Human Gene CISH (ENST00000348721.4_6) from GENCODE V47lift37
  Description: cytokine inducible SH2 containing protein, transcript variant 2 (from RefSeq NM_145071.4)
Gencode Transcript: ENST00000348721.4_6
Gencode Gene: ENSG00000114737.16_7
Transcript (Including UTRs)
   Position: hg19 chr3:50,643,920-50,649,205 Size: 5,286 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr3:50,645,038-50,649,081 Size: 4,044 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:50,643,920-50,649,205)mRNA (may differ from genome)Protein (258 aa)
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CISH_HUMAN
DESCRIPTION: RecName: Full=Cytokine-inducible SH2-containing protein; Short=CIS; AltName: Full=CIS-1; AltName: Full=Protein G18; AltName: Full=Suppressor of cytokine signaling; Short=SOCS;
FUNCTION: SOCS family proteins form part of a classical negative feedback system that regulates cytokine signal transduction. CIS is involved in the negative regulation of cytokines that signal through the JAK-STAT5 pathway such as erythropoietin, prolactin and interleukin 3 (IL3) receptor. Inhibits STAT5 trans-activation by suppressing its tyrosine phosphorylation. May be a substrate- recognition component of a SCF-like ECS (Elongin BC-CUL2/5-SOCS- box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Stably associated with the tyrosine-phosphorylated IL3 receptor beta chain and tyrosine-phosphorylated EPO receptor (EPOR).
TISSUE SPECIFICITY: Expressed in various epithelial tissues. Abundantly expressed in liver and kidney, and to a lesser extent in lung. The tissue distribution of isoforms 1 and 1B is distinct.
INDUCTION: By a subset of cytokines including EPO/erythropoietin.
PTM: Association with EPOR may target the protein for proteolysis by the ubiquitin-dependent proteasome pathway. CIS is mainly monubiquitinated (37 kDa form) but may also exist in a polyubiquitinated form (45 kDa).
POLYMORPHISM: Note=CISH polymorphisms are involved in susceptibilty to malaria [MIM:611162].
POLYMORPHISM: Note=Genetic variations in CISH are involved in susceptibilty to tuberculosis [MIM:607948].
POLYMORPHISM: Note=Genetic variations in CISH are associated with susceptibility to bacterial invasion of the blood and define the bacteremia susceptibility locus 2 (BACTS2) [MIM:614383].
SIMILARITY: Contains 1 SH2 domain.
SIMILARITY: Contains 1 SOCS box domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CISH
Diseases sorted by gene-association score: bacteremia* (593), malaria* (176), breast secretory carcinoma (6), central nervous system disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.10 RPKM in Thyroid
Total median expression: 340.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.20124-0.389 Picture PostScript Text
3' UTR -420.001118-0.376 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000980 - SH2
IPR001496 - SOCS_C

Pfam Domains:
PF00017 - SH2 domain
PF07525 - SOCS box

SCOP Domains:
158235 - SOCS box-like
55550 - SH2 domain

ModBase Predicted Comparative 3D Structure on Q9NSE2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function
GO:0004860 protein kinase inhibitor activity
GO:0005515 protein binding

Biological Process:
GO:0001558 regulation of cell growth
GO:0006469 negative regulation of protein kinase activity
GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway
GO:0009968 negative regulation of signal transduction
GO:0016567 protein ubiquitination
GO:0019221 cytokine-mediated signaling pathway
GO:0035556 intracellular signal transduction
GO:0038111 interleukin-7-mediated signaling pathway
GO:0040008 regulation of growth
GO:0043687 post-translational protein modification
GO:0046426 negative regulation of JAK-STAT cascade
GO:0046627 negative regulation of insulin receptor signaling pathway

