Cell, tissue or DNA sample: Cell line or tissue used as the source of experimental material.
cellTierDescriptionLineageTissueKaryotypeSexDocumentsVendor IDTerm IDLabel
8988T 3 pancreas adenocarcinoma (PA-TU-8988T), "established in 1985 from the liver metastasis of a primary pancreatic adenocarcinoma from a 64-year-old woman" - DSMZ endoderm liver cancer F Crawford   DSMZ ACC 162 BTO:0001521 (non-specific) 8988T
A549 2 epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male." - ATCC, newly promoted to tier 2: not in 2011 analysis endoderm epithelium cancer M Myers
Crawford
Stam  		 ATCC CCL-185 BTO:0000018 A549
Adult_CD4_naive 3 CD4+ cells isolated from human blood and enriched for naive populations mesoderm blood normal B Crawford Stam   Dr. David Randolph at University of Alabama, Birmingham Adult_CD4_naive BTO:0000782 T cells CD4+ naive adult
Adult_CD4_Th0 3 CD4+ cells isolated from human blood and enriched for Th0 populations mesoderm blood normal B Crawford   Dr. David Randolph at University of Alabama, Birmingham Adult_CD4_Th0 BTO:0000782 T cells CD4+ Th0 adult
Adult_CD4_Th1 3 CD4+ cells isolated from human blood and enriched for Th1 populations mesoderm blood normal B Crawford Stam   Dr. David Randolph at University of Alabama, Birmingham Adult_CD4_Th1 BTO:0000782 T cells CD4+ Th1 adult
AG04449 3 fetal buttock/thigh fibroblast   skin normal M Stam   Coriell AG04449 BTO:0001253 AG04449
AG04450 3 fetal lung fibroblast endoderm lung normal M Stam   Coriell AG04450 BTO:0000763 AG04450
AG09309 3 adult toe fibroblast from apparently healthy 21 year old, "7% of the cells examined showing random chromosome loss/gain" -Coriell   skin   F Stam   Coriell AG09309 BTO:0001253 AG09309
AG09319 3 gum tissue fibroblasts from apparently heathly 24 year old   gingival normal F Stam   Coriell AG09319 BTO:0004138 AG09319
AG10803 3 abdominal skin fibroblasts from apparently heathly 22 year old, "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell   skin   M Stam   Coriell AG10803 BTO:0001253 AG10803
AoAF 3 aortic adventitial fibroblast cells mesoderm blood vessel normal F Stam   Lonza CC-7014, CC-7014T75 BTO:0000135 AoAF
AoSMC 3 aortic smooth muscle cells mesoderm blood vessel normal U Crawford   Lonza CC-2571 BTO:0001685 AoSMC
BC_Adipose_UHN00001 3 adipose tissue, donor UHN0001, age 35, African American, DNA extract   adipose tissue normal F Myers   BioChain D4234003_A701166 BTO:0001487 Adipose BC UHN00001
BC_Adrenal_Gland_H12803N 3 adrenal gland, donor H12803N, age 88, caucasian, DNA extract ectoderm, mesoderm adrenal gland normal F Myers   BioChain D1234004_B103117 BTO:0000047 Adrenal Gland BC H12803N
BC_Bladder_01-11002 3 urinary bladder, donor 01-11002, age 83, caucasian, DNA extract endoderm urinary bladder normal F Myers   BioChain CP-S12-D1234010-05_B402059 BTO:0001418 Bladder BC 01-11002
BC_Brain_H11058N 3 brain, donor H11058N, age 66, Asian, DNA extract ectoderm brain normal M Myers   BioChain D4234035_A810101 BTO:0000142 Brain BC H11058N
BC_Breast_02-03015 3 breast, donor 02-03015, age 21, caucasian, DNA extract ectoderm breast normal F Myers   BioChain D4234086_A710031 BTO:0000149 Breast BC 02-03015
BC_Colon_01-11002 3 colon, donor 01-11002, age 83, caucasian, DNA and RNA extract endoderm colon normal F Myers   BioChain CP-S12-D1234090-05_A903056
BioChain CP-S10-R1234090-20_B402074		 BTO:0000269 Colon BC 01-11002
