Human Gene ACACA (ENST00000616317.5_9) from GENCODE V47lift37
  Description: acetyl-CoA carboxylase alpha, transcript variant 1 (from RefSeq NM_198834.3)
Gencode Transcript: ENST00000616317.5_9
Gencode Gene: ENSG00000278540.5_14
Transcript (Including UTRs)
   Position: hg19 chr17:35,441,927-35,766,927 Size: 325,001 Total Exon Count: 56 Strand: -
Coding Region
   Position: hg19 chr17:35,444,251-35,766,389 Size: 322,139 Coding Exon Count: 56 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:35,441,927-35,766,927)mRNA (may differ from genome)Protein (2380 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACACA_HUMAN
DESCRIPTION: RecName: Full=Acetyl-CoA carboxylase 1; Short=ACC1; EC=6.4.1.2; AltName: Full=ACC-alpha; Includes: RecName: Full=Biotin carboxylase; EC=6.3.4.14;
FUNCTION: Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase.
CATALYTIC ACTIVITY: ATP + acetyl-CoA + HCO(3)(-) = ADP + phosphate + malonyl-CoA.
CATALYTIC ACTIVITY: ATP + biotin-[carboxyl-carrier-protein] + CO(2) = ADP + phosphate + carboxy-biotin-[carboxyl-carrier- protein].
COFACTOR: Biotin.
COFACTOR: Binds 2 manganese ions per subunit.
ENZYME REGULATION: By phosphorylation (By similarity). Activity is increased by oligomerization. Citrate and MID1IP1 promote oligomerization.
PATHWAY: Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.
SUBUNIT: Monomer, homodimer, and homotetramer. Can form filamentous polymers. Interacts in its inactive phosphorylated form with the BRCT domains of BRCA1 which prevents ACACA dephosphorylation and inhibits lipid synthesis. Interacts with MID1IP1; interaction with MID1IP1 promotes oligomerization and increases its activity.
INTERACTION: O60218:AKR1B10; NbExp=4; IntAct=EBI-717681, EBI-1572139; P38398:BRCA1; NbExp=2; IntAct=EBI-717681, EBI-349905; Q96EB6:SIRT1; NbExp=3; IntAct=EBI-717681, EBI-1802965;
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Expressed in brain, placental, skeletal muscle, renal, pancreatic and adipose tissues; expressed at low level in pulmonary tissue; not detected in the liver.
PTM: Phosphorylation on Ser-1263 is required for interaction with BRCA1.
DISEASE: Defects in ACACA are a cause of acetyl-CoA carboxylase 1 deficiency (ACACAD) [MIM:613933]; also known as ACAC deficiency or ACC deficiency. An inborn error of de novo fatty acid synthesis associated with severe brain damage, persistent myopathy and poor growth.
SIMILARITY: Contains 1 ATP-grasp domain.
SIMILARITY: Contains 1 biotin carboxylation domain.
SIMILARITY: Contains 1 biotinyl-binding domain.
SIMILARITY: Contains 1 carboxyltransferase domain.
SEQUENCE CAUTION: Sequence=AAP94120.1; Type=Erroneous initiation;
WEB RESOURCE: Name=Wikipedia; Note=Acetyl-CoA carboxylase entry; URL="http://en.wikipedia.org/wiki/Acetyl-CoA_carboxylase";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACACA
Diseases sorted by gene-association score: acetyl-coa carboxylase deficiency* (168), multiple carboxylase deficiency (17), biotin deficiency (9), hepatic coma (6), diabetes mellitus, ketosis-prone (5), chromosome 17q12 deletion syndrome (4), obesity (2), diabetes mellitus, noninsulin-dependent (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -226.80538-0.422 Picture PostScript Text
3' UTR -755.302324-0.325 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013537 - AcCoA_COase_cen
IPR011761 - ATP-grasp
IPR013815 - ATP_grasp_subdomain_1
IPR013816 - ATP_grasp_subdomain_2
IPR001882 - Biotin_BS
IPR011764 - Biotin_carboxylation_dom
IPR005482 - Biotin_COase_C
IPR000089 - Biotin_lipoyl
IPR005481 - CarbamoylP_synth_lsu_N
IPR000022 - Carboxyl_trans
IPR005479 - CbamoylP_synth_lsu-like_ATP-bd
IPR011763 - COA_CT_C
IPR011762 - COA_CT_N
IPR016185 - PreATP-grasp_fold
IPR011054 - Rudment_hybrid_motif
IPR011053 - Single_hybrid_motif

