Human Gene CKAP5 (ENST00000529230.6_7) from GENCODE V47lift37
  Description: cytoskeleton associated protein 5, transcript variant 1 (from RefSeq NM_001008938.4)
Gencode Transcript: ENST00000529230.6_7
Gencode Gene: ENSG00000175216.15_19
Transcript (Including UTRs)
   Position: hg19 chr11:46,764,598-46,867,831 Size: 103,234 Total Exon Count: 44 Strand: -
Coding Region
   Position: hg19 chr11:46,765,573-46,842,782 Size: 77,210 Coding Exon Count: 43 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:46,764,598-46,867,831)mRNA (may differ from genome)Protein (2032 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CKAP5_HUMAN
DESCRIPTION: RecName: Full=Cytoskeleton-associated protein 5; AltName: Full=Colonic and hepatic tumor overexpressed gene protein; Short=Ch-TOG;
FUNCTION: Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles.
SUBUNIT: Interacts with TACC1. Interacts with SLAIN2.
INTERACTION: P16333:NCK1; NbExp=3; IntAct=EBI-310585, EBI-389883; O75410:TACC1; NbExp=3; IntAct=EBI-310585, EBI-624237; O75410-1:TACC1; NbExp=3; IntAct=EBI-310585, EBI-624252; O75410-6:TACC1; NbExp=2; IntAct=EBI-310585, EBI-624278;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome. Cytoplasm, cytoskeleton, spindle pole. Note=Detected on centrosomes during interphase. Detected on spindle poles and microtubules during mitosis.
TISSUE SPECIFICITY: Overexpressed in hepatomas and colonic tumors. Also expressed in skeletal muscle, brain, heart, placenta, lung, liver, kidney and pancreas.
SIMILARITY: Belongs to the TOG/XMAP215 family.
SIMILARITY: Contains 10 HEAT repeats.
SEQUENCE CAUTION: Sequence=AAH17856.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH70136.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAI11044.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAI20871.1; Type=Frameshift; Positions=18; Sequence=BAA07892.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 35.44 RPKM in Testis
Total median expression: 675.17 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -28.4098-0.290 Picture PostScript Text
3' UTR -286.10975-0.293 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR024395 - CLASP_N_dom
IPR000357 - HEAT
IPR021133 - HEAT_type_2

Pfam Domains:
PF02985 - HEAT repeat
PF12348 - CLASP N terminal
PF12765 - HEAT repeat associated with sister chromatid cohesion

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain
48464 - ENTH/VHS domain

ModBase Predicted Comparative 3D Structure on Q14008
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0045296 cadherin binding
GO:0051010 microtubule plus-end binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0007019 microtubule depolymerization
GO:0007049 cell cycle
GO:0007051 spindle organization
GO:0007098 centrosome cycle
GO:0010389 regulation of G2/M transition of mitotic cell cycle
GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity
GO:0046785 microtubule polymerization
GO:0050658 RNA transport
GO:0051298 centrosome duplication
GO:0051301 cell division
GO:0097711 ciliary basal body docking

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0000776 kinetochore
GO:0000777 condensed chromosome kinetochore
GO:0000922 spindle pole
GO:0005694 chromosome
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0032991 macromolecular complex
GO:0000930 gamma-tubulin complex
GO:0015630 microtubule cytoskeleton
GO:0035371 microtubule plus-end