BC_Colon_H12817N 3 colon, donor H12817N, age 71, caucasian, DNA and RNA extract endoderm colon normal M Myers   BioChain CP-S13-D1234090-05_B111123
BioChain CP-S10-R1234090-20_B111053		 BTO:0000269 Colon BC H12817N
BC_Esophagus_01-11002 3 esophagus, donor 01-11002, age 83, caucasian, DNA and RNA extract endoderm esophagus normal F Myers   BioChain CP-S12-D1234106-05_A803198
BioChain CP-S10-R1234106-20_B402075		 BTO:0000959 Esophagus BC 01-11002
BC_Esophagus_H12817N 3 esophagus, donor H12817N, age 71, caucasian, DNA extract endoderm esophagus normal M Myers   BioChain CP-S13-D1234106-05_B302113 BTO:0000959 Esophagus BC H12817N
BC_Jejunum_H12817N 3 jejunum, donor H12817N, age 71, caucasian, DNA and RNA extract endoderm jejunum normal M Myers   BioChain CP-S13-D1234230-05_B402068
BioChain CP-S10-R1234230-20_A911037		 BTO:0000657 Jejunum BC H12817N
BC_Kidney_01-11002 3 kidney, donor 01-11002, age 83, caucasian, DNA and RNA extract mesoderm kidney normal F Myers   BioChain CP-S12-D1234142-05_B402060
BioChain CP-S10-R1234142-20_A808055		 BTO:0000671 Kidney BC 01-11002
BC_Kidney_H12817N 3 kidney, donor H12817N, age 71, caucasian, DNA and RNA extract mesoderm kidney normal M Myers   BioChain CP-S13-D1234142-05_B402061
BioChain CP-S10-R1234142-20_B111054		 BTO:0000671 Kidney BC H12817N
BC_Left_Ventricle_N41 3 left ventricle, donor N41, age 26, Asian, DNA extract mesoderm left ventricle normal M Myers   BioChain D1234138_A705026 BTO:0001629 Left Ventricle BC N41
BC_Leukocyte_UHN00204 3 peripheral blood mononuclear cell, donor UHN00204, age 54, caucasian, DNA extract mesoderm blood normal M Myers   BioChain D4234148_A612197 BTO:0001025 Leukocyte BC UHN00204
BC_Liver_01-11002 3 liver, donor 01-11002, age 83, caucasian, DNA and RNA extract endoderm liver normal F Myers   BioChain CP-S12-D1234149-05_B209118
BioChain CP-S10-R1234149-20_B304045		 BTO:0000759 Liver BC 01-11002
BC_Lung_01-11002 3 lung, donor 01-11002, age 83, caucasian, DNA and RNA extract endoderm lung normal F Myers   BioChain CP-S12-D1234152-05_A610240
BioChain CP-S10-R1234152-20_A906114		 BTO:0000763 Lung BC 01-11002
BC_Lung_H12817N 3 lung, donor H12817N, age 71, caucasian, DNA and RNA extract endoderm lung normal M Myers   BioChain CP-S13-D1234152-05_B402062
BioChain CP-S10-R1234152-20_B207133		 BTO:0000763 Lung BC H12817N
BC_Pancreas_H12817N 3 pancreas, donor H12817N, age 71, caucasian, DNA and RNA extract endoderm pancreas normal M Myers   BioChain CP-S13-D1234188-05_B402063
BioChain CP-S10-R1234188-20_B402076		 BTO:0000988 Pancreas BC H12817N
BC_Penis_H12817N 3 penis, donor H12817N, age 71, caucasian, DNA extract mesoderm penis normal M Myers   BioChain CP-S13-D1234194-05_B402064 BTO:0000405 Penis BC H12817N
BC_Pericardium_H12529N 3 pericardium, donor H12529N, age 70, caucasian, DNA extract mesoderm pericardium normal F Myers   BioChain D1234133_A712271 BTO:0000717 Pericardium BC H12529N
BC_Placenta_UHN00189 3 placenta, donor UHN00189, age 29 extraembryonic mesoderm, trophectoderm placenta normal F Myers   BioChain D4234200_A603104 BTO:0001078 Placenta BC UHN00189
BC_Prostate_Gland_H12817N 3 prostate gland, donor H12817N, age 71, caucasian, DNA extract endoderm prostate gland normal M Myers   BioChain CP-D1234201-05_B101058 BTO:0001129 Prostate Gland BC H12817N
BC_Rectum_N29 3 rectum, donor N29, age 29, Asian, DNA extract endoderm rectum normal M Myers   BioChain D4234206_A712205 BTO:0001158 Rectum BC N29
