Human Gene ADH6 (ENST00000394899.6_8) from GENCODE V47lift37
  Description: alcohol dehydrogenase 6 (class V), transcript variant 1 (from RefSeq NM_001102470.2)
Gencode Transcript: ENST00000394899.6_8
Gencode Gene: ENSG00000172955.17_18
Transcript (Including UTRs)
   Position: hg19 chr4:100,123,796-100,140,403 Size: 16,608 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr4:100,125,376-100,140,309 Size: 14,934 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:100,123,796-100,140,403)mRNA (may differ from genome)Protein (375 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ADH6_HUMAN
DESCRIPTION: RecName: Full=Alcohol dehydrogenase 6; EC=1.1.1.1;
CATALYTIC ACTIVITY: An alcohol + NAD(+) = an aldehyde or ketone + NADH.
COFACTOR: Binds 2 zinc ions per subunit (By similarity).
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Stomach and liver.
MISCELLANEOUS: There are 7 different ADH's isozymes in human: three belongs to class-I: alpha, beta, and gamma, one to class-II: pi, one to class-III: chi, one to class-IV: ADH7 and one to class- V: ADH6.
SIMILARITY: Belongs to the zinc-containing alcohol dehydrogenase family. Class-V subfamily.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/adh6/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ADH6
Diseases sorted by gene-association score: fetal alcohol spectrum disorder (4), alcohol dependence (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 50.36 RPKM in Liver
Total median expression: 66.54 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.0094-0.191 Picture PostScript Text
3' UTR -424.801580-0.269 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013149 - ADH_C
IPR013154 - ADH_GroES-like
IPR002085 - ADH_SF_Zn-type
IPR002328 - ADH_Zn_CS
IPR011032 - GroES-like
IPR016040 - NAD(P)-bd_dom

Pfam Domains:
PF00107 - Zinc-binding dehydrogenase
PF08240 - Alcohol dehydrogenase GroES-like domain

SCOP Domains:
50129 - GroES-like
51735 - NAD(P)-binding Rossmann-fold domains
51984 - MurCD N-terminal domain
53335 - S-adenosyl-L-methionine-dependent methyltransferases

ModBase Predicted Comparative 3D Structure on P28332
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
 Gene Details    
 Gene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004022 alcohol dehydrogenase (NAD) activity
GO:0004024 alcohol dehydrogenase activity, zinc-dependent
GO:0008270 zinc ion binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006069 ethanol oxidation
GO:0045471 response to ethanol
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC039065 - Homo sapiens alcohol dehydrogenase 6 (class V), mRNA (cDNA clone MGC:34228 IMAGE:5184104), complete cds.
AK092768 - Homo sapiens cDNA FLJ35449 fis, clone SMINT2004144, highly similar to ALCOHOL DEHYDROGENASE 6 (EC 1.1.1.1).
AK316326 - Homo sapiens cDNA, FLJ79225 complete cds, highly similar to Alcohol dehydrogenase 6 (EC 1.1.1.1).
AJ278908 - Homo sapiens partial mRNA for class V alcohol dehydrogenase 5 (ADH5 gene).
JD387480 - Sequence 368504 from Patent EP1572962.
JD162635 - Sequence 143659 from Patent EP1572962.
AK298290 - Homo sapiens cDNA FLJ56923 complete cds, highly similar to Alcohol dehydrogenase 6 (EC 1.1.1.1).
KJ901277 - Synthetic construct Homo sapiens clone ccsbBroadEn_10671 ADH6 gene, encodes complete protein.
JD403840 - Sequence 384864 from Patent EP1572962.
JD127278 - Sequence 108302 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-6313 - serotonin degradation
PWY-6342 - noradrenaline and adrenaline degradation
PWY66-401 - superpathway of L-tryptophan utilization

Reactome (by CSHL, EBI, and GO)

Protein P28332 (Reactome details) participates in the following event(s):

R-HSA-71707 ethanol + NAD+ => acetaldehyde + NADH + H+
R-HSA-71384 Ethanol oxidation
R-HSA-211945 Phase I - Functionalization of compounds
R-HSA-211859 Biological oxidations
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0A0MS56, ADH6_HUMAN, B3KS45, ENST00000394899.1, ENST00000394899.2, ENST00000394899.3, ENST00000394899.4, ENST00000394899.5, NM_001102470, P28332, Q58F53, uc318wzt.1, uc318wzt.2
UCSC ID: ENST00000394899.6_8
RefSeq Accession: NM_001102470.2
Protein: P28332 (aka ADH6_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.