Cellular Component:
GO:0005575 cellular_component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  BC064354 - Homo sapiens cytokine inducible SH2-containing protein, mRNA (cDNA clone MGC:75431 IMAGE:4804249), complete cds.
BC031590 - Homo sapiens cytokine inducible SH2-containing protein, mRNA (cDNA clone MGC:34375 IMAGE:5182644), complete cds.
AF035947 - Homo sapiens cytokine-inducible inhibitor of signalling type 1b mRNA, complete cds.
AF132297 - Homo sapiens cytokine-inducible SH2-containing protein (G18) mRNA, complete cds.
JD399499 - Sequence 380523 from Patent EP1572962.
LF208611 - JP 2014500723-A/16114: Polycomb-Associated Non-Coding RNAs.
JD367724 - Sequence 348748 from Patent EP1572962.
JD445685 - Sequence 426709 from Patent EP1572962.
JD533484 - Sequence 514508 from Patent EP1572962.
D83532 - Homo sapiens mRNA for cytokine-inducible SH2-containing protein, complete cds.
JD353515 - Sequence 334539 from Patent EP1572962.
JD136959 - Sequence 117983 from Patent EP1572962.
JD069620 - Sequence 50644 from Patent EP1572962.
JD055369 - Sequence 36393 from Patent EP1572962.
JD308413 - Sequence 289437 from Patent EP1572962.
JD401389 - Sequence 382413 from Patent EP1572962.
JD393274 - Sequence 374298 from Patent EP1572962.
JD382420 - Sequence 363444 from Patent EP1572962.
JD298634 - Sequence 279658 from Patent EP1572962.
JD158575 - Sequence 139599 from Patent EP1572962.
JD474678 - Sequence 455702 from Patent EP1572962.
JD219708 - Sequence 200732 from Patent EP1572962.
JD192927 - Sequence 173951 from Patent EP1572962.
JD393172 - Sequence 374196 from Patent EP1572962.
JD368773 - Sequence 349797 from Patent EP1572962.
JD188134 - Sequence 169158 from Patent EP1572962.
JD107223 - Sequence 88247 from Patent EP1572962.
JD111869 - Sequence 92893 from Patent EP1572962.
JD369833 - Sequence 350857 from Patent EP1572962.
JD334660 - Sequence 315684 from Patent EP1572962.
JD372497 - Sequence 353521 from Patent EP1572962.
JD159215 - Sequence 140239 from Patent EP1572962.
JD240102 - Sequence 221126 from Patent EP1572962.
JD519425 - Sequence 500449 from Patent EP1572962.
JD190932 - Sequence 171956 from Patent EP1572962.
JD160334 - Sequence 141358 from Patent EP1572962.
AK313850 - Homo sapiens cDNA, FLJ94478, Homo sapiens cytokine inducible SH2-containing protein (CISH),transcript variant 2, mRNA.
CU689192 - Synthetic construct Homo sapiens gateway clone IMAGE:100016909 5' read CISH mRNA.
KJ896613 - Synthetic construct Homo sapiens clone ccsbBroadEn_06007 CISH gene, encodes complete protein.
AB528903 - Synthetic construct DNA, clone: pF1KE0671, Homo sapiens CISH gene for cytokine inducible SH2-containing protein, without stop codon, in Flexi system.
LF378430 - JP 2014500723-A/185933: Polycomb-Associated Non-Coding RNAs.
JD128197 - Sequence 109221 from Patent EP1572962.
JD417139 - Sequence 398163 from Patent EP1572962.
JD554998 - Sequence 536022 from Patent EP1572962.
MA444188 - JP 2018138019-A/16114: Polycomb-Associated Non-Coding RNAs.
MA614007 - JP 2018138019-A/185933: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NSE2 (Reactome details) participates in the following event(s):

R-HSA-1168809 SOCS binding to GHR
R-NUL-1169195 SOCS binding to Ghr
R-HSA-1168813 SOCS binding to JAK2
R-HSA-8952039 NEDD8:AcM-UBE2F binds CRL5 E3 ubiquitin ligase complex
R-HSA-8955241 CAND1 binds cytosolic CRL E3 ubiquitin ligases
R-HSA-8952044 AcM-UBE2F transfers NEDD8 to CRL5 E3 ubiquitin ligase complex
R-HSA-8955289 COMMDs displace CAND1 from cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-8956040 COP9 signalosome deneddylates cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-982772 Growth hormone receptor signaling
R-HSA-1266695 Interleukin-7 signaling
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-449147 Signaling by Interleukins
R-HSA-168256 Immune System
R-HSA-8951664 Neddylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B2R9N1, CISH_HUMAN, ENST00000348721.1, ENST00000348721.2, ENST00000348721.3, G18, G5E9R1, NM_145071, Q9NS38, Q9NSE2, Q9Y5R1, uc317xsj.1, uc317xsj.2
UCSC ID: ENST00000348721.4_6
RefSeq Accession: NM_145071.4
Protein: Q9NSE2 (aka CISH_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.