Human Gene C1QTNF9B (ENST00000713589.1_2) from GENCODE V47lift37
  Description: C1q and TNF related 9B (from HGNC C1QTNF9B)
Gencode Transcript: ENST00000713589.1_2
Gencode Gene: ENSG00000205863.12_9
Transcript (Including UTRs)
   Position: hg19 chr13:24,465,238-24,471,641 Size: 6,404 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr13:24,465,428-24,471,125 Size: 5,698 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersGene AllelesRNA StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:24,465,238-24,471,641)mRNA (may differ from genome)Protein (333 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -54.10210-0.258 Picture PostScript Text
3' UTR -35.10190-0.185 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  BC110413 - Homo sapiens collagen triple helix repeat-containing, mRNA (cDNA clone IMAGE:5761534), complete cds.
BC137004 - Homo sapiens collagen triple helix repeat-containing, mRNA (cDNA clone MGC:168620 IMAGE:9020997), complete cds.
BC137006 - Homo sapiens collagen triple helix repeat-containing, mRNA (cDNA clone MGC:168622 IMAGE:9020999), complete cds.
BC144450 - Homo sapiens cDNA clone IMAGE:9052976.
JD187069 - Sequence 168093 from Patent EP1572962.
KJ900697 - Synthetic construct Homo sapiens clone ccsbBroadEn_10091 C1QTNF9B gene, encodes complete protein.
CU691876 - Synthetic construct Homo sapiens gateway clone IMAGE:100021124 5' read C1QTNF9 mRNA.
JD117898 - Sequence 98922 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001007537, uc331oid.1, uc331oid.2
UCSC ID: ENST00000713589.1_2
Representative RNA: NM_001007537

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.