Human Gene ACAD8 (ENST00000281182.9_4) from GENCODE V47lift37
  Description: acyl-CoA dehydrogenase family member 8 (from RefSeq NM_014384.3)
Gencode Transcript: ENST00000281182.9_4
Gencode Gene: ENSG00000151498.12_5
Transcript (Including UTRs)
   Position: hg19 chr11:134,123,462-134,135,749 Size: 12,288 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr11:134,123,495-134,134,854 Size: 11,360 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:134,123,462-134,135,749)mRNA (may differ from genome)Protein (415 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACAD8_HUMAN
DESCRIPTION: RecName: Full=Isobutyryl-CoA dehydrogenase, mitochondrial; EC=1.3.99.-; AltName: Full=Activator-recruited cofactor 42 kDa component; Short=ARC42; AltName: Full=Acyl-CoA dehydrogenase family member 8; Short=ACAD-8; Flags: Precursor;
FUNCTION: Has very high activity toward isobutyryl-CoA. Is an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Plays a role in transcriptional coactivation within the ARC complex.
CATALYTIC ACTIVITY: Isobutyryl-CoA + ETF = methylacrylyl-CoA + reduced ETF.
COFACTOR: FAD.
PATHWAY: Amino-acid degradation; L-valine degradation.
SUBUNIT: Homotetramer, formed by a dimer of dimers. Subunit of the large multiprotein complex ARC/DRIP.
SUBCELLULAR LOCATION: Mitochondrion.
TISSUE SPECIFICITY: Detected at comparable levels in all tissues examined (heart, lung, brain, skeletal muscle, pancreas and placenta). Weakly expressed in liver and kidney.
DISEASE: Defects in ACAD8 are the cause of isobutyryl-CoA dehydrogenase deficiency (IBDD) [MIM:611283]. The symptoms of IBDD generally appear until late in infancy or in childhood and can include poor feeding and growth (failure to thrive), a weakened and enlarged heart (dilated cardiomyopathy), seizures, and low numbers of red blood cells (anemia).
SIMILARITY: Belongs to the acyl-CoA dehydrogenase family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ACAD8";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACAD8
Diseases sorted by gene-association score: isobutyryl-coa dehydrogenase deficiency* (1703), 2-methylbutyrylglycinuria (13), acyl-coa dehydrogenase, short-chain, deficiency of (10), alpha-methylacetoacetic aciduria (8), 3-methylcrotonyl-coa carboxylase deficiency (7), acyl-coa dehydrogenase, medium chain, deficiency of (6), isovaleric acidemia (6), propionicacidemia (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.87 RPKM in Thyroid
Total median expression: 480.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.7033-0.294 Picture PostScript Text
3' UTR -258.10895-0.288 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006089 - Acyl-CoA_DH_CS
IPR006092 - Acyl-CoA_DH_N
IPR006090 - Acyl-CoA_Oxase/DH_1
IPR006091 - Acyl-CoA_Oxase/DH_cen-dom
IPR009075 - AcylCo_DH/oxidase_C
IPR013786 - AcylCoA_DH/ox_N
IPR009100 - AcylCoA_DH/oxidase

Pfam Domains:
PF00441 - Acyl-CoA dehydrogenase, C-terminal domain
PF02770 - Acyl-CoA dehydrogenase, middle domain
PF02771 - Acyl-CoA dehydrogenase, N-terminal domain
PF08028 - Acyl-CoA dehydrogenase, C-terminal domain

SCOP Domains:
47203 - Acyl-CoA dehydrogenase C-terminal domain-like
56645 - Acyl-CoA dehydrogenase NM domain-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1RX0 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9UKU7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003995 acyl-CoA dehydrogenase activity
GO:0016491 oxidoreductase activity
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660 flavin adenine dinucleotide binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006574 valine catabolic process
GO:0006629 lipid metabolic process
GO:0009083 branched-chain amino acid catabolic process
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix


