The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on Q6IRT1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Molecular Function: GO:0004022 alcohol dehydrogenase (NAD) activity GO:0008270 zinc ion binding GO:0016491 oxidoreductase activity GO:0042803 protein homodimerization activity GO:0046872 metal ion binding GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity
Biological Process: GO:0001523 retinoid metabolic process GO:0003016 respiratory system process GO:0006069 ethanol oxidation GO:0018119 peptidyl-cysteine S-nitrosylation GO:0032496 response to lipopolysaccharide GO:0045777 positive regulation of blood pressure GO:0046294 formaldehyde catabolic process GO:0051409 response to nitrosative stress GO:0055114 oxidation-reduction process
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Sequence and Links to Tools and Databases 
Common Gene Haplotype Alleles 