BC_Skeletal_Muscle_01-11002 3 skeletal muscle, donor 01-11002, age 83, caucasian, DNA and RNA extract mesoderm skeletal muscle normal F Myers   BioChain CP-S12-D1234171-05_A610262
BioChain CP-S10-R1234171-20_A808148		 BTO:0001103 Skeletal Muscle BC 01-11002
BC_Skeletal_Muscle_H12817N 3 skeletal muscle, donor H12817N, age 71, caucasian, DNA and RNA extract mesoderm skeletal muscle normal M Myers   BioChain CP-S13-D1234171-05_B402065
BioChain CP-S10-R1234230-20_A911037		 BTO:0001103 Skeletal Muscle BC H12817N
BC_Skin_01-11002 3 skin, donor 01-11002, age 83, caucasian, DNA extract ectoderm, mesoderm skin normal F Myers   BioChain CP-S12-D1234218-05_B402066 BTO:0001253 Skin BC 01-11002
BC_Small_Intestine_01-11002 3 small intestine, donor 01-11002, age 83, caucasian, DNA and RNA extract endoderm small intestine normal F Myers   BioChain CP-S12-D1234226-05_B402067
BioChain CP-S10-R1234226-20_A612138		 BTO:0000651 Small Intestine BC 01-11002
BC_Spleen_H12817N 3 spleen, donor H12817N, age 71, caucasian, DNA and RNA extract mesoderm spleen normal M Myers   BioChain CP-S13-D1234246-05_B402069
BioChain CP-S10-R1234246-20_B304070		 BTO:0001281 Spleen BC H12817N
BC_Stomach_01-11002 3 stomach, donor 01-11002, age 83, caucasian, DNA extract endoderm stomach normal F Myers   BioChain CP-S12-D1234248-05_A808008 BTO:0001307 Stomach BC 01-11002
BC_Stomach_H12817N 3 stomach, donor H12817N, age 71, caucasian, DNA and RNA extract endoderm stomach normal M Myers   BioChain CP-S13-D1234248-05_B402070
BioChain CP-S10-R1234248-20_B402077		 BTO:0001307 Stomach BC H12817N
BC_Testis_N30 3 testis, donor N30, age 41, Asian, DNA extract mesoderm testis normal M Myers   BioChain D4234260_A711169 BTO:0001363 Testis BC N30
BC_Uterus_BN0765 3 uterus, donor BN0765, age 44, Asian, DNA extract   uterus normal F Myers   BioChain D4234274_A810099 BTO:0001424 Uterus BC BN0765
BE2_C 3 neuroblastoma, BE-C is a clone of the SK-N-BE neuroblastoma cell line (see ATCC CRL-2271) that was established in November of 1972 from a bone marrow biopsy taken from a 2-year-old individual with disseminated neuroblastoma after repeated courses of chemotherapy and radiotherapy. ectoderm brain cancer M Stam
Myers  		 ATCC CRL-2268 BTO:0001620 BE(2)-C
BG02ES 3 embryonic stem cell (hESC), BG02, treatment: H9 conditioned medium inner cell mass embryonic stem cell normal M Myers   BresaGen, Inc. BG02 (hESBGN.02) BTO:0001086 BG02ES
BG02ES-EBD 3 embryonic stem cell (hESC), BG02, embryoid body-derived inner cell mass embryonic stem cell normal M Myers   BresaGen, Inc. BG02 (hESBGN.02) BTO:0001086 BG02ES-EBD
BJ 3 skin fibroblast, "The line was established from skin taken from normal foreskin." - ATCC. (PMID: 9916803)   skin normal M Stam   ATCC CRL-2522 BTO:0001255 BJ
bone_marrow_HS27a 3 HS27a Human Marrow Stromal Cells are fibroblastoid cells immortalized with HPV16 E6/E7 genes as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005, insert DNA is LXSN-16 E6E7 packaged in PA31.   bone marrow normal M Stam   Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center HS27a BTO:0000141 Bone Marrow HS27a
bone_marrow_HS5 3 HS5 Human Marrow Stromal Cells are fibroblastoid cells immortalized with HPV16 E6/E7 genes as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005, insert DNA is LXSN-16 E6E7 packaged in PA31.   bone marrow normal M Stam   Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center HS5 BTO:0000141 Bone Marrow HS27a
