Human Gene CARD10 (ENST00000251973.10_7) from GENCODE V47lift37
  Description: caspase recruitment domain family member 10 (from RefSeq NM_014550.4)
Gencode Transcript: ENST00000251973.10_7
Gencode Gene: ENSG00000100065.15_11
Transcript (Including UTRs)
   Position: hg19 chr22:37,886,400-37,915,422 Size: 29,023 Total Exon Count: 20 Strand: -
Coding Region
   Position: hg19 chr22:37,887,197-37,915,207 Size: 28,011 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:37,886,400-37,915,422)mRNA (may differ from genome)Protein (1032 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CAR10_HUMAN
DESCRIPTION: RecName: Full=Caspase recruitment domain-containing protein 10; AltName: Full=CARD-containing MAGUK protein 3; Short=Carma 3;
FUNCTION: Activates NF-kappa-B via BCL10 and IKK.
SUBUNIT: CARD10 and BCL10 bind to each other by CARD-CARD interaction. They both participate in a complex with MALT1, where MALT1 binds to BCL10 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
TISSUE SPECIFICITY: Detected in adult heart, kidney and liver; lower levels in intestine, placenta, muscle and lung. Also found in fetal lung, liver and kidney.
SIMILARITY: Contains 1 CARD domain.
CAUTION: Supposed to contain a SH3, a PDZ and a guanylate kinase- like domain. But none of these 3 domains are detected by PROSITE, Pfam or SMART.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CARD10
Diseases sorted by gene-association score: glaucoma 1, open angle, e (13)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • D000082 Acetaminophen
  • C016403 2,4-dinitrotoluene
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D016604 Aflatoxin B1
  • D001151 Arsenic
  • D001564 Benzo(a)pyrene
  • D020111 Chlorodiphenyl (54% Chlorine)
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.17 RPKM in Testis
Total median expression: 243.32 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -112.40215-0.523 Picture PostScript Text
3' UTR -303.30797-0.381 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001315 - CARD
IPR011029 - DEATH-like

Pfam Domains:
PF00619 - Caspase recruitment domain

SCOP Domains:
47986 - DEATH domain
52540 - P-loop containing nucleoside triphosphate hydrolases
57997 - Tropomyosin

ModBase Predicted Comparative 3D Structure on Q9BWT7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0030159 receptor signaling complex scaffold activity

Biological Process:
GO:0007250 activation of NF-kappaB-inducing kinase activity
GO:0042981 regulation of apoptotic process
GO:0065003 macromolecular complex assembly
GO:0090051 negative regulation of cell migration involved in sprouting angiogenesis
GO:1900182 positive regulation of protein localization to nucleus

Cellular Component:
GO:0005737 cytoplasm
GO:0032449 CBM complex


-  Descriptions from all associated GenBank mRNAs
  BC051720 - Homo sapiens cDNA clone IMAGE:4821911.
LF210350 - JP 2014500723-A/17853: Polycomb-Associated Non-Coding RNAs.
AK057334 - Homo sapiens cDNA FLJ32772 fis, clone TESTI2001968.
AY032928 - Homo sapiens CARD-containing MAGUK 3 protein (CARMA3) mRNA, complete cds.
AY028896 - Homo sapiens caspase recruitment domain protein 10 mRNA, complete cds.
AK074906 - Homo sapiens cDNA FLJ90425 fis, clone NT2RP3000444.
JD284452 - Sequence 265476 from Patent EP1572962.
JD456725 - Sequence 437749 from Patent EP1572962.
JD098465 - Sequence 79489 from Patent EP1572962.
JD274304 - Sequence 255328 from Patent EP1572962.
JD195185 - Sequence 176209 from Patent EP1572962.
JD421321 - Sequence 402345 from Patent EP1572962.
JD213562 - Sequence 194586 from Patent EP1572962.
JD080525 - Sequence 61549 from Patent EP1572962.
JD090689 - Sequence 71713 from Patent EP1572962.
JD115311 - Sequence 96335 from Patent EP1572962.
JD200692 - Sequence 181716 from Patent EP1572962.
JD324993 - Sequence 306017 from Patent EP1572962.
JD180979 - Sequence 162003 from Patent EP1572962.
JD369158 - Sequence 350182 from Patent EP1572962.
JD521024 - Sequence 502048 from Patent EP1572962.
JD394252 - Sequence 375276 from Patent EP1572962.
AK296176 - Homo sapiens cDNA FLJ57509 complete cds, highly similar to Caspase recruitment domain-containing protein 10.
JD546113 - Sequence 527137 from Patent EP1572962.
BC113659 - Homo sapiens caspase recruitment domain family, member 10, mRNA (cDNA clone MGC:142219 IMAGE:8322711), complete cds.
BC117403 - Homo sapiens caspase recruitment domain family, member 10, mRNA (cDNA clone MGC:151012 IMAGE:40125954), complete cds.
JD155075 - Sequence 136099 from Patent EP1572962.
AB590902 - Synthetic construct DNA, clone: pFN21AB0488, Homo sapiens CARD10 gene for caspase recruitment domain family, member 10, without stop codon, in Flexi system.
AF086324 - Homo sapiens full length insert cDNA clone ZD53E07.
BC032058 - Homo sapiens caspase recruitment domain family, member 10, mRNA (cDNA clone IMAGE:5169757).
LF337214 - JP 2014500723-A/144717: Polycomb-Associated Non-Coding RNAs.
LF337215 - JP 2014500723-A/144718: Polycomb-Associated Non-Coding RNAs.
LF212615 - JP 2014500723-A/20118: Polycomb-Associated Non-Coding RNAs.
LF213373 - JP 2014500723-A/20876: Polycomb-Associated Non-Coding RNAs.
MA445927 - JP 2018138019-A/17853: Polycomb-Associated Non-Coding RNAs.
MA572791 - JP 2018138019-A/144717: Polycomb-Associated Non-Coding RNAs.
MA572792 - JP 2018138019-A/144718: Polycomb-Associated Non-Coding RNAs.
MA448192 - JP 2018138019-A/20118: Polycomb-Associated Non-Coding RNAs.
MA448950 - JP 2018138019-A/20876: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: CAR10_HUMAN, CARMA3, ENST00000251973.1, ENST00000251973.2, ENST00000251973.3, ENST00000251973.4, ENST00000251973.5, ENST00000251973.6, ENST00000251973.7, ENST00000251973.8, ENST00000251973.9, NM_014550, Q14CQ8, Q5TFG6, Q8NC81, Q9BWT7, Q9UGR5, Q9UGR6, Q9Y3H0, uc317ffo.1, uc317ffo.2
UCSC ID: ENST00000251973.10_7
RefSeq Accession: NM_014550.4
Protein: Q9BWT7 (aka CAR10_HUMAN or CARA_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.