD204124 - Sequence 185148 from Patent EP1572962.
JD408205 - Sequence 389229 from Patent EP1572962.
DQ577294 - Homo sapiens piRNA piR-45406, complete sequence.
JD292999 - Sequence 274023 from Patent EP1572962.
JD345186 - Sequence 326210 from Patent EP1572962.
JD146422 - Sequence 127446 from Patent EP1572962.
LF326317 - JP 2014500723-A/133820: Polycomb-Associated Non-Coding RNAs.
JD243384 - Sequence 224408 from Patent EP1572962.
JD295904 - Sequence 276928 from Patent EP1572962.
JD207247 - Sequence 188271 from Patent EP1572962.
JD070650 - Sequence 51674 from Patent EP1572962.
JD403313 - Sequence 384337 from Patent EP1572962.
JD541190 - Sequence 522214 from Patent EP1572962.
JD167049 - Sequence 148073 from Patent EP1572962.
JD327656 - Sequence 308680 from Patent EP1572962.
JD153932 - Sequence 134956 from Patent EP1572962.
CU676846 - Synthetic construct Homo sapiens gateway clone IMAGE:100021991 5' read CNTROB mRNA.
AB527810 - Synthetic construct DNA, clone: pF1KB8491, Homo sapiens CNTROB gene for centrobin, centrosomal BRCA2 interacting protein, without stop codon, in Flexi system.
DQ892038 - Synthetic construct clone IMAGE:100004668; FLH182567.01X; RZPDo839H07138D centrobin, centrosomal BRCA2 interacting protein (CNTROB) gene, encodes complete protein.
DQ895229 - Synthetic construct Homo sapiens clone IMAGE:100009689; FLH182563.01L; RZPDo839H07137D centrobin, centrosomal BRCA2 interacting protein (CNTROB) gene, encodes complete protein.
BC014055 - Homo sapiens centrobin, centrosomal BRCA2 interacting protein, mRNA (cDNA clone IMAGE:3628973), partial cds.
LF326316 - JP 2014500723-A/133819: Polycomb-Associated Non-Coding RNAs.
AL137669 - Homo sapiens mRNA; cDNA DKFZp434M0435 (from clone DKFZp434M0435).
LF326315 - JP 2014500723-A/133818: Polycomb-Associated Non-Coding RNAs.
AK303093 - Homo sapiens cDNA FLJ58385 complete cds, moderately similar to Centrobin.
AK074847 - Homo sapiens cDNA FLJ90366 fis, clone NT2RP2004141.
AF141344 - Homo sapiens LYST-interacting protein LIP8 mRNA, partial cds.
LF326311 - JP 2014500723-A/133814: Polycomb-Associated Non-Coding RNAs.
LF326309 - JP 2014500723-A/133812: Polycomb-Associated Non-Coding RNAs.
JD055635 - Sequence 36659 from Patent EP1572962.
LF326308 - JP 2014500723-A/133811: Polycomb-Associated Non-Coding RNAs.
LF326307 - JP 2014500723-A/133810: Polycomb-Associated Non-Coding RNAs.
MA620331 - JP 2018138019-A/192257: Polycomb-Associated Non-Coding RNAs.
MA561894 - JP 2018138019-A/133820: Polycomb-Associated Non-Coding RNAs.
MA561893 - JP 2018138019-A/133819: Polycomb-Associated Non-Coding RNAs.
MA561892 - JP 2018138019-A/133818: Polycomb-Associated Non-Coding RNAs.
MA561888 - JP 2018138019-A/133814: Polycomb-Associated Non-Coding RNAs.
MA561886 - JP 2018138019-A/133812: Polycomb-Associated Non-Coding RNAs.
MA561885 - JP 2018138019-A/133811: Polycomb-Associated Non-Coding RNAs.
MA561884 - JP 2018138019-A/133810: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NHQ1, CNTRB_HUMAN, ENST00000563694.1, ENST00000563694.2, ENST00000563694.3, ENST00000563694.4, ENST00000563694.5, LIP8, NM_053051, PP1221, Q331K3, Q69YV7, Q8N137, Q8NCB8, Q8WXV3, Q96CQ7, Q9C060, uc325sgz.1, uc325sgz.2
UCSC ID: ENST00000563694.6_8
RefSeq Accession: NM_053051.5
Protein: Q8N137 (aka CNTRB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.