bone_marrow_MSC 3 These cells are primary fibroblastoid cells obtained from human bone marrow of normal donors as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005.   bone marrow normal M Stam   Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center MSC BTO:0000141 Bone Marrow HS27a
Breast_OC 3 Primary frozen breast tissue from NCTC donor IDs 11-0068A (Rep B1) and 11-0067A (Rep B2), both African American   breast normal F Crawford   NCTC 11-0068A
NCTC 11-0067A		 BTO:0000149 Breast_OC
Caco-2 3 colorectal adenocarcinoma. (PMID: 1939345) endoderm colon cancer M Stam   ATCC HTB-37 BTO:0000195 Caco-2
CD20+ 2 B cells from donors RO01778 and RO01794, newly promoted to tier 2: not in 2011 analysis mesoderm blood normal F Stam   Dr. Heimfeld Lab at FHCRC CD20+ BTO:0000776 B-cells CD20+
CD20+_RO01778 2 B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis mesoderm blood normal F Stam   Rajinder Kaul, UW CD20+_RO01778 BTO:0000776 B-cells CD20+ (RO01778)
CD20+_RO01794 2 B cells, African American, draw number 1, newly promoted to tier 2: not in 2011 analysis mesoderm blood normal F Stam   Rajinder Kaul, UW CD20+_RO01794 BTO:0000776 B cells CD20+ RO01794
CD34+_Mobilized 3 hematopoietic progenitor cells- mobilized, from donor RO01679.   blood   M Stam   Dr. Heimfeld Lab at FHCRC FHCRC BTO:0000725 CD34+ Mobilized
CD4+_Naive_Wb11970640 3 CD4+ naive sorted cells, donor is Caucasian, male 26 year old, primary pheresis of single normal subject mesoderm blood normal M Crawford Stam   Dr. John Stamatoyannopoulos at UW Wb11970640 BTO:0000782 CD4+_Naive_Wb11970640
CD4+_Naive_Wb78495824 3 CD4+ naive sorted cells, donor is Causasian, female 35 year old, primary pheresis of single normal subject mesoderm blood normal F Crawford Stam   Dr. John Stamatoyannopoulos at UW Wb78495824 BTO:0000782 CD4+_Naive_Wb78495824
Cerebellum_OC 3 Primary frozen cerebellum tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3), all Caucasian   cerebellum normal M Crawford   NICHD 1104
NICHD 602
NICHD 1442		 BTO:0000232 Cerebellum_OC
Cerebrum_frontal_OC 3 Primary frozen frontal cerebrum tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3), all Caucasian   frontal cerebrum normal M Crawford   NICHD 1104
NICHD 602
NICHD 1442		 BTO:0000239 Cerebrum_frontal_OC
Chorion 3 chorion cells (outermost of two fetal membranes), fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes. extraembryonic mesoderm, trophectoderm fetal membrane   U Crawford   Dr. Amy Murtha at Duke University BTO:0000252 Chorion
CLL 3 chronic lymphocytic leukemia cell, T-cell lymphocyte mesoderm blood cancer F Crawford   Dr. Jennifer Brown at Harvard Medical School. CLL BTO:0001546 CLL
CMK 3 acute megakaryocytic leukemia cells, "established from the peripheral blood of a 10-month-old boy with Down's syndrome and acute megakaryocytic leukemia (AML M7) at relapse in 1985" - DSMZ. (PMID: 3016165) mesoderm blood cancer M Stam   DSMZ ACC-392 BTO:0004962 CMK
Colo829 3 malignant melanoma   skin cancer M Crawford   ATCC CRL-1974 BTO:0000849 Colo829
Colon_BC 3 colon, parent cell type to donors BC_01-11002 and BC_H12817N endoderm colon normal B Myers   BioChain CP-S12-D1234090-05_A903056
BioChain CP-S10-R1234090-20_B402074
BioChain CP-S13-D1234090-05_B111123