Pfam Domains:
PF00289 - Biotin carboxylase, N-terminal domain
PF00364 - Biotin-requiring enzyme
PF01039 - Carboxyl transferase domain
PF02222 - ATP-grasp domain
PF02785 - Biotin carboxylase C-terminal domain
PF02786 - Carbamoyl-phosphate synthase L chain, ATP binding domain
PF07478 - D-ala D-ala ligase C-terminus
PF08326 - Acetyl-CoA carboxylase, central region

SCOP Domains:
48371 - ARM repeat
63491 - BAG domain
51230 - Single hybrid motif
51246 - Rudiment single hybrid motif
52096 - ClpP/crotonase
52440 - PreATP-grasp domain
56059 - Glutathione synthetase ATP-binding domain-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2YL2 - X-ray MuPIT 3COJ - X-ray MuPIT 4ASI - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q13085
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0003989 acetyl-CoA carboxylase activity
GO:0004075 biotin carboxylase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding

Biological Process:
GO:0001894 tissue homeostasis
GO:0006084 acetyl-CoA metabolic process
GO:0006629 lipid metabolic process
GO:0006631 fatty acid metabolic process
GO:0006633 fatty acid biosynthetic process
GO:0006853 carnitine shuttle
GO:0008152 metabolic process
GO:0019538 protein metabolic process
GO:0031325 positive regulation of cellular metabolic process
GO:0045540 regulation of cholesterol biosynthetic process
GO:0046949 fatty-acyl-CoA biosynthetic process
GO:0051289 protein homotetramerization
GO:0055088 lipid homeostasis
GO:0071380 cellular response to prostaglandin E stimulus
GO:2001295 malonyl-CoA biosynthetic process

