Human Gene AKAP6 (ENST00000280979.9_9) from GENCODE V47lift37
  Description: A-kinase anchoring protein 6 (from RefSeq NM_004274.5)
Gencode Transcript: ENST00000280979.9_9
Gencode Gene: ENSG00000151320.11_12
Transcript (Including UTRs)
   Position: hg19 chr14:32,798,504-33,306,890 Size: 508,387 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr14:32,902,700-33,293,979 Size: 391,280 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:32,798,504-33,306,890)mRNA (may differ from genome)Protein (2319 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AKAP6_HUMAN
DESCRIPTION: RecName: Full=A-kinase anchor protein 6; Short=AKAP-6; AltName: Full=A-kinase anchor protein 100 kDa; Short=AKAP 100; AltName: Full=Protein kinase A-anchoring protein 6; Short=PRKA6; AltName: Full=mAKAP;
FUNCTION: Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the nuclear membrane or sarcoplasmic reticulum. May act as an adapter for assembling multiprotein complexes.
SUBUNIT: Interacts with RII subunit of PKA, phosphatase 2B (calcineurin) and AKAP79.
INTERACTION: Q96CV9:OPTN; NbExp=2; IntAct=EBI-1056102, EBI-748974;
SUBCELLULAR LOCATION: Sarcoplasmic reticulum. Nucleus membrane. Note=In heart muscle. Participation of multiple targeting signals allow correct intracellular targeting. These may be repeated motifs rich in basic and hydrophobic amino acids, palmitoylated/myristoylated motifs or alternatively splice targeting sequences.
TISSUE SPECIFICITY: Highly expressed in cardiac and skeletal muscle, followed by brain.
DOMAIN: RII-alpha binding site, predicted to form an amphipathic helix, could participate in protein-protein interactions with a complementary surface on the R-subunit dimer.
SIMILARITY: Contains 2 spectrin repeats.
SEQUENCE CAUTION: Sequence=BAA20770.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.07 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 173.21 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -41.00145-0.283 Picture PostScript Text
3' UTR -1835.607879-0.233 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026696 - AKAP6/CEP68
IPR018159 - Spectrin/alpha-actinin
IPR002017 - Spectrin_repeat

SCOP Domains:
46966 - Spectrin repeat
90250 - Troponin coil-coiled subunits

ModBase Predicted Comparative 3D Structure on Q13023
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008179 adenylate cyclase binding
GO:0032947 protein complex scaffold
GO:0034237 protein kinase A regulatory subunit binding
GO:0043495 protein anchor
GO:0044325 ion channel binding
GO:0051018 protein kinase A binding

Biological Process:
GO:0001508 action potential
GO:0006605 protein targeting
GO:0010738 regulation of protein kinase A signaling
GO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0019933 cAMP-mediated signaling
GO:0030307 positive regulation of cell growth
GO:0032516 positive regulation of phosphoprotein phosphatase activity
GO:0035556 intracellular signal transduction
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol
GO:0060306 regulation of membrane repolarization
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity
GO:0061051 positive regulation of cell growth involved in cardiac muscle cell development
GO:0070886 positive regulation of calcineurin-NFAT signaling cascade
GO:0071320 cellular response to cAMP
GO:0071345 cellular response to cytokine stimulus
GO:1901381 positive regulation of potassium ion transmembrane transport
GO:1902261 positive regulation of delayed rectifier potassium channel activity