BioChain CP-S10-R1234090-20_B111053		 BTO:0000269 Colon BC
Colon_OC 3 Primary frozen colon tissue from NCTC donor IDs 10-0005A (Rep B1) and 10-0170A (Rep B2), African American and caucasian   colon normal B Crawford   NCTC 10-0005A
NCTC 10-0170A		 BTO:0000269 Colon OC
Cord_CD4_naive 3 CD4+ cells isolated from cord blood and enriched for naive populations mesoderm blood normal B Crawford Stam   Dr. David Randolph at University of Alabama, Birmingham Cord_CD4_naive BTO:0000782 T cells CD4+ naive cord blood
Cord_CD4_Th0 3 CD4+ cells isolated from cord blood and enriched for Th0 populations mesoderm blood normal B Crawford   Dr. David Randolph at University of Alabama, Birmingham Cord_CD4_Th0 BTO:0000782 T cells CD4+ Th0 cord blood
Cord_CD4_Th1 3 CD4+ cells isolated from cord blood and enriched for Th1 populations mesoderm blood normal B Crawford Stam   Dr. David Randolph at University of Alabama, Birmingham Cord_CD4_Th1 BTO:0000782 T cells CD4+ Th1 cord blood
Decidua 3 decidua cells (part of the mucous membrane lining uterus), Fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes decidua cervix   F Crawford   Dr. Amy Murtha at Duke University (Durham, NC). BTO:0001360 Decidua
Dnd41 3 T cell leukemia with Notch mutation mesoderm blood cancer M Bernstein   DSMZ Dnd41 BTO:0001106 Dnd41
ECC-1 3 epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes endoderm luminal epithelium cancer F Myers   ATCC CRL-2923 BTO:0000194 ECC-1
Endometrium_OC 3 Endometrium isolated from uterine lining   endometrium normal F Crawford   Dr. Steven Young Endometrium_OC BTO:0001422 Endometrium OC
Esophagus_BC 3 esophagus, parental cell type to donors 01-11002 and H12817N endoderm esophagus normal B Myers   BioChain CP-S12-D1234106-05_A803198
BioChain CP-S10-R1234106-20_B402075
BioChain CP-S13-D1234106-05_B302113
BioChain		 BTO:0000959 Esophagus BC
Fibrobl 3 child fibroblast   skin normal F Crawford   Coriell AG08470 BTO:0000452 Fibrobl
Fibrobl_GM03348 3 skin fibroblast   skin normal M Crawford   Coriell GM03348 BTO:0001255 Fibrobl_GM03348
FibroP 3 fibroblasts taken from individuals with Parkinson's disease, AG20443, AG08395 and AG08396 were pooled for this sample   skin normal U Crawford   Paul Tesar at Case Western University FibroP BTO:0000452 FibroP
FibroP_AG08395 3 fibroblasts taken from individuals with Parkinson's disease   skin fibroblast   F Crawford   Coriell AG08395 BTO:0000452 FibroP_AG08395
FibroP_AG08396 3 fibroblasts taken from individuals with Parkinson's disease   lung fibroblast   F Crawford   Coriell AG08396 BTO:0000452 FibroP_AG08396
FibroP_AG20443 3 fibroblasts taken from individuals with Parkinson's disease   skin fibroblast   M Crawford   Coriell AG20443 BTO:0000452 FibroP_AG20443
Frontal_cortex_OC 3 Primary ventromedial prefrontal cortex, from KPBBB donor IDs 673 (Rep B1) and 913 (Rep B2)   frontal cortex normal F Crawford   Kathleen Price Bryan Brain 673
Kathleen Price Bryan Brain 913		 BTO:0000484 Frontal cortex OC
GC_B_cell 3 Germinal center B cells (CD77+) isolated from de-identified tonsillectomy   tonsil normal U Crawford   Dr. Yanwen Jiang GC_B_cell BTO:0003671 GC_B_cell
Gliobla 3 glioblastoma, these cells (aka H54 and D54) come from a surgical resection from a patient with glioblastoma multiforme (WHO Grade IV). D54 is a commonly studied glioblastoma cell line (Bao et al., 2006) that has been thoroughly described by S Bigner (1981). (PMID: 7252524) ectoderm brain cancer U Crawford   Dr. Darrell Bigner at Duke University Medical Center D54 BTO:0000527 Gliobla
