Human Gene BPNT1 (ENST00000322067.12_8) from GENCODE V47lift37

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Description: 3'(2'), 5'-bisphosphate nucleotidase 1, transcript variant 1 (from RefSeq NM_006085.6)
Gencode Transcript: ENST00000322067.12_8
Gencode Gene: ENSG00000162813.18_12
Transcript (Including UTRs)
Position: hg19 chr1:220,230,824-220,263,130 Size: 32,307 Total Exon Count: 9 Strand: -
Coding Region
Position: hg19 chr1:220,232,186-220,253,188 Size: 21,003 Coding Exon Count: 8

Page Index	Sequence and Links	Primers	CTD	Gene Alleles	RNA-Seq Expression
Microarray Expression	RNA Structure	Other Species	mRNA Descriptions	Other Names	Model Information
Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr1:220,230,824-220,263,130)			mRNA (may differ from genome)		Protein (308 aa)
Gene Sorter	Genome Browser	Other Species FASTA	VisiGene	Gene interactions	Table Schema
AlphaFold	BioGPS	Ensembl	Entrez Gene	ExonPrimer	GeneCards
HGNC	MGI	OMIM	PubMed	UniProtKB	BioGrid CRISPR DB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D000082 Acetaminophen C009618 O,O-diethyl O-3,5,6-trichloro-2-pyridyl phosphate D013749 Tetrachlorodibenzodioxin C049325 1,2-dithiol-3-thione C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl C016403 2,4-dinitrotoluene C023514 2,6-dinitrotoluene C035207 4-amino-2,6-dinitrotoluene D000643 Ammonium Chloride C038328 BEP protocol more ... click here to view the complete list

Common Gene Haplotype Alleles


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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 14.42 RPKM in Cells - EBV-transformed lymphocytes Total median expression: 276.43 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-33.30	111	-0.300	Picture	PostScript	Text
3' UTR	-530.20	1362	-0.389	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog
Gene Details	Gene Details
Gene Sorter	Gene Sorter
	RGD

Descriptions from all associated GenBank mRNAs


	LF383670 - JP 2014500723-A/191173: Polycomb-Associated Non-Coding RNAs. AK021941 - Homo sapiens cDNA FLJ11879 fis, clone HEMBA1007121, highly similar to Homo sapiens bisphosphate 3'-nucleotidase mRNA. AF125042 - Homo sapiens bisphosphate 3'-nucleotidase mRNA, complete cds. EU794594 - Homo sapiens epididymis luminal protein 20 (HEL20) mRNA, complete cds. BC017801 - Homo sapiens 3'(2'), 5'-bisphosphate nucleotidase 1, mRNA (cDNA clone MGC:22359 IMAGE:4338207), complete cds. KJ902097 - Synthetic construct Homo sapiens clone ccsbBroadEn_11491 BPNT1 gene, encodes complete protein. LF321343 - JP 2014500723-A/128846: Polycomb-Associated Non-Coding RNAs. AK315962 - Homo sapiens cDNA, FLJ78861 complete cds, highly similar to 3'(2'),5'-bisphosphate nucleotidase 1 (EC 3.1.3.7). DQ574581 - Homo sapiens piRNA piR-42693, complete sequence. AJ249339 - Homo sapiens mRNA for PAP-inositol-1,4-phosphatase (PIP gene). AK300777 - Homo sapiens cDNA FLJ52417 complete cds, highly similar to 3'(2'),5'-bisphosphate nucleotidase 1 (EC 3.1.3.7). JD431070 - Sequence 412094 from Patent EP1572962. JD558504 - Sequence 539528 from Patent EP1572962. JD326885 - Sequence 307909 from Patent EP1572962. JD136432 - Sequence 117456 from Patent EP1572962. JD538012 - Sequence 519036 from Patent EP1572962. JD354449 - Sequence 335473 from Patent EP1572962. JD492995 - Sequence 474019 from Patent EP1572962. AK298476 - Homo sapiens cDNA FLJ52203 complete cds, highly similar to 3'(2'),5'-bisphosphate nucleotidase 1 (EC 3.1.3.7). JD482846 - Sequence 463870 from Patent EP1572962. JD277705 - Sequence 258729 from Patent EP1572962. JD117246 - Sequence 98270 from Patent EP1572962. JD319624 - Sequence 300648 from Patent EP1572962. JD441467 - Sequence 422491 from Patent EP1572962. JD558361 - Sequence 539385 from Patent EP1572962. JD564456 - Sequence 545480 from Patent EP1572962. HM005342 - Homo sapiens clone HTL-T-29 testicular tissue protein Li 29 mRNA, complete cds. AK291943 - Homo sapiens cDNA FLJ75757 complete cds, highly similar to Homo sapiens mRNA for PAP-inositol-1,4-phosphatase (PIP gene). LF321342 - JP 2014500723-A/128845: Polycomb-Associated Non-Coding RNAs. LF321341 - JP 2014500723-A/128844: Polycomb-Associated Non-Coding RNAs. LF321340 - JP 2014500723-A/128843: Polycomb-Associated Non-Coding RNAs. LF321339 - JP 2014500723-A/128842: Polycomb-Associated Non-Coding RNAs. LF321336 - JP 2014500723-A/128839: Polycomb-Associated Non-Coding RNAs. LF321334 - JP 2014500723-A/128837: Polycomb-Associated Non-Coding RNAs. LF321333 - JP 2014500723-A/128836: Polycomb-Associated Non-Coding RNAs. JD548676 - Sequence 529700 from Patent EP1572962. JD300801 - Sequence 281825 from Patent EP1572962. MA619247 - JP 2018138019-A/191173: Polycomb-Associated Non-Coding RNAs. MA556920 - JP 2018138019-A/128846: Polycomb-Associated Non-Coding RNAs. MA556919 - JP 2018138019-A/128845: Polycomb-Associated Non-Coding RNAs. MA556918 - JP 2018138019-A/128844: Polycomb-Associated Non-Coding RNAs. MA556917 - JP 2018138019-A/128843: Polycomb-Associated Non-Coding RNAs. MA556916 - JP 2018138019-A/128842: Polycomb-Associated Non-Coding RNAs. MA556913 - JP 2018138019-A/128839: Polycomb-Associated Non-Coding RNAs. MA556911 - JP 2018138019-A/128837: Polycomb-Associated Non-Coding RNAs. MA556910 - JP 2018138019-A/128836: Polycomb-Associated Non-Coding RNAs.

Other Names for This Gene


	Alternate Gene Symbols: ENST00000322067.1, ENST00000322067.10, ENST00000322067.11, ENST00000322067.2, ENST00000322067.3, ENST00000322067.4, ENST00000322067.5, ENST00000322067.6, ENST00000322067.7, ENST00000322067.8, ENST00000322067.9, HEL20 , NM_006085, uc317rew.1, uc317rew.2, V9HWF9, V9HWF9_HUMAN UCSC ID: ENST00000322067.12_8 RefSeq Accession: NM_006085.6

Gene Model Information


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Methods, Credits, and Use Restrictions


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