Human Gene ANGPTL4 (ENST00000301455.7_4) from GENCODE V47lift37
  Description: angiopoietin like 4, transcript variant 1 (from RefSeq NM_139314.3)
Gencode Transcript: ENST00000301455.7_4
Gencode Gene: ENSG00000167772.12_10
Transcript (Including UTRs)
   Position: hg19 chr19:8,429,039-8,439,254 Size: 10,216 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr19:8,429,206-8,438,770 Size: 9,565 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:8,429,039-8,439,254)mRNA (may differ from genome)Protein (406 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ANGL4_HUMAN
DESCRIPTION: RecName: Full=Angiopoietin-related protein 4; AltName: Full=Angiopoietin-like protein 4; AltName: Full=Hepatic fibrinogen/angiopoietin-related protein; Short=HFARP; Flags: Precursor;
FUNCTION: Protein with hypoxia-induced expression in endothelial cells. May act as a regulator of angiogenesis and modulate tumorigenesis. Inhibits proliferation, migration, and tubule formation of endothelial cells and reduces vascular leakage. May exert a protective function on endothelial cells through an endocrine action. It is directly involved in regulating glucose homeostasis, lipid metabolism, and insulin sensitivity. In response to hypoxia, the unprocessed form of the protein accumulates in the subendothelial extracellular matrix (ECM). The matrix-associated and immobilized unprocessed form limits the formation of actin stress fibers and focal contacts in the adhering endothelial cells and inhibits their adhesion. It also decreases motility of endothelial cells and inhibits the sprouting and tube formation (By similarity).
SUBUNIT: Homooligomer. The homooligomer undergoes proteolytic processing to release its carboxyl fibrinogen-like domain, which circulates as a monomer. The homooligomer unprocessed form is able to interact with the extracellular matrix (By similarity).
INTERACTION: P05556:ITGB1; NbExp=2; IntAct=EBI-2968146, EBI-703066; P18084:ITGB5; NbExp=3; IntAct=EBI-2968146, EBI-1223434;
SUBCELLULAR LOCATION: Secreted. Secreted, extracellular space, extracellular matrix (By similarity). Note=The unprocessed form interacts with the extracellular matrix. This may constitute a dynamic reservoir, a regulatory mechanism of the bioavailability of ANGPTL4 (By similarity).
TISSUE SPECIFICITY: Expressed at high levels in the placenta, heart, liver, muscle, pancreas and lung but expressed poorly in the brain and kidney.
PTM: N-glycosylated.
SIMILARITY: Contains 1 fibrinogen C-terminal domain.
SEQUENCE CAUTION: Sequence=AAQ88642.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ANGPTL4
Diseases sorted by gene-association score: plasma triglyceride level qtl, low* (500), obesity (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 91.77 RPKM in Adipose - Subcutaneous
Total median expression: 729.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -45.40167-0.272 Picture PostScript Text
3' UTR -211.90484-0.438 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002181 - Fibrinogen_a/b/g_C
IPR014716 - Fibrinogen_a/b/g_C_1
IPR014715 - Fibrinogen_a/b/g_C_2
IPR020837 - Fibrinogen_CS

Pfam Domains:
PF00147 - Fibrinogen beta and gamma chains, C-terminal globular domain

SCOP Domains:
56496 - Fibrinogen C-terminal domain-like

ModBase Predicted Comparative 3D Structure on Q9BY76
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004857 enzyme inhibitor activity
GO:0005515 protein binding
GO:0042802 identical protein binding

Biological Process:
GO:0001525 angiogenesis
GO:0001666 response to hypoxia
GO:0007275 multicellular organism development
GO:0019216 regulation of lipid metabolic process
GO:0030154 cell differentiation
GO:0043066 negative regulation of apoptotic process
GO:0045766 positive regulation of angiogenesis
GO:0051005 negative regulation of lipoprotein lipase activity
GO:0051260 protein homooligomerization
GO:0070328 triglyceride homeostasis
GO:2000352 negative regulation of endothelial cell apoptotic process