GM04503 3 adult twin pair fibroblasts, monozygotic twin of GM04504   skin normal F Stam   Coriell GM04503D BTO:0001253 GM04503
GM04504 3 adult twin pair fibroblasts, monozygotic twin of GM04503, 13% of the cells examined show random chromosome loss   skin normal F Stam   Coriell GM04504A BTO:0001253 GM04504
GM06990 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed mesoderm blood   F Stam   Coriell GM06990 BTO:0002062 (non-specific) GM06990
GM08714 3 lymphoblastoid cell line, Instability of heterochromatin of chromosomes 1, 9, and 16 with variable combined immunodeficiency; dysmorphic facial features, developmental delay, malabsorption, and recurrent infections; see GM08747 Fibroblast; donor subject is a compound heterozygote: one allele has a G>A transition at nucleotide 1807 (1807G>A) of the DNMT3B gene resulting in an Ala to Thr substitution at codon 603 [Ala603Thr (A603T)], the mutation occurring in a region between motifs I and IV within the catalytic domain of DNMT3B; the second allele has a G>A transition within intron 22 located 11 nucleotides 5-prime of the normal splice acceptor site [IVS22AS,G>A,-11] resulting in the generation of a novel splice acceptor site and a 9-bp insertion in the processed RNA. This results in the insertion of 3 amino acids (serine, threonine, and proline) at codon 744 (744ins3). The insertion was within the conserved region of the catalytic domain, which is likely to be disrupted by the insertion of a proline residue. This mutation was de novo. mesoderm blood   F Farnham   Coriell GM08714 BTO:0002062 GM08714
GM10248 3 lymphoblastoid cell line, Clinically normal; 4 paternal cousins have Cornelia de Lange syndrome; 46,XY, t(3;22)(q25.3;p12) mesoderm blood normal M Crawford   Coriell GM10248 BTO:0002062 GM10248
GM10266 3 lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation; seizures; 3 cousins are also affected; 46,XY,-22,+der (22)t(3;22)(q25.3;p12) mesoderm blood affected M Crawford   Coriell GM10266 BTO:0002062 GM10266
GM10847 3 lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed mesoderm blood   F Snyder   Coriell GM10847 BTO:0002062 (non-specific) GM10847
GM12801 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed mesoderm blood   M Stam   Coriell GM12801 BTO:0002062 (non-specific) GM12801
GM12812 3 B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah, Treatment: Epstein-Barr Virus transformed mesoderm blood   M Stam   Coriell GM12812 BTO:0002062 GM12812
GM12813 3 B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah, Treatment: Epstein-Barr Virus transformed mesoderm blood   F Stam   Coriell GM12813 BTO:0002062 GM12813
GM12864 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed mesoderm blood   M Stam   Coriell GM12864 BTO:0002062 (non-specific) GM12864
GM12865 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed mesoderm blood   F Stam   Coriell GM12865 BTO:0002062 (non-specific) GM12865
GM12866 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. mesoderm blood   M Stam   Coriell GM12866 BTO:0002062 (non-specific) GM12866
GM12867 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. mesoderm blood   F Stam   Coriell GM12867 BTO:0002062 (non-specific) GM12867
