Human Gene BANP (ENST00000682872.1_5) from GENCODE V47lift37

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Description: BTG3 associated nuclear protein, transcript variant 31 (from RefSeq NM_001386991.1)
Gencode Transcript: ENST00000682872.1_5
Gencode Gene: ENSG00000172530.22_20
Transcript (Including UTRs)
Position: hg19 chr16:87,985,040-88,110,922 Size: 125,883 Total Exon Count: 14 Strand: +
Coding Region
Position: hg19 chr16:88,008,722-88,110,267 Size: 101,546 Coding Exon Count: 13

Page Index	Sequence and Links	Primers	CTD	Gene Alleles	Microarray Expression
RNA Structure	Other Species	mRNA Descriptions	Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr16:87,985,040-88,110,922)			mRNA (may differ from genome)		Protein (530 aa)
Gene Sorter	Genome Browser	Other Species FASTA	VisiGene	Gene interactions	Table Schema
AlphaFold	BioGPS	Ensembl	ExonPrimer	GeneCards	HGNC
MGI	PubMed	UniProtKB	Wikipedia

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D013749 Tetrachlorodibenzodioxin C023514 2,6-dinitrotoluene D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide D020111 Chlorodiphenyl (54% Chlorine) D002994 Clofibrate D004997 Ethinyl Estradiol D004397 Fonofos D006861 Hydrogen Peroxide D007649 Ketamine C568608 PCI 5002 more ... click here to view the complete list

Common Gene Haplotype Alleles


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Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-38.60	150	-0.257	Picture	PostScript	Text
3' UTR	-229.90	655	-0.351	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog
Gene Details	Gene Details
Gene Sorter	Gene Sorter
	RGD

Descriptions from all associated GenBank mRNAs


	BC018247 - Homo sapiens BTG3 associated nuclear protein, mRNA (cDNA clone IMAGE:3048680), with apparent retained intron. AK001039 - Homo sapiens cDNA FLJ10177 fis, clone HEMBA1004097, highly similar to Homo sapiens BTG3 associated nuclear protein (BANP), transcript variant 1, mRNA. AK315089 - Homo sapiens cDNA, FLJ96046, Homo sapiens BTG3 associated nuclear protein (BANP), transcriptvariant 2, mRNA. AK125232 - Homo sapiens cDNA FLJ43242 fis, clone HEART1000074, highly similar to Homo sapiens BTG3 associated nuclear protein (BANP), transcript variant 2, mRNA. AK293472 - Homo sapiens cDNA FLJ58129 complete cds, highly similar to Homo sapiens BTG3 associated nuclear protein (BANP), transcript variant 1, mRNA. AK297945 - Homo sapiens cDNA FLJ59359 complete cds, highly similar to Homo sapiens BTG3 associated nuclear protein (BANP), transcript variant 2, mRNA. BC009424 - Homo sapiens BTG3 associated nuclear protein, mRNA (cDNA clone MGC:15188 IMAGE:3530821), complete cds. AK315535 - Homo sapiens cDNA, FLJ96601. AK094158 - Homo sapiens cDNA FLJ36839 fis, clone ASTRO2011437, highly similar to Mus musculus SMAR1 mRNA. AB590385 - Synthetic construct DNA, clone: pFN21AE1124, Homo sapiens BANP gene for BTG3 associated nuclear protein, without stop codon, in Flexi system. KU178664 - Homo sapiens BTG3 associated nuclear protein isoform 1 (BANP) mRNA, partial cds. KU178665 - Homo sapiens BTG3 associated nuclear protein isoform 2 (BANP) mRNA, complete cds, alternatively spliced. KU178666 - Homo sapiens BTG3 associated nuclear protein isoform 3 (BANP) mRNA, complete cds, alternatively spliced. KU178667 - Homo sapiens BTG3 associated nuclear protein isoform 4 (BANP) mRNA, partial cds. KU178668 - Homo sapiens BTG3 associated nuclear protein isoform 5 (BANP) mRNA, partial cds. KU178669 - Homo sapiens BTG3 associated nuclear protein isoform 7 (BANP) mRNA, partial cds, alternatively spliced. KU178670 - Homo sapiens BTG3 associated nuclear protein isoform 8 (BANP) mRNA, complete cds, alternatively spliced. DQ893176 - Synthetic construct clone IMAGE:100005806; FLH194647.01X; RZPDo839D0780D BTG3 associated nuclear protein (BANP) gene, encodes complete protein. DQ896475 - Synthetic construct Homo sapiens clone IMAGE:100010935; FLH194643.01L; RZPDo839D0770D BTG3 associated nuclear protein (BANP) gene, encodes complete protein. KJ899043 - Synthetic construct Homo sapiens clone ccsbBroadEn_08437 BANP gene, encodes complete protein. AK000545 - Homo sapiens cDNA FLJ20538 fis, clone KAT11255. JD186326 - Sequence 167350 from Patent EP1572962. CU679357 - Synthetic construct Homo sapiens gateway clone IMAGE:100018326 5' read BANP mRNA. AL157429 - Homo sapiens mRNA; cDNA DKFZp761H172 (from clone DKFZp761H172). JD100824 - Sequence 81848 from Patent EP1572962. JD057339 - Sequence 38363 from Patent EP1572962. JD111659 - Sequence 92683 from Patent EP1572962. JD100268 - Sequence 81292 from Patent EP1572962. JD056811 - Sequence 37835 from Patent EP1572962. JD508079 - Sequence 489103 from Patent EP1572962. JD329759 - Sequence 310783 from Patent EP1572962. JD329759 - Sequence 310783 from Patent EP1572962. JD329759 - Sequence 310783 from Patent EP1572962.

Other Names for This Gene


	Alternate Gene Symbols: A0A804HKG3, A0A804HKG3_HUMAN, BANP , NM_001386991, uc330kog.1, uc330kog.2 UCSC ID: ENST00000682872.1_5 RefSeq Accession: NM_001386991.1

Gene Model Information


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Methods, Credits, and Use Restrictions


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