Human Gene CCR4 (ENST00000330953.6_4) from GENCODE V47lift37
  Description: C-C motif chemokine receptor 4 (from RefSeq NM_005508.5)
Gencode Transcript: ENST00000330953.6_4
Gencode Gene: ENSG00000183813.8_8
Transcript (Including UTRs)
   Position: hg19 chr3:32,993,136-32,997,841 Size: 4,706 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr3:32,994,915-32,995,997 Size: 1,083 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:32,993,136-32,997,841)mRNA (may differ from genome)Protein (360 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CCR4_HUMAN
DESCRIPTION: RecName: Full=C-C chemokine receptor type 4; Short=C-C CKR-4; Short=CC-CKR-4; Short=CCR-4; Short=CCR4; AltName: Full=K5-5; AltName: CD_antigen=CD194;
FUNCTION: High affinity receptor for the C-C type chemokines CCL17/TARC and CCL22/MDC. The activity of this receptor is mediated by G(i) proteins which activate a phosphatidylinositol- calcium second messenger system. Can function as a chemoattractant homing receptor on circulating memory lymphocytes and as a coreceptor for some primary HIV-2 isolates. In the CNS, could mediate hippocampal-neuron survival.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Predominantly expressed in the thymus, in peripheral blood leukocytes, including T-cells, mostly CD4+ cells, and basophils, and in platelets; at lower levels, in the spleen and in monocytes. Detected also in macrophages, IL-2-activated natural killer cells and skin-homing memory T-cells, mostly the ones expressing the cutaneous lymphocyte antigen (CLA). Expressed in brain microvascular and coronary artery endothelial cells.
PTM: In natural killer cells, CCL22 binding induces phosphorylation on yet undefined Ser/Thr residues, most probably by beta-adrenergic receptor kinases 1 and 2.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
WEB RESOURCE: Name=Wikipedia; Note=CC chemokine receptors entry; URL="http://en.wikipedia.org/wiki/CC_chemokine_receptors";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CCR4
Diseases sorted by gene-association score: cutaneous t cell lymphoma (5), mycosis fungoides (4), sezary's disease (3), alk-negative anaplastic large cell lymphoma (2), pustulosis palmaris et plantaris (2), pulmonary fibrosis, idiopathic (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.37 RPKM in Spleen
Total median expression: 7.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -27.5098-0.281 Picture PostScript Text
3' UTR -778.401844-0.422 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR002239 - Chemokine_CCR4
IPR000355 - Chemokine_rcpt
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)
PF10320 - Serpentine type 7TM GPCR chemoreceptor Srsx

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on P51679
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0004950 chemokine receptor activity
GO:0016493 C-C chemokine receptor activity

Biological Process:
GO:0001764 neuron migration
GO:0002507 tolerance induction
GO:0006935 chemotaxis
GO:0006954 inflammatory response
GO:0006955 immune response
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0009314 response to radiation
GO:0009617 response to bacterium
GO:0046677 response to antibiotic
GO:0048872 homeostasis of number of cells
GO:0050927 positive regulation of positive chemotaxis
GO:0070098 chemokine-mediated signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009897 external side of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043025 neuronal cell body


-  Descriptions from all associated GenBank mRNAs
  BC071751 - Homo sapiens chemokine (C-C motif) receptor 4, mRNA (cDNA clone MGC:88293 IMAGE:30415446), complete cds.
AK292674 - Homo sapiens cDNA FLJ75821 complete cds, highly similar to Homo sapiens chemokine (C-C motif) receptor 4 (CCR4), mRNA.
X85740 - H.sapiens mRNA for C-C chemokine receptor-4.
BC069139 - Homo sapiens chemokine (C-C motif) receptor 4, mRNA (cDNA clone MGC:95423 IMAGE:7216998), complete cds.
BC074935 - Homo sapiens chemokine (C-C motif) receptor 4, mRNA (cDNA clone MGC:103884 IMAGE:30915268), complete cds.
CU687156 - Synthetic construct Homo sapiens gateway clone IMAGE:100023136 5' read CCR4 mRNA.
AB464482 - Synthetic construct DNA, clone: pF1KB8809, Homo sapiens CCR4 gene for chemokine (C-C motif) receptor 4, without stop codon, in Flexi system.
JD160419 - Sequence 141443 from Patent EP1572962.
JD418373 - Sequence 399397 from Patent EP1572962.
JD386559 - Sequence 367583 from Patent EP1572962.
JD199535 - Sequence 180559 from Patent EP1572962.
JD213853 - Sequence 194877 from Patent EP1572962.
JD062006 - Sequence 43030 from Patent EP1572962.
JD435573 - Sequence 416597 from Patent EP1572962.
JD147603 - Sequence 128627 from Patent EP1572962.
JD515179 - Sequence 496203 from Patent EP1572962.
JD193972 - Sequence 174996 from Patent EP1572962.
JD286018 - Sequence 267042 from Patent EP1572962.
JD494558 - Sequence 475582 from Patent EP1572962.
JD272025 - Sequence 253049 from Patent EP1572962.
JD140609 - Sequence 121633 from Patent EP1572962.
JD198376 - Sequence 179400 from Patent EP1572962.
JD198375 - Sequence 179399 from Patent EP1572962.
JD153089 - Sequence 134113 from Patent EP1572962.
JD153091 - Sequence 134115 from Patent EP1572962.
JD153090 - Sequence 134114 from Patent EP1572962.
JD527555 - Sequence 508579 from Patent EP1572962.
JD160945 - Sequence 141969 from Patent EP1572962.
JD546527 - Sequence 527551 from Patent EP1572962.
JD546528 - Sequence 527552 from Patent EP1572962.
JD492104 - Sequence 473128 from Patent EP1572962.
JD365500 - Sequence 346524 from Patent EP1572962.
JD365501 - Sequence 346525 from Patent EP1572962.
JD409341 - Sequence 390365 from Patent EP1572962.
JD390150 - Sequence 371174 from Patent EP1572962.
JD396204 - Sequence 377228 from Patent EP1572962.
JD489590 - Sequence 470614 from Patent EP1572962.
JD536582 - Sequence 517606 from Patent EP1572962.
JD356414 - Sequence 337438 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_nktPathway - Selective expression of chemokine receptors during T-cell polarization

Reactome (by CSHL, EBI, and GO)

Protein P51679 (Reactome details) participates in the following event(s):

R-HSA-373061 Receptors CCR3, 4 and 5 bind CCL5 ligand
R-HSA-749454 The Ligand:GPCR:Gi complex dissociates
R-HSA-749456 Liganded Gi-activating GPCRs bind inactive heterotrimeric G-protein Gi
R-HSA-380073 Liganded Gi-activating GPCR acts as a GEF for Gi
R-HSA-380108 Chemokine receptors bind chemokines
R-HSA-418594 G alpha (i) signalling events
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-388396 GPCR downstream signalling
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-372790 Signaling by GPCR
R-HSA-500792 GPCR ligand binding
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: CCR4_HUMAN, CMKBR4, ENST00000330953.1, ENST00000330953.2, ENST00000330953.3, ENST00000330953.4, ENST00000330953.5, NM_005508, P51679, Q9ULY6, Q9ULY7, uc317tcg.1, uc317tcg.2
UCSC ID: ENST00000330953.6_4
RefSeq Accession: NM_005508.5
Protein: P51679 (aka CCR4_HUMAN or CKR4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.