GM12868 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. mesoderm blood   F Stam   Coriell GM12868 BTO:0002062 (non-specific) GM12868
GM12869 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. mesoderm blood   F Stam   Coriell GM12869 BTO:0002062 (non-specific) GM12869
GM12870 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. mesoderm blood   M Stam   Coriell GM12870 BTO:0002062 (non-specific) GM12870
GM12871 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed. mesoderm blood   M Stam   Coriell GM12871 BTO:0002062 (non-specific) GM12871
GM12872 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed mesoderm blood   M Stam   Coriell GM12872 BTO:0002062 (non-specific) GM12872
GM12873 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed mesoderm blood   F Stam   Coriell GM12873 BTO:0002062 (non-specific) GM12873
GM12874 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed mesoderm blood   M Stam   Coriell GM12874 BTO:0002062 (non-specific) GM12874
GM12875 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed mesoderm blood   F Stam   Coriell GM12875 BTO:0002062 (non-specific) GM12875
GM12878 1 B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus mesoderm blood normal F ENCODE   Coriell GM12878 BTO:0002062 GM12878
GM12878-XiMat 3 B-lymphocyte, lymphoblastoid, cloned for maternal X inactivation, International HapMap Project, CEPH/Utah, Epstein-Barr Virus mesoderm blood normal F Myers   Hunt Willard at Duke University GM12878-XiMat BTO:0002062 GM12878-XiMat
GM12891 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed mesoderm blood   M Crawford   Coriell GM12891 BTO:0002062 (non-specific) GM12891
GM12892 3 B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed mesoderm blood   F Crawford   Coriell GM12892 BTO:0002062 (non-specific) GM12892
GM13976 3 lymphoblastoid cell line, clinically normal; monozygotic twin sister with Cornelia De Lange syndrome is GM13977 mesoderm blood normal F Crawford   Coriell GM13976 BTO:0002062 GM13976
GM13977 3 lymphoblastoid cell line, Clinically affected; microcephaly; low frontal hairline; synophris; "penciled" arched eyebrows; short nose; crescent shaped mouth; hirsutism; micromelia; short thumbs; mental retardation; clinically normal monozygotic twin sister is GM13976 mesoderm blood affected F Crawford   Coriell GM13977 BTO:0002062 GM13977
GM15510 3 lymphoblastoid NIGMS Human Genetic Cell Repository, DNA Polymorphism Discovery Resource Collection, treatment: Epstein-Barr Virus transformed mesoderm blood   U Snyder   Coriell GM15510 BTO:0002062 (non-specific) GM15510
GM18505 3 lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed mesoderm blood   F Snyder   Coriell GM18505 BTO:0002062 (non-specific) GM18505
GM18507 3 lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed mesoderm blood   M ENCODE   Coriell GM18507 BTO:0002062 (non-specific) GM18507
GM18526 3 lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed mesoderm blood   F Snyder   Coriell GM18526 BTO:0002062 (non-specific) GM18526
GM18951 3 lymphoblastoid, International HapMap Project, Japanese in Tokyo, Japan, treatment: Epstein-Barr Virus transformed mesoderm blood   F Snyder   Coriell GM18951 BTO:0002062 (non-specific) GM18951
GM19099 3 lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed mesoderm blood   F Snyder   Coriell GM19099 BTO:0002062 (non-specific) GM19099