-  Descriptions from all associated GenBank mRNAs
  AF126245 - Homo sapiens acyl-Coenzyme A dehydrogenase-8 precursor, mRNA, complete cds.
AK309838 - Homo sapiens cDNA, FLJ99879.
LF384534 - JP 2014500723-A/192037: Polycomb-Associated Non-Coding RNAs.
AK299492 - Homo sapiens cDNA FLJ55244 complete cds, highly similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (EC 1.3.99.-).
AK301921 - Homo sapiens cDNA FLJ59096 complete cds, highly similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (EC 1.3.99.-).
AK299795 - Homo sapiens cDNA FLJ59971 complete cds, highly similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (EC 1.3.99.-).
AK074640 - Homo sapiens cDNA FLJ90159 fis, clone HEMBB1002465, weakly similar to ACYL-COA DEHYDROGENASE (EC 1.3.99.-).
AK315980 - Homo sapiens cDNA, FLJ78879 complete cds, highly similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (EC 1.3.99.-).
AK000359 - Homo sapiens cDNA FLJ20352 fis, clone HEP14524.
AK125373 - Homo sapiens cDNA FLJ43383 fis, clone OCBBF2006058, highly similar to Homo sapiens acyl-Coenzyme A dehydrogenase-8 precursor mRNA.
BC001964 - Homo sapiens acyl-Coenzyme A dehydrogenase family, member 8, mRNA (cDNA clone MGC:4966 IMAGE:3462406), complete cds.
AK303569 - Homo sapiens cDNA FLJ55016 complete cds, highly similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (EC 1.3.99.-).
AK309051 - Homo sapiens cDNA, FLJ99092.
CU674960 - Synthetic construct Homo sapiens gateway clone IMAGE:100017212 5' read ACAD8 mRNA.
DQ891093 - Synthetic construct clone IMAGE:100003723; FLH169282.01X; RZPDo839A0796D acyl-Coenzyme A dehydrogenase family, member 8 (ACAD8) gene, encodes complete protein.
DQ894275 - Synthetic construct Homo sapiens clone IMAGE:100008735; FLH169278.01L; RZPDo839A0795D acyl-Coenzyme A dehydrogenase family, member 8 (ACAD8) gene, encodes complete protein.
AB209538 - Homo sapiens mRNA for acyl-Coenzyme A dehydrogenase family, member 8 variant protein.
LF375884 - JP 2014500723-A/183387: Polycomb-Associated Non-Coding RNAs.
AK301518 - Homo sapiens cDNA FLJ54819 complete cds, highly similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (EC 1.3.99.-).
LF375883 - JP 2014500723-A/183386: Polycomb-Associated Non-Coding RNAs.
LF375882 - JP 2014500723-A/183385: Polycomb-Associated Non-Coding RNAs.
AK026243 - Homo sapiens cDNA: FLJ22590 fis, clone HSI03096, highly similar to AF126245 Homo sapiens acyl-Coenzyme A dehydrogenase-8 precursor mRNA.
LF375881 - JP 2014500723-A/183384: Polycomb-Associated Non-Coding RNAs.
AK124235 - Homo sapiens cDNA FLJ42241 fis, clone TKIDN2003413.
JD274290 - Sequence 255314 from Patent EP1572962.
JD171570 - Sequence 152594 from Patent EP1572962.
JD282932 - Sequence 263956 from Patent EP1572962.
JD048994 - Sequence 30018 from Patent EP1572962.
JD398996 - Sequence 380020 from Patent EP1572962.
JD151271 - Sequence 132295 from Patent EP1572962.
JD369495 - Sequence 350519 from Patent EP1572962.
JD313912 - Sequence 294936 from Patent EP1572962.
LF375879 - JP 2014500723-A/183382: Polycomb-Associated Non-Coding RNAs.
MA620111 - JP 2018138019-A/192037: Polycomb-Associated Non-Coding RNAs.
MA611461 - JP 2018138019-A/183387: Polycomb-Associated Non-Coding RNAs.
MA611460 - JP 2018138019-A/183386: Polycomb-Associated Non-Coding RNAs.
MA611459 - JP 2018138019-A/183385: Polycomb-Associated Non-Coding RNAs.
MA611458 - JP 2018138019-A/183384: Polycomb-Associated Non-Coding RNAs.
MA611456 - JP 2018138019-A/183382: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
VALDEG-PWY - L-valine degradation

Reactome (by CSHL, EBI, and GO)

Protein Q9UKU7 (Reactome details) participates in the following event(s):

R-HSA-70859 isobutyryl-CoA + FAD => methacrylyl-CoA + FADH2
R-HSA-70895 Branched-chain amino acid catabolism
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ACAD8 , ACAD8_HUMAN, ARC42, B7Z5W4, ENST00000281182.1, ENST00000281182.2, ENST00000281182.3, ENST00000281182.4, ENST00000281182.5, ENST00000281182.6, ENST00000281182.7, ENST00000281182.8, IBD, NM_014384, Q6ZWP6, Q9BUS8, Q9UKU7, uc317jvy.1, uc317jvy.2
UCSC ID: ENST00000281182.9_4
RefSeq Accession: NM_014384.3
Protein: Q9UKU7 (aka ACAD8_HUMAN or ACD8_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.