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0072562 blood microparticle


-  Descriptions from all associated GenBank mRNAs
  HQ447738 - Synthetic construct Homo sapiens clone IMAGE:100071069; CCSB012586_02 angiopoietin-like 4 (ANGPTL4) gene, encodes complete protein.
KJ898833 - Synthetic construct Homo sapiens clone ccsbBroadEn_08227 ANGPTL4 gene, encodes complete protein.
KR711161 - Synthetic construct Homo sapiens clone CCSBHm_00020908 ANGPTL4 (ANGPTL4) mRNA, encodes complete protein.
KR711162 - Synthetic construct Homo sapiens clone CCSBHm_00020909 ANGPTL4 (ANGPTL4) mRNA, encodes complete protein.
KR711163 - Synthetic construct Homo sapiens clone CCSBHm_00020910 ANGPTL4 (ANGPTL4) mRNA, encodes complete protein.
KR711164 - Synthetic construct Homo sapiens clone CCSBHm_00020914 ANGPTL4 (ANGPTL4) mRNA, encodes complete protein.
LQ882866 - Sequence 15 from Patent WO2018160841.
AB056477 - Homo sapiens ARP4 mRNA for angiopoietin-related protein 4, complete cds.
AK222489 - Homo sapiens mRNA for angiopoietin-like 4 protein variant, clone: adKA03043.
AF202636 - Homo sapiens angiopoietin-like protein PP1158 mRNA, complete cds.
AK303269 - Homo sapiens cDNA FLJ55377 complete cds, highly similar to Angiopoietin-related protein 4 precursor.
AK222524 - Homo sapiens mRNA for angiopoietin-like 4 protein variant, clone: adSH01420.
AY358275 - Homo sapiens clone DNA22780 NL2 (UNQ171) mRNA, complete cds.
AF153606 - Homo sapiens angiopoietin-related protein mRNA, complete cds.
BC023647 - Homo sapiens angiopoietin-like 4, mRNA (cDNA clone MGC:29488 IMAGE:5088323), complete cds.
AF169312 - Homo sapiens hepatic angiopoietin-related protein (ANGPTL2) mRNA, complete cds.
CU692818 - Synthetic construct Homo sapiens gateway clone IMAGE:100021936 5' read ANGPTL4 mRNA.
JD355455 - Sequence 336479 from Patent EP1572962.
JD070359 - Sequence 51383 from Patent EP1572962.
JD520995 - Sequence 502019 from Patent EP1572962.
JD154175 - Sequence 135199 from Patent EP1572962.
JD209681 - Sequence 190705 from Patent EP1572962.
JD166066 - Sequence 147090 from Patent EP1572962.
JD196662 - Sequence 177686 from Patent EP1572962.
JD351505 - Sequence 332529 from Patent EP1572962.
JD483564 - Sequence 464588 from Patent EP1572962.
JD559485 - Sequence 540509 from Patent EP1572962.
JD455536 - Sequence 436560 from Patent EP1572962.
JD383316 - Sequence 364340 from Patent EP1572962.
JD192343 - Sequence 173367 from Patent EP1572962.
JD444155 - Sequence 425179 from Patent EP1572962.
MP584516 - Sequence 15 from Patent WO2020081767.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BY76 (Reactome details) participates in the following event(s):

R-HSA-381340 Transcriptional regulation of white adipocyte differentiation
R-HSA-1989781 PPARA activates gene expression
R-HSA-1266738 Developmental Biology
R-HSA-400206 Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8MY84, ANGL4_HUMAN, ARP4, B4E089, D6W670, ENST00000301455.1, ENST00000301455.2, ENST00000301455.3, ENST00000301455.4, ENST00000301455.5, ENST00000301455.6, F5H0I2, HFARP, NM_139314, PGAR , PP1158 , PSEC0166, Q53HQ6, Q53HU1, Q6UXN0, Q9BY76, Q9HBV4, Q9NZU4, Q9Y5B3, uc317muv.1, uc317muv.2, UNQ171/PRO197
UCSC ID: ENST00000301455.7_4
RefSeq Accession: NM_139314.3
Protein: Q9BY76 (aka ANGL4_HUMAN or ANL4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.