-  Descriptions from all associated GenBank mRNAs
  LF383706 - JP 2014500723-A/191209: Polycomb-Associated Non-Coding RNAs.
D43948 - Homo sapiens KIAA0097 mRNA for KIAA0097 protein.
X92474 - H.sapiens mRNA for ch-TOG protein.
BC120869 - Homo sapiens cytoskeleton associated protein 5, mRNA (cDNA clone MGC:134926 IMAGE:40072423), complete cds.
BC120870 - Homo sapiens cytoskeleton associated protein 5, mRNA (cDNA clone MGC:134927 IMAGE:40072425), complete cds.
MA619283 - JP 2018138019-A/191209: Polycomb-Associated Non-Coding RNAs.
LF348010 - JP 2014500723-A/155513: Polycomb-Associated Non-Coding RNAs.
JD392162 - Sequence 373186 from Patent EP1572962.
LF348009 - JP 2014500723-A/155512: Polycomb-Associated Non-Coding RNAs.
JD141969 - Sequence 122993 from Patent EP1572962.
BC035554 - Homo sapiens cytoskeleton associated protein 5, mRNA (cDNA clone IMAGE:5167317), complete cds.
KJ902022 - Synthetic construct Homo sapiens clone ccsbBroadEn_11416 CKAP5 gene, encodes complete protein.
LF348008 - JP 2014500723-A/155511: Polycomb-Associated Non-Coding RNAs.
LF348007 - JP 2014500723-A/155510: Polycomb-Associated Non-Coding RNAs.
LF348006 - JP 2014500723-A/155509: Polycomb-Associated Non-Coding RNAs.
LF348005 - JP 2014500723-A/155508: Polycomb-Associated Non-Coding RNAs.
LF348003 - JP 2014500723-A/155506: Polycomb-Associated Non-Coding RNAs.
CU690102 - Synthetic construct Homo sapiens gateway clone IMAGE:100020493 5' read CKAP5 mRNA.
HZ459915 - WO 2015186770-A/5: RNAi PHARMACEUTICAL COMPOSITION FOR SUPPRESSING EXPRESSION OF CKAP5 GENE.
LY494280 - KR 1020170012366-A/5: CKAP5-GENE-SILENCING RNAI PHARMACEUTICAL COMPOSITION.
LF348002 - JP 2014500723-A/155505: Polycomb-Associated Non-Coding RNAs.
JD333473 - Sequence 314497 from Patent EP1572962.
LF347999 - JP 2014500723-A/155502: Polycomb-Associated Non-Coding RNAs.
MA583587 - JP 2018138019-A/155513: Polycomb-Associated Non-Coding RNAs.
MA583586 - JP 2018138019-A/155512: Polycomb-Associated Non-Coding RNAs.
MA583585 - JP 2018138019-A/155511: Polycomb-Associated Non-Coding RNAs.
MA583584 - JP 2018138019-A/155510: Polycomb-Associated Non-Coding RNAs.
MA583583 - JP 2018138019-A/155509: Polycomb-Associated Non-Coding RNAs.
MA583582 - JP 2018138019-A/155508: Polycomb-Associated Non-Coding RNAs.
MA583580 - JP 2018138019-A/155506: Polycomb-Associated Non-Coding RNAs.
MA583579 - JP 2018138019-A/155505: Polycomb-Associated Non-Coding RNAs.
MA583576 - JP 2018138019-A/155502: Polycomb-Associated Non-Coding RNAs.
LF347998 - JP 2014500723-A/155501: Polycomb-Associated Non-Coding RNAs.
LF347997 - JP 2014500723-A/155500: Polycomb-Associated Non-Coding RNAs.
LF347995 - JP 2014500723-A/155498: Polycomb-Associated Non-Coding RNAs.
HZ459914 - WO 2015186770-A/4: RNAi PHARMACEUTICAL COMPOSITION FOR SUPPRESSING EXPRESSION OF CKAP5 GENE.
LY494279 - KR 1020170012366-A/4: CKAP5-GENE-SILENCING RNAI PHARMACEUTICAL COMPOSITION.
BC111043 - Homo sapiens cytoskeleton associated protein 5, mRNA (cDNA clone IMAGE:5520886), partial cds.
LF347994 - JP 2014500723-A/155497: Polycomb-Associated Non-Coding RNAs.
LF347991 - JP 2014500723-A/155494: Polycomb-Associated Non-Coding RNAs.
AK092678 - Homo sapiens cDNA FLJ35359 fis, clone SALGL1000107, highly similar to CH-TOG PROTEIN.
AX747668 - Sequence 1193 from Patent EP1308459.
BC070136 - Homo sapiens cytoskeleton associated protein 5, mRNA (cDNA clone IMAGE:6463629), partial cds.
LF347990 - JP 2014500723-A/155493: Polycomb-Associated Non-Coding RNAs.
HZ459912 - WO 2015186770-A/2: RNAi PHARMACEUTICAL COMPOSITION FOR SUPPRESSING EXPRESSION OF CKAP5 GENE.
LY494277 - KR 1020170012366-A/2: CKAP5-GENE-SILENCING RNAI PHARMACEUTICAL COMPOSITION.
LF347989 - JP 2014500723-A/155492: Polycomb-Associated Non-Coding RNAs.
BC017856 - Homo sapiens cytoskeleton associated protein 5, mRNA (cDNA clone IMAGE:4699215), partial cds.
LF347988 - JP 2014500723-A/155491: Polycomb-Associated Non-Coding RNAs.
LF347986 - JP 2014500723-A/155489: Polycomb-Associated Non-Coding RNAs.
LF347985 - JP 2014500723-A/155488: Polycomb-Associated Non-Coding RNAs.
MA583575 - JP 2018138019-A/155501: Polycomb-Associated Non-Coding RNAs.
MA583574 - JP 2018138019-A/155500: Polycomb-Associated Non-Coding RNAs.
MA583572 - JP 2018138019-A/155498: Polycomb-Associated Non-Coding RNAs.
MA583571 - JP 2018138019-A/155497: Polycomb-Associated Non-Coding RNAs.
MA583568 - JP 2018138019-A/155494: Polycomb-Associated Non-Coding RNAs.
MA583567 - JP 2018138019-A/155493: Polycomb-Associated Non-Coding RNAs.
MA583566 - JP 2018138019-A/155492: Polycomb-Associated Non-Coding RNAs.
MA583565 - JP 2018138019-A/155491: Polycomb-Associated Non-Coding RNAs.
MA583563 - JP 2018138019-A/155489: Polycomb-Associated Non-Coding RNAs.
MA583562 - JP 2018138019-A/155488: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q14008 (Reactome details) participates in the following event(s):

