Human Gene CCL18 (ENST00000616054.2_4) from GENCODE V47lift37
  Description: C-C motif chemokine ligand 18 (from RefSeq NM_002988.4)
Gencode Transcript: ENST00000616054.2_4
Gencode Gene: ENSG00000275385.2_7
Transcript (Including UTRs)
   Position: hg19 chr17:34,391,632-34,399,392 Size: 7,761 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr17:34,391,703-34,398,401 Size: 6,699 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:34,391,632-34,399,392)mRNA (may differ from genome)Protein (89 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CCL18_HUMAN
DESCRIPTION: RecName: Full=C-C motif chemokine 18; AltName: Full=Alternative macrophage activation-associated CC chemokine 1; Short=AMAC-1; AltName: Full=CC chemokine PARC; AltName: Full=Dendritic cell chemokine 1; Short=DC-CK1; AltName: Full=Macrophage inflammatory protein 4; Short=MIP-4; AltName: Full=Pulmonary and activation-regulated chemokine; AltName: Full=Small-inducible cytokine A18; Contains: RecName: Full=CCL18(1-68); Contains: RecName: Full=CCL18(3-69); Contains: RecName: Full=CCL18(4-69); Flags: Precursor;
FUNCTION: Chemotactic factor that attracts lymphocytes but not monocytes or granulocytes. May be involved in B-cell migration into B-cell follicles in lymph nodes. Attracts naive T-lymphocytes toward dendritic cells and activated macrophages in lymph nodes, has chemotactic activity for naive T-cells, CD4+ and CD8+ T-cells and thus may play a role in both humoral and cell-mediated immunity responses.
INTERACTION: Q9BZ71:PITPNM3; NbExp=4; IntAct=EBI-711240, EBI-2815766;
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Expressed at high levels in lung, lymph nodes, placenta, bone marrow, dendritic cells present in germinal centers and T-cell areas of secondary lymphoid organs and macrophages derived from peripheral blood monocytes. Not expressed by peripheral blood monocytes and a monocyte-to-macrophage differentiation is a prerequisite for expression. Expressed in synovial fluids from patients with rheumatoid and septic arthritis and in ovarian carcinoma ascitic fluid.
INDUCTION: Specifically induced in macrophages by IL4/interleukin- 4, IL13/interleukin-13, and IL10/interleukin-10. Expression is inhibited by IFNG/IFN-gamma while glucocorticoids exert a slightly positive synergistic effect in combination with IL4/interleukin-4. Strongly induced in several human cell lines, including monocytic U-937 cells, by phorbol myristate acetate (PMA). Induced in PBMC by staphylococcal enterotoxins SEA and SEB.
MASS SPECTROMETRY: Mass=7849.4; Method=Electrospray; Range=21-89; Source=PubMed:11745396;
MASS SPECTROMETRY: Mass=7652.1; Method=Electrospray; Range=23-89; Source=PubMed:11745396;
MASS SPECTROMETRY: Mass=7552.0; Method=Electrospray; Range=24-89; Source=PubMed:11745396;
SIMILARITY: Belongs to the intercrine beta (chemokine CC) family.
WEB RESOURCE: Name=Wikipedia; Note=CCL18 entry; URL="http://en.wikipedia.org/wiki/CCL18";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CCL18
Diseases sorted by gene-association score: gaucher's disease (7), pulmonary fibrosis (5), atopic dermatitis (4), niemann-pick disease (3), sarcoidosis 1 (2), pulmonary fibrosis, idiopathic (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.3071-0.272 Picture PostScript Text
3' UTR -269.20991-0.272 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000827 - Chemokine_CC_CS
IPR002473 - Chemokine_CXCL8/IL8
IPR001811 - Chemokine_IL8-like_dom

Pfam Domains:
PF00048 - Small cytokines (intecrine/chemokine), interleukin-8 like

