Human Gene AKAP5 (ENST00000394718.4_4) from GENCODE V47lift37
  Description: A-kinase anchoring protein 5 (from RefSeq NM_004857.3)
Gencode Transcript: ENST00000394718.4_4
Gencode Gene: ENSG00000179841.8_7
Transcript (Including UTRs)
   Position: hg19 chr14:64,932,217-64,941,221 Size: 9,005 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr14:64,935,113-64,936,396 Size: 1,284 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:64,932,217-64,941,221)mRNA (may differ from genome)Protein (427 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AKAP5_HUMAN
DESCRIPTION: RecName: Full=A-kinase anchor protein 5; Short=AKAP-5; AltName: Full=A-kinase anchor protein 79 kDa; Short=AKAP 79; AltName: Full=H21; AltName: Full=cAMP-dependent protein kinase regulatory subunit II high affinity-binding protein;
FUNCTION: May anchor the PKA protein to cytoskeletal and/or organelle-associated proteins, targeting the signal carried by cAMP to specific intracellular effectors. Association with to the beta2-adrenergic receptor (beta2-AR) not only regulates beta2-AR signaling pathway, but also the activation by PKA by switching off the beta2-AR signaling cascade.
SUBUNIT: Binding protein for dimer of the RII-beta regulatory subunit of cAMP-dependent protein kinase (PKA) and also for the protein kinase C (PKC) and the phosphatase calcineurin (PP2B). Each enzyme is inhibited when bound to the anchoring protein. Also binds the beta2-adrenergic receptor. Part of a complex containing AKAP5, ADCY5, ADCY6 AND PDE4C (By similarity). Interacts with ADCY8, and enhances its phosphorylation at lipid rafts.
INTERACTION: P35561:Kcnj2 (xeno); NbExp=2; IntAct=EBI-703640, EBI-703793;
SUBCELLULAR LOCATION: Membrane; Lipid-anchor. Note=Associates with lipid rafts.
TISSUE SPECIFICITY: Predominantly in the cerebral cortex and the postsynaptic densities of the forebrain, and to a lesser extent in adrenal medulla, lung and anterior pituitary.
DOMAIN: RII-alpha binding site, predicted to form an amphipathic helix, could participate in protein-protein interactions with a complementary surface on the R-subunit dimer.
DOMAIN: The N-terminal region, which is highly basic, is required for interaction with calmodulin.
PTM: Palmitoylation at Cys-36 and Cys-129 plays a key role in targeting to lipid rafts.
SIMILARITY: Contains 1 AKAP domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: AKAP5
Diseases sorted by gene-association score: corneal ectasia (8), ureterolithiasis (7), canavan disease (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.00 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 58.17 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -109.50378-0.290 Picture PostScript Text
3' UTR -1476.104825-0.306 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001573 - Pkinase-A_anch_WSK-motif

Pfam Domains:
PF03832 - WSK motif

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2H9R - NMR 3LL8 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P24588
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0008179 adenylate cyclase binding
GO:0017124 SH3 domain binding
GO:0030346 protein phosphatase 2B binding
GO:0034237 protein kinase A regulatory subunit binding
GO:0035254 glutamate receptor binding
GO:0051018 protein kinase A binding
GO:0097110 scaffold protein binding

Biological Process:
GO:0006605 protein targeting
GO:0007165 signal transduction
GO:0007193 adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway
GO:0007268 chemical synaptic transmission
GO:0010738 regulation of protein kinase A signaling
GO:1903078 positive regulation of protein localization to plasma membrane

Cellular Component:
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0009898 cytoplasmic side of plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  AK315336 - Homo sapiens cDNA, FLJ96377, Homo sapiens A kinase (PRKA) anchor protein 5 (AKAP5), mRNA.
BC057229 - Homo sapiens A kinase (PRKA) anchor protein 5, mRNA (cDNA clone IMAGE:5810750), partial cds.
M90359 - Human cAMP-dpendent protein kinase (AKAP 79) mRNA, complete cds.
BC131516 - Homo sapiens A kinase (PRKA) anchor protein 5, mRNA (cDNA clone MGC:138888 IMAGE:40084320), complete cds.
JD433235 - Sequence 414259 from Patent EP1572962.
JD295662 - Sequence 276686 from Patent EP1572962.
KJ898035 - Synthetic construct Homo sapiens clone ccsbBroadEn_07429 AKAP5 gene, encodes complete protein.
JD049987 - Sequence 31011 from Patent EP1572962.
JD556420 - Sequence 537444 from Patent EP1572962.
JD522354 - Sequence 503378 from Patent EP1572962.
JD319520 - Sequence 300544 from Patent EP1572962.
JD105740 - Sequence 86764 from Patent EP1572962.
JD159104 - Sequence 140128 from Patent EP1572962.
JD275818 - Sequence 256842 from Patent EP1572962.
JD278369 - Sequence 259393 from Patent EP1572962.
JD036338 - Sequence 17362 from Patent EP1572962.
JD283439 - Sequence 264463 from Patent EP1572962.
JD283438 - Sequence 264462 from Patent EP1572962.
JD165719 - Sequence 146743 from Patent EP1572962.
JD351848 - Sequence 332872 from Patent EP1572962.
JD430267 - Sequence 411291 from Patent EP1572962.
AK124004 - Homo sapiens cDNA FLJ42010 fis, clone SPLEN2032036.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P24588 (Reactome details) participates in the following event(s):

R-HSA-9010647 ROBO3.1 binds AKAP5
R-HSA-9010648 ROBO2 binds AKAP5
R-HSA-416320 Trafficking of GluR1-containing AMPA receptors
R-HSA-381707 PKA:AKAP79:IQGAP1 complex dissociates to active PKA subunits in response to cAMP
R-HSA-9010641 AKAP5 recruits PKA to ROBO2
R-HSA-9010643 AKAP5 recruits PKC to ROBO2
R-HSA-9010645 AKAP5 recruits PPP3CB (PP2BB) to ROBO2
R-HSA-9010646 AKAP5 recruits PKC to ROBO3.1
R-HSA-9010681 PKC phosphorylates ROBO3.1
R-HSA-9010642 ROBO receptors bind AKAP5
R-HSA-399719 Trafficking of AMPA receptors
R-HSA-381676 Glucagon-like Peptide-1 (GLP1) regulates insulin secretion
R-HSA-376176 Signaling by ROBO receptors
R-HSA-399721 Glutamate binding, activation of AMPA receptors and synaptic plasticity
R-HSA-422356 Regulation of insulin secretion
R-HSA-422475 Axon guidance
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-163685 Energy Metabolism
R-HSA-1266738 Developmental Biology
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-1430728 Metabolism
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: A2RRB8, AKAP5_HUMAN, AKAP79, ENST00000394718.1, ENST00000394718.2, ENST00000394718.3, NM_004857, P24588, uc318wvx.1, uc318wvx.2
UCSC ID: ENST00000394718.4_4
RefSeq Accession: NM_004857.3
Protein: P24588 (aka AKAP5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.