Human Gene BCL2L2 (ENST00000250405.10_12) from GENCODE V47lift37
  Description: BCL2 like 2, transcript variant 1 (from RefSeq NM_004050.5)
Gencode Transcript: ENST00000250405.10_12
Gencode Gene: ENSG00000129473.11_17
Transcript (Including UTRs)
   Position: hg19 chr14:23,776,042-23,780,960 Size: 4,919 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr14:23,776,977-23,778,174 Size: 1,198 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:23,776,042-23,780,960)mRNA (may differ from genome)Protein (193 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: B2CL2_HUMAN
DESCRIPTION: RecName: Full=Bcl-2-like protein 2; Short=Bcl2-L-2; AltName: Full=Apoptosis regulator Bcl-W;
FUNCTION: Promotes cell survival. Blocks dexamethasone-induced apoptosis. Mediates survival of postmitotic Sertoli cells by suppressing death-promoting activity of BAX.
INTERACTION: Q07812:BAX; NbExp=3; IntAct=EBI-707714, EBI-516580; Q9BXH1:BBC3; NbExp=2; IntAct=EBI-707714, EBI-519884; O43521:BCL2L11; NbExp=4; IntAct=EBI-707714, EBI-526406; P55957:BID; NbExp=5; IntAct=EBI-707714, EBI-519672; Q13323:BIK; NbExp=2; IntAct=EBI-707714, EBI-700794; Q91ZE9:Bmf (xeno); NbExp=2; IntAct=EBI-707714, EBI-708032;
SUBCELLULAR LOCATION: Mitochondrion membrane; Peripheral membrane protein. Note=Loosely associated with the mitochondrial membrane in healthy cells. During apoptosis, tightly bound to the membrane.
TISSUE SPECIFICITY: Expressed (at protein level) in a wide range of tissues with highest levels in brain, spinal cord, testis, pancreas, heart, spleen and mammary glands. Moderate levels found in thymus, ovary and small intestine. Not detected in salivary gland, muscle or liver. Also expressed in cell lines of myeloid, fibroblast and epithelial origin. Not detected in most lymphoid cell lines.
DOMAIN: The BH4 motif seems to be involved in the anti-apoptotic function.
DOMAIN: The BH1 and BH2 motifs form a hydrophobic groove which acts as a docking site for the BH3 domain of some pro-apoptotic proteins. The C-terminal residues of BCL2L2 fold into the BH3- binding cleft and modulate pro-survival activity by regulating ligand access. When BH3 domain-containing proteins bind, they displace the C-terminus, allowing its insertion into the membrane and neutralizing the pro-survival activity of BCL2L2.
SIMILARITY: Belongs to the Bcl-2 family.
SEQUENCE CAUTION: Sequence=BAA19666.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BCL2L2
Diseases sorted by gene-association score: small intestinal adenocarcinoma (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 74.69 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 1969.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -65.40158-0.414 Picture PostScript Text
3' UTR -990.802786-0.356 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013280 - Apop_reg_BclW
IPR002475 - Bcl2-like
IPR020717 - Bcl2_BH1_motif_CS
IPR020726 - Bcl2_BH2_motif_CS
IPR003093 - Bcl2_BH4
IPR020731 - Bcl2_BH4_motif_CS
IPR026298 - Blc2_fam

Pfam Domains:
PF00452 - Apoptosis regulator proteins, Bcl-2 family
PF02180 - Bcl-2 homology region 4

SCOP Domains:
56854 - Bcl-2 inhibitors of programmed cell death

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1MK3 - NMR MuPIT 1O0L - NMR MuPIT 1ZY3 - NMR MuPIT 2Y6W - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q92843
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0046982 protein heterodimerization activity
GO:0051400 BH domain binding
GO:0097718 disordered domain specific binding

Biological Process:
GO:0006915 apoptotic process
GO:0007283 spermatogenesis
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage
GO:0042981 regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0060011 Sertoli cell proliferation
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005829 cytosol
GO:0016020 membrane
GO:0031966 mitochondrial membrane
GO:0097136 Bcl-2 family protein complex