Cellular Component:
GO:0005634 nucleus
GO:0005635 nuclear envelope
GO:0005737 cytoplasm
GO:0005901 caveola
GO:0014701 junctional sarcoplasmic reticulum membrane
GO:0014704 intercalated disc
GO:0016020 membrane
GO:0016529 sarcoplasmic reticulum
GO:0030315 T-tubule
GO:0031965 nuclear membrane
GO:0034704 calcium channel complex
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  U17195 - Homo sapiens A-kinase anchor protein (AKAP100) mRNA, complete cds.
AB002309 - Homo sapiens mRNA for KIAA0311 gene.
BC150288 - Homo sapiens A kinase (PRKA) anchor protein 6, mRNA (cDNA clone MGC:166924 IMAGE:8860126), complete cds.
BC150185 - Homo sapiens A kinase (PRKA) anchor protein 6, mRNA (cDNA clone IMAGE:40148309), complete cds.
BC154413 - Homo sapiens A kinase (PRKA) anchor protein 6, mRNA (cDNA clone IMAGE:40148750), complete cds.
BC137233 - Homo sapiens A kinase (PRKA) anchor protein 6, mRNA (cDNA clone MGC:168853 IMAGE:9021230), complete cds.
BC137232 - Homo sapiens A kinase (PRKA) anchor protein 6, mRNA (cDNA clone MGC:168852 IMAGE:9021229), complete cds.
AB385306 - Synthetic construct DNA, clone: pF1KA0311, Homo sapiens AKAP6 gene for A-kinase anchor protein 6, complete cds, without stop codon, in Flexi system.
AK094160 - Homo sapiens cDNA FLJ36841 fis, clone ASTRO2011834, highly similar to A kinase (PRKA) anchor protein 6.
JD533922 - Sequence 514946 from Patent EP1572962.
JD253982 - Sequence 235006 from Patent EP1572962.
JD465683 - Sequence 446707 from Patent EP1572962.
JD273750 - Sequence 254774 from Patent EP1572962.
JD358116 - Sequence 339140 from Patent EP1572962.
JD120970 - Sequence 101994 from Patent EP1572962.
JD197024 - Sequence 178048 from Patent EP1572962.
JD322165 - Sequence 303189 from Patent EP1572962.
JD095164 - Sequence 76188 from Patent EP1572962.
JD262909 - Sequence 243933 from Patent EP1572962.
JD460364 - Sequence 441388 from Patent EP1572962.
JD334061 - Sequence 315085 from Patent EP1572962.
JD100843 - Sequence 81867 from Patent EP1572962.
JD471121 - Sequence 452145 from Patent EP1572962.
JD509800 - Sequence 490824 from Patent EP1572962.
JD509193 - Sequence 490217 from Patent EP1572962.
JD237690 - Sequence 218714 from Patent EP1572962.
JD357380 - Sequence 338404 from Patent EP1572962.
JD268976 - Sequence 250000 from Patent EP1572962.
JD357719 - Sequence 338743 from Patent EP1572962.
JD557852 - Sequence 538876 from Patent EP1572962.
JD552228 - Sequence 533252 from Patent EP1572962.
JD249496 - Sequence 230520 from Patent EP1572962.
JD349555 - Sequence 330579 from Patent EP1572962.
JD049695 - Sequence 30719 from Patent EP1572962.
JD139460 - Sequence 120484 from Patent EP1572962.
JD109373 - Sequence 90397 from Patent EP1572962.
JD315375 - Sequence 296399 from Patent EP1572962.
JD447462 - Sequence 428486 from Patent EP1572962.
JD509713 - Sequence 490737 from Patent EP1572962.
JD557247 - Sequence 538271 from Patent EP1572962.
JD243903 - Sequence 224927 from Patent EP1572962.
JD328180 - Sequence 309204 from Patent EP1572962.
JD302917 - Sequence 283941 from Patent EP1572962.
JD205496 - Sequence 186520 from Patent EP1572962.
JD244116 - Sequence 225140 from Patent EP1572962.
JD113039 - Sequence 94063 from Patent EP1572962.
JD370209 - Sequence 351233 from Patent EP1572962.
JD481261 - Sequence 462285 from Patent EP1572962.
JD027862 - Sequence 8886 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A7E242, A7E2D4, AKAP100, AKAP6_HUMAN, ENST00000280979.1, ENST00000280979.2, ENST00000280979.3, ENST00000280979.4, ENST00000280979.5, ENST00000280979.6, ENST00000280979.7, ENST00000280979.8, KIAA0311, NM_004274, O15028, Q13023, uc317jve.1, uc317jve.2
UCSC ID: ENST00000280979.9_9
RefSeq Accession: NM_004274.5
Protein: Q13023 (aka AKAP6_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.