Human Gene CALCR (ENST00000426151.7_8) from GENCODE V47lift37
  Description: calcitonin receptor, transcript variant 2 (from RefSeq NM_001742.4)
Gencode Transcript: ENST00000426151.7_8
Gencode Gene: ENSG00000004948.16_12
Transcript (Including UTRs)
   Position: hg19 chr7:93,053,798-93,204,036 Size: 150,239 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr7:93,055,668-93,116,293 Size: 60,626 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:93,053,798-93,204,036)mRNA (may differ from genome)Protein (474 aa)
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-  Comments and Description Text from UniProtKB
  ID: CALCR_HUMAN
DESCRIPTION: RecName: Full=Calcitonin receptor; Short=CT-R; Flags: Precursor;
FUNCTION: This is a receptor for calcitonin. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. The calcitonin receptor is thought to couple to the heterotrimeric guanosine triphosphate-binding protein that is sensitive to cholera toxin.
SUBUNIT: Interacts with GPRASP2.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
POLYMORPHISM: Genetic variations in CALCR may be correlated with bone mineral density (BMD). Low BMD is a risk factor for osteoporotic fracture. Osteoporosis is characterized by reduced bone mineral density, disrutption of bone microarchitecture, and the alteration of the amount and variety of non-collagenous proteins in bone. Osteoporotic bones are more at risk of fracture.
SIMILARITY: Belongs to the G-protein coupled receptor 2 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CALCR
Diseases sorted by gene-association score: osteoporosis* (358), pigmented villonodular synovitis (11), giant cell reparative granuloma (8), bone giant cell tumor (7)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.85 RPKM in Brain - Hypothalamus
Total median expression: 3.87 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -112.60277-0.406 Picture PostScript Text
3' UTR -424.101870-0.227 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003287 - GCPR_2_calcitonin_rcpt_fam
IPR017981 - GPCR_2-like
IPR001688 - GPCR_2_calcitonin_rcpt
IPR001879 - GPCR_2_extracellular_dom
IPR000832 - GPCR_2_secretin-like
IPR017983 - GPCR_2_secretin-like_CS

Pfam Domains:
PF00002 - 7 transmembrane receptor (Secretin family)
PF02793 - Hormone receptor domain

SCOP Domains:
81321 - Family A G protein-coupled receptor-like
111418 - Hormone receptor domain

ModBase Predicted Comparative 3D Structure on P30988
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001635 calcitonin gene-related peptide receptor activity
GO:0004871 signal transducer activity
GO:0004888 transmembrane signaling receptor activity
GO:0004930 G-protein coupled receptor activity
GO:0004948 calcitonin receptor activity
GO:0005515 protein binding
GO:0032841 calcitonin binding
GO:0097643 amylin receptor activity

Biological Process:
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007189 adenylate cyclase-activating G-protein coupled receptor signaling pathway
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0010628 positive regulation of gene expression
GO:0010739 positive regulation of protein kinase A signaling
GO:0010942 positive regulation of cell death
GO:0030816 positive regulation of cAMP metabolic process
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0038041 cross-receptor inhibition within G-protein coupled receptor heterodimer
GO:0045762 positive regulation of adenylate cyclase activity
GO:0051384 response to glucocorticoid
GO:0051897 positive regulation of protein kinase B signaling
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0097647 amylin receptor signaling pathway
GO:1905665 positive regulation of calcium ion import across plasma membrane
GO:0007190 activation of adenylate cyclase activity
GO:0007202 activation of phospholipase C activity

Cellular Component:
GO:0005622 intracellular
GO:0005623 cell
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:1903440 amylin receptor complex


-  Descriptions from all associated GenBank mRNAs
  X69920 - H.sapiens mRNA for calcitonin receptor.
L00587 - Human calcitonin receptor mRNA, complete cds.
BC069611 - Homo sapiens calcitonin receptor, mRNA (cDNA clone MGC:97096 IMAGE:7262314), complete cds.
BC075028 - Homo sapiens calcitonin receptor, mRNA (cDNA clone MGC:104163 IMAGE:30915624), complete cds.
X82466 - H.sapiens mRNA for calcitonin receptor.
FN994993 - Homo sapiens mRNA for calcitonin receptor (CALCR gene), transcript variant 2, isolate 1.
FN994995 - Homo sapiens mRNA for calcitonin receptor (CALCR gene), transcript variant 2, isolate 3.
FN994994 - Homo sapiens mRNA for calcitonin receptor (CALCR gene), transcript variant 2, isolate 2.
FN994996 - Homo sapiens mRNA for calcitonin receptor (CALCR gene), transcript variant 2, isolate 4.
U26554 - Human calcitonin receptor isoform mRNA, complete cds.
AB022178 - Homo sapiens mRNA for calcitonin receptor, complete cds, isolate from bone marrow osteoclast.
U26553 - Human calcitonin receptor mRNA, complete cds.
AB022177 - Homo sapiens mRNA for calcitonin receptor, complete cds, isolate from breast carcinoma.
AJ831406 - Homo sapiens mRNA for calcitonin receptor isoform 6 (HCTR-6 gene).
AJ831407 - Homo sapiens mRNA for calcitonin receptor isoform 5 (HCTR-5 gene).
AY430048 - Homo sapiens calcitonin receptor mRNA, complete cds.
AK313996 - Homo sapiens cDNA, FLJ94649, Homo sapiens calcitonin receptor (CALCR), mRNA.
JD237859 - Sequence 218883 from Patent EP1572962.
JD280796 - Sequence 261820 from Patent EP1572962.
JD248038 - Sequence 229062 from Patent EP1572962.
JD352319 - Sequence 333343 from Patent EP1572962.
JD375361 - Sequence 356385 from Patent EP1572962.
JD373600 - Sequence 354624 from Patent EP1572962.
JD390254 - Sequence 371278 from Patent EP1572962.
JD292956 - Sequence 273980 from Patent EP1572962.
JD175468 - Sequence 156492 from Patent EP1572962.
JD360056 - Sequence 341080 from Patent EP1572962.
JD463468 - Sequence 444492 from Patent EP1572962.
JD093296 - Sequence 74320 from Patent EP1572962.
JD184706 - Sequence 165730 from Patent EP1572962.
CU686934 - Synthetic construct Homo sapiens gateway clone IMAGE:100022623 5' read CALCR mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P30988 (Reactome details) participates in the following event(s):

R-HSA-419843 Calcitonin receptor binds calcitonin
R-HSA-744886 The Ligand:GPCR:Gs complex dissociates
R-HSA-744887 Liganded Gs-activating GPCRs bind inactive heterotrimeric Gs
R-HSA-420265 Amylin receptors can bind Amylin
R-HSA-379044 Liganded Gs-activating GPCR acts as a GEF for Gs
R-HSA-419812 Calcitonin-like ligand receptors
R-HSA-418555 G alpha (s) signalling events
R-HSA-373080 Class B/2 (Secretin family receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0C4DG16, A4D1G6, CALCR , CALCR_HUMAN, ENST00000426151.1, ENST00000426151.2, ENST00000426151.3, ENST00000426151.4, ENST00000426151.5, ENST00000426151.6, F5H605, NM_001742, O14585, P30988, Q13941, Q5ZGL8, Q659U6, Q6DJU8, Q6T712, uc319vhq.1, uc319vhq.2
UCSC ID: ENST00000426151.7_8
RefSeq Accession: NM_001742.4
Protein: P30988 (aka CALCR_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.