-  Descriptions from all associated GenBank mRNAs
  LF210079 - JP 2014500723-A/17582: Polycomb-Associated Non-Coding RNAs.
AK289519 - Homo sapiens cDNA FLJ75568 complete cds, highly similar to Homo sapiens BCL2-like 2 (BCL2L2), mRNA.
BC104789 - Homo sapiens BCL2-like 2, mRNA (cDNA clone MGC:132449 IMAGE:8143792), complete cds.
BC113522 - Homo sapiens BCL2-like 2, mRNA (cDNA clone MGC:142082 IMAGE:8322574), complete cds.
D87461 - Homo sapiens mRNA for KIAA0271 gene.
BC011637 - Homo sapiens mRNA similar to BCL2-like 2 (cDNA clone IMAGE:4106836).
JD398021 - Sequence 379045 from Patent EP1572962.
JD209450 - Sequence 190474 from Patent EP1572962.
BC021198 - Homo sapiens BCL2-like 2, mRNA (cDNA clone MGC:10675 IMAGE:3944307), complete cds.
JD118299 - Sequence 99323 from Patent EP1572962.
JD372007 - Sequence 353031 from Patent EP1572962.
JD292949 - Sequence 273973 from Patent EP1572962.
JD444471 - Sequence 425495 from Patent EP1572962.
AB383828 - Synthetic construct DNA, clone: pF1KSDA0271, Homo sapiens BCL2L2 gene for apoptosis regulator Bcl-W, complete cds, without stop codon, in Flexi system.
BT019549 - Homo sapiens BCL2-like 2 mRNA, complete cds.
HQ258092 - Synthetic construct Homo sapiens clone IMAGE:100072401 BCL2-like 2 (BCL2L2) gene, encodes complete protein.
KJ896487 - Synthetic construct Homo sapiens clone ccsbBroadEn_05881 BCL2L2 gene, encodes complete protein.
U59747 - Human Bcl-w (bcl-w) mRNA, complete cds.
JD538687 - Sequence 519711 from Patent EP1572962.
JD146382 - Sequence 127406 from Patent EP1572962.
LF334529 - JP 2014500723-A/142032: Polycomb-Associated Non-Coding RNAs.
JD042800 - Sequence 23824 from Patent EP1572962.
JD062881 - Sequence 43905 from Patent EP1572962.
JD220568 - Sequence 201592 from Patent EP1572962.
JD223120 - Sequence 204144 from Patent EP1572962.
JD092583 - Sequence 73607 from Patent EP1572962.
JD468619 - Sequence 449643 from Patent EP1572962.
JD384264 - Sequence 365288 from Patent EP1572962.
JD466595 - Sequence 447619 from Patent EP1572962.
JD540048 - Sequence 521072 from Patent EP1572962.
JD267215 - Sequence 248239 from Patent EP1572962.
JD349318 - Sequence 330342 from Patent EP1572962.
LF334530 - JP 2014500723-A/142033: Polycomb-Associated Non-Coding RNAs.
JD279359 - Sequence 260383 from Patent EP1572962.
JD361767 - Sequence 342791 from Patent EP1572962.
JD290414 - Sequence 271438 from Patent EP1572962.
JD403760 - Sequence 384784 from Patent EP1572962.
JD457852 - Sequence 438876 from Patent EP1572962.
JD516816 - Sequence 497840 from Patent EP1572962.
JD172694 - Sequence 153718 from Patent EP1572962.
JD445778 - Sequence 426802 from Patent EP1572962.
JD214087 - Sequence 195111 from Patent EP1572962.
JD043645 - Sequence 24669 from Patent EP1572962.
JD454273 - Sequence 435297 from Patent EP1572962.
JD403587 - Sequence 384611 from Patent EP1572962.
JD357268 - Sequence 338292 from Patent EP1572962.
JD511026 - Sequence 492050 from Patent EP1572962.
JD480812 - Sequence 461836 from Patent EP1572962.
JD222603 - Sequence 203627 from Patent EP1572962.
JD322630 - Sequence 303654 from Patent EP1572962.
LF334531 - JP 2014500723-A/142034: Polycomb-Associated Non-Coding RNAs.
JD353423 - Sequence 334447 from Patent EP1572962.
JD130533 - Sequence 111557 from Patent EP1572962.
JD308339 - Sequence 289363 from Patent EP1572962.
JD145499 - Sequence 126523 from Patent EP1572962.
JD392859 - Sequence 373883 from Patent EP1572962.
JD476590 - Sequence 457614 from Patent EP1572962.
JD298209 - Sequence 279233 from Patent EP1572962.
JD289708 - Sequence 270732 from Patent EP1572962.
JD511181 - Sequence 492205 from Patent EP1572962.
JD307926 - Sequence 288950 from Patent EP1572962.
JD498802 - Sequence 479826 from Patent EP1572962.
JD245667 - Sequence 226691 from Patent EP1572962.
JD464399 - Sequence 445423 from Patent EP1572962.
DQ572317 - Homo sapiens piRNA piR-40429, complete sequence.
JD052152 - Sequence 33176 from Patent EP1572962.
JD043794 - Sequence 24818 from Patent EP1572962.
JD207831 - Sequence 188855 from Patent EP1572962.
JD214214 - Sequence 195238 from Patent EP1572962.
JD103685 - Sequence 84709 from Patent EP1572962.
JD346017 - Sequence 327041 from Patent EP1572962.
JD293058 - Sequence 274082 from Patent EP1572962.
JD553937 - Sequence 534961 from Patent EP1572962.
JD381391 - Sequence 362415 from Patent EP1572962.
LF334533 - JP 2014500723-A/142036: Polycomb-Associated Non-Coding RNAs.
LF334534 - JP 2014500723-A/142037: Polycomb-Associated Non-Coding RNAs.
MA445656 - JP 2018138019-A/17582: Polycomb-Associated Non-Coding RNAs.
MA570106 - JP 2018138019-A/142032: Polycomb-Associated Non-Coding RNAs.
MA570107 - JP 2018138019-A/142033: Polycomb-Associated Non-Coding RNAs.
MA570108 - JP 2018138019-A/142034: Polycomb-Associated Non-Coding RNAs.
MA570110 - JP 2018138019-A/142036: Polycomb-Associated Non-Coding RNAs.
MA570111 - JP 2018138019-A/142037: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K0F4, B2CL2_HUMAN, BCLW, ENST00000250405.1, ENST00000250405.2, ENST00000250405.3, ENST00000250405.4, ENST00000250405.5, ENST00000250405.6, ENST00000250405.7, ENST00000250405.8, ENST00000250405.9, KIAA0271, NM_004050, Q2M3U0, Q5U0H4, Q92843, uc317fbp.1, uc317fbp.2
UCSC ID: ENST00000250405.10_12
RefSeq Accession: NM_004050.5
Protein: Q92843 (aka B2CL2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.