Cellular Component:
GO:0001650 fibrillar center
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0015629 actin cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  AB371587 - Homo sapiens ACACA mRNA for acetyl-Coenzyme A carboxylase alpha, complete cds, clone: HP08032-ARiS088K16.
BC137287 - Homo sapiens acetyl-Coenzyme A carboxylase alpha, mRNA (cDNA clone MGC:168907 IMAGE:9021284), complete cds.
AY237919 - Homo sapiens acetyl-CoA carboxylase alpha (ACACA) mRNA, complete cds.
U19822 - Human acetyl-CoA carboxylase mRNA, complete cds.
AY315627 - Homo sapiens acetyl-CoA carboxylase 1 (ACC1) mRNA, complete cds; alternatively spliced.
X68968 - H.sapiens mRNA for acetyl-CoA carboxylase.
AK309084 - Homo sapiens cDNA, FLJ99125.
AY315619 - Homo sapiens acetyl-CoA carboxylase 1 (ACC1) mRNA, partial cds; alternatively spliced.
AY315620 - Homo sapiens acetyl-CoA carboxylase 1 (ACC1) mRNA, partial cds; alternatively spliced.
AK308905 - Homo sapiens cDNA, FLJ98946.
AY315621 - Homo sapiens acetyl-CoA carboxylase 1 (ACC1) mRNA, partial cds; alternatively spliced.
AY315622 - Homo sapiens acetyl-CoA carboxylase 1 truncated isoform (ACC1) mRNA, complete cds; alternatively spliced.
AY315623 - Homo sapiens acetyl-CoA carboxylase 1 (ACC1) mRNA, partial cds; alternatively spliced.
AY315625 - Homo sapiens acetyl-CoA carboxylase 1 (ACC1) mRNA, partial cds; alternatively spliced.
AY315626 - Homo sapiens acetyl-CoA carboxylase 1 truncated isoform (ACC1) mRNA, complete cds; alternatively spliced.
AJ534888 - Homo sapiens partial mRNA for acetyl-CoA carboxylase-alpha (ACACA gene), splice variant E5A.
AJ534889 - Homo sapiens partial mRNA for acetyl-CoA carboxylase-alpha (ACACA gene), splice variant E5B.
AB209325 - Homo sapiens mRNA for acetyl-Coenzyme A carboxylase alpha isoform 2 variant protein.
BC041598 - Homo sapiens acetyl-Coenzyme A carboxylase alpha, mRNA (cDNA clone IMAGE:5456560), partial cds.
BC031485 - Homo sapiens acetyl-Coenzyme A carboxylase alpha, mRNA (cDNA clone IMAGE:3874305), partial cds.
AK129523 - Homo sapiens cDNA FLJ26012 fis, clone LVR01120.
BC127828 - Homo sapiens cDNA clone IMAGE:40134002.
AK311329 - Homo sapiens cDNA, FLJ18371.
AK301579 - Homo sapiens cDNA FLJ50718 complete cds, highly similar to Acetyl-CoA carboxylase 1 (EC 6.4.1.2).
AK296368 - Homo sapiens cDNA FLJ54634 complete cds, highly similar to Acetyl-CoA carboxylase 1 (EC 6.4.1.2).
AK295805 - Homo sapiens cDNA FLJ50410 complete cds, highly similar to Acetyl-CoA carboxylase 1 (EC 6.4.1.2).
AK295586 - Homo sapiens cDNA FLJ52591 complete cds, highly similar to Acetyl-CoA carboxylase 1 (EC 6.4.1.2).
AK295735 - Homo sapiens cDNA FLJ52592 complete cds, highly similar to Acetyl-CoA carboxylase 1 (EC 6.4.1.2).
AK309424 - Homo sapiens cDNA, FLJ99465.
DQ578478 - Homo sapiens piRNA piR-46590, complete sequence.
AJ564444 - Homo sapiens partial mRNA for acetyl-CoA carboxylase-alpha (ACACA gene), splice variant PI.
JD466906 - Sequence 447930 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-5966-1 - fatty acid biosynthesis initiation (animals and fungi, cytoplasm)
PWY0-1264 - biotin-carboxyl carrier protein assembly
PWY66-429 - fatty acid biosynthesis initiation (mitochondria)

BioCarta from NCI Cancer Genome Anatomy Project
h_leptinPathway - Reversal of Insulin Resistance by Leptin

Reactome (by CSHL, EBI, and GO)

Protein Q13085 (Reactome details) participates in the following event(s):

R-HSA-2993814 HLCS biotinylates ACACA:Mn2+
R-HSA-200555 acetyl-CoA + bicarbonate + ATP => malonyl-CoA + H2O + ADP + orthophosphate
R-HSA-2426168 Activation of gene expression by SREBF (SREBP)
R-HSA-196780 Biotin transport and metabolism
R-HSA-3371599 Defective HLCS causes multiple carboxylase deficiency
R-HSA-1655829 Regulation of cholesterol biosynthesis by SREBP (SREBF)
R-HSA-163765 ChREBP activates metabolic gene expression
R-HSA-75105 Fatty acyl-CoA biosynthesis
R-HSA-196849 Metabolism of water-soluble vitamins and cofactors
R-HSA-3323169 Defects in biotin (Btn) metabolism
R-HSA-8957322 Metabolism of steroids
R-HSA-163685 Energy Metabolism
R-HSA-8978868 Fatty acid metabolism
R-HSA-196854 Metabolism of vitamins and cofactors
R-HSA-3296482 Defects in vitamin and cofactor metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism
R-HSA-5668914 Diseases of metabolism
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ACAC, ACACA , ACACA_HUMAN, ACC1, ACCA, B2RP68, B2ZZ90, ENST00000616317.1, ENST00000616317.2, ENST00000616317.3, ENST00000616317.4, NM_198834, Q13085, Q6KEV6, Q6XDA8, Q7Z2G8, Q7Z561, Q7Z563, Q7Z564, Q86WB2, Q86WB3, uc327qlc.1, uc327qlc.2
UCSC ID: ENST00000616317.5_9
RefSeq Accession: NM_198834.3
Protein: Q13085 (aka ACACA_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.