R-HSA-141409 Mad1 binds kinetochore
R-HSA-375302 Kinetochore capture of astral microtubules
R-HSA-5666129 CDC42:GTP recruits DIAPH2-2 to kinetochores
R-HSA-5666169 Kinetochore capture of astral microtubules is positively regulated by CDC42:GTP:p-S196-DIAPH2-2
R-HSA-380272 Plk1-mediated phosphorylation of Nlp
R-HSA-380283 Recruitment of additional gamma tubulin/ gamma TuRC to the centrosome
R-HSA-380294 Loss of C-Nap-1 from centrosomes
R-HSA-380311 Recruitment of Plk1 to centrosomes
R-HSA-380455 Recruitment of CDK11p58 to the centrosomes
R-HSA-380303 Dissociation of Phospho-Nlp from the centrosome
R-HSA-5626220 C2CD3 binds the mother centriole
R-HSA-141431 MAD2 associates with the Mad1 kinetochore complex
R-HSA-141439 Release of activated MAD2 from kinetochores
R-HSA-2467811 Separation of sister chromatids
R-HSA-2467809 ESPL1 (Separase) cleaves centromeric cohesin
R-HSA-5666160 AURKB phosphorylates DIAPH2-2 at kinetochores
R-HSA-380508 Translocation of NuMA to the centrosomes
R-HSA-2574845 AJUBA binds centrosome-associated AURKA
R-HSA-8853405 TPX2 binds AURKA at centrosomes
R-HSA-3000319 BORA binds PLK1 and AURKA
R-HSA-2574840 AJUBA facilitates AURKA autophosphorylation
R-HSA-3000310 AURKA phosphorylates PLK1
R-HSA-5626223 C2CD3 and OFD1 recruit 5 distal appendage proteins to the centriole
R-HSA-5626681 Recruitment of transition zone proteins
R-HSA-5626227 CP110 and CEP97 dissociate from the centriole
R-HSA-141422 MAD2 converted to an inhibitory state via interaction with Mad1
R-HSA-1638821 PP2A-B56 dephosphorylates centromeric cohesin
R-HSA-1638803 Phosphorylation of cohesin by PLK1 at centromeres
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-380316 Association of NuMA with microtubules
R-HSA-8853419 TPX2 promotes AURKA autophosphorylation
R-HSA-5626228 The distal appendage proteins recruit TTBK2
R-HSA-5638009 CEP164 recruits RAB3IP-carrying Golgi-derived vesicles to the basal body
R-HSA-5626699 MARK4 binds ODF2 in the centriole
R-HSA-5617816 RAB3IP stimulates nucleotide exchange on RAB8A
R-HSA-141444 Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
R-HSA-68877 Mitotic Prometaphase
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-380259 Loss of Nlp from mitotic centrosomes
R-HSA-380270 Recruitment of mitotic centrosome proteins and complexes
R-HSA-380284 Loss of proteins required for interphase microtubule organization from the centrosome
R-HSA-5620912 Anchoring of the basal body to the plasma membrane
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-141424 Amplification of signal from the kinetochores
R-HSA-68886 M Phase
R-HSA-195258 RHO GTPase Effectors
R-HSA-380320 Recruitment of NuMA to mitotic centrosomes
R-HSA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-HSA-8854518 AURKA Activation by TPX2
R-HSA-380287 Centrosome maturation
R-HSA-5617833 Cilium Assembly
R-HSA-68882 Mitotic Anaphase
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-194315 Signaling by Rho GTPases
R-HSA-69275 G2/M Transition
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-1640170 Cell Cycle
R-HSA-162582 Signal Transduction
R-HSA-453274 Mitotic G2-G2/M phases

-  Other Names for This Gene
  Alternate Gene Symbols: CKAP5_HUMAN, ENST00000529230.1, ENST00000529230.2, ENST00000529230.3, ENST00000529230.4, ENST00000529230.5, KIAA0097, NM_001008938, Q05D70, Q0VAX7, Q0VAX8, Q14008, Q14668, Q2TA89, Q6NSH4, uc324ftp.1, uc324ftp.2
UCSC ID: ENST00000529230.6_7
RefSeq Accession: NM_001008938.4
Protein: Q14008 (aka CKAP5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.