SCOP Domains:
54117 - Interleukin 8-like chemokines

ModBase Predicted Comparative 3D Structure on P55774
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005125 cytokine activity
GO:0005515 protein binding
GO:0008009 chemokine activity
GO:0048020 CCR chemokine receptor binding

Biological Process:
GO:0002548 monocyte chemotaxis
GO:0006935 chemotaxis
GO:0006954 inflammatory response
GO:0006955 immune response
GO:0007154 cell communication
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007267 cell-cell signaling
GO:0010469 regulation of receptor activity
GO:0030593 neutrophil chemotaxis
GO:0031640 killing of cells of other organism
GO:0043547 positive regulation of GTPase activity
GO:0048247 lymphocyte chemotaxis
GO:0070098 chemokine-mediated signaling pathway
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0071346 cellular response to interferon-gamma
GO:0071347 cellular response to interleukin-1
GO:0071356 cellular response to tumor necrosis factor

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space


-  Descriptions from all associated GenBank mRNAs
  AB000221 - Homo sapiens mRNA for CC chemokine, complete cds.
Y13710 - Homo sapiens mRNA for alternative activated macrophage specific CC chemokine 1.
BC096124 - Homo sapiens chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated), mRNA (cDNA clone MGC:116770 IMAGE:40002484), complete cds.
BC096125 - Homo sapiens chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated), mRNA (cDNA clone MGC:116771 IMAGE:40002485), complete cds.
BC096126 - Homo sapiens chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated), mRNA (cDNA clone MGC:116772 IMAGE:40002487), complete cds.
BC096127 - Homo sapiens chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated), mRNA (cDNA clone MGC:116773 IMAGE:40002488), complete cds.
BC069700 - Homo sapiens chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated), mRNA (cDNA clone MGC:97365 IMAGE:7262626), complete cds.
JD190740 - Sequence 171764 from Patent EP1572962.
JD413625 - Sequence 394649 from Patent EP1572962.
JD261054 - Sequence 242078 from Patent EP1572962.
AB590849 - Synthetic construct DNA, clone: pFN21AE1582, Homo sapiens CCL18 gene for chemokine (C-C motif) ligand 18, without stop codon, in Flexi system.
HQ448456 - Synthetic construct Homo sapiens clone IMAGE:100071884; CCSB014038_02 chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated) (CCL18) gene, encodes complete protein.
KJ892109 - Synthetic construct Homo sapiens clone ccsbBroadEn_01503 CCL18 gene, encodes complete protein.
AB451458 - Homo sapiens CCL18 mRNA for small inducible cytokine A18 precursor, partial cds, clone: FLJ09009AAAF.
CR407660 - Homo sapiens full open reading frame cDNA clone RZPDo834F0116D for gene CCL18, chemokine (C-C motif) ligand 18 (pulmonary and activation-regula ted) complete cds, without stopcodon.
JD426345 - Sequence 407369 from Patent EP1572962.
JD494987 - Sequence 476011 from Patent EP1572962.
JD223126 - Sequence 204150 from Patent EP1572962.
JD457146 - Sequence 438170 from Patent EP1572962.
JD113178 - Sequence 94202 from Patent EP1572962.
JD314713 - Sequence 295737 from Patent EP1572962.
JD290352 - Sequence 271376 from Patent EP1572962.
JD148159 - Sequence 129183 from Patent EP1572962.
JD087879 - Sequence 68903 from Patent EP1572962.
JD563822 - Sequence 544846 from Patent EP1572962.
JD224327 - Sequence 205351 from Patent EP1572962.
JD182447 - Sequence 163471 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AMAC1, B5BUM2, CCL18_HUMAN, DCCK1, ENST00000616054.1, MIP4, NM_002988, P55774, PARC, Q53X71, SCYA18, uc327qgr.1, uc327qgr.2
UCSC ID: ENST00000616054.2_4
RefSeq Accession: NM_002988.4
Protein: P55774 (aka CCL18_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.