GM19193 3 lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed mesoderm blood   F Snyder   Coriell GM19193 BTO:0002062 (non-specific) GM19193
GM19238 3 B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed mesoderm blood   F Crawford   Coriell GM19238 BTO:0002062 (non-specific) GM19238
GM19239 3 B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed mesoderm blood   M Crawford   Coriell GM19239 BTO:0002062 (non-specific) GM19239
GM19240 3 B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed mesoderm blood   F Crawford   Coriell GM19240 BTO:0002062 (non-specific) GM19240
GM20000 3 lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation mesoderm blood affected M Crawford   Coriell GM20000 BTO:0002062 GM20000
H0287 3 EBV-transformed lymphoblastoid cell line (LCL) was derived from peripheral blood donated by a normal healthy male. mesoderm blood normal M Stam   Dr. John Stamatoyannopoulos at UW H0287 BTO:0002807 H0287
H1-hESC 1 embryonic stem cells inner cell mass embryonic stem cell normal M ENCODE   WiCell Research Institute WA01 CL:0000007 H1-hESC
H1-neurons 2 neurons derived from H1 embryonic stem cells, newly promoted to tier 2: not in 2011 analysis ectoderm neurons normal M Cellular Dynamics International Batch 1
Cellular Dynamics International Batch 2  		 CDI TBD BTO:0000938 H1-neurons
H7-hESC 3 undifferentiated embryonic stem cells inner cell mass     U StamAndCrawford   WiCell Research Institute WA07 (H7) BTO:0001086 H7-hESC
H9ES 3 embryonic stem cell (hESC) H9 inner cell mass embryonic stem cell   F Myers   WiCell Research Institute WA09 (H9) BTO:0001086 H9ES
H9ES-AFP+ 3 embryonic stem cell (hESC), H9-derived, treatment: H9 AFP+ inner cell mass embryonic stem cell   F Myers   WiCell Research Institute WA09 (H9) BTO:0001086 H9ES-AFP+
H9ES-AFP- 3 embryonic stem cell (hESC), H9-derived, treatment: H9 AFP- inner cell mass embryonic stem cell   F Myers   WiCell Research Institute WA09 (H9) BTO:0001086 H9ES-AFP-
H9ES-CM 3 embryonic stem cell (hESC) H9, treatment: H9 conditioned medium inner cell mass embryonic stem cell   F Myers   WiCell Research Institute WA09 (H9) BTO:0001086 H9ES-CM
H9ES-E 3 embryonic stem cell (hESC) H9, endoderm inner cell mass embryonic stem cell   F Myers   WiCell Research Institute WA09 (H9) BTO:0001086 H9ES-E
H9ES-EB 3 embryonic stem cell (hESC) H9, embryoid bodies inner cell mass embryonic stem cell   F Myers   WiCell Research Institute WA09 (H9) BTO:0001086 H9ES-EB
H9ES-EBD 3 embryonic stem cell (hESC) H9, embryoid body-derived inner cell mass embryonic stem cell   F Myers   WiCell Research Institute WA09 (H9) BTO:0001086 H9ES-EBD
HA-h 3 astrocytes-hippocampal ectoderm brain hippocampus normal U Stam   ScienCell 1830 BTO:0000099 HA-h
HA-sp 3 astrocytes spinal cord ectoderm spinal cord normal U Stam   ScienCell 1820 BTO:0000099 HA-sp
HAc 3 astrocytes-cerebellar ectoderm cerebellar normal U Stam   ScienCell 1810 BTO:0000099 HAc
HAEpiC 3 amniotic epithelial cells   epithelium normal U Stam   ScienCell 7110 BTO:0004660 HAEpiC
HAL 3 adult liver, genomic DNA purified from surgically excised adult human liver endoderm liver   U Myers   Asterand, Inc. HAL BTO:0000759 HAL
HAoAF 3 Aortic Adventitial Fibroblasts from two individuals, HAoAF_6090101.11 and HAoAF_6111301.9 from tunica adventitia mesoderm blood vessel normal B Gingeras
Gingeras  		 PromoCell HAoAF BTO:0000135 HAoAF
HAoAF_6090101.11 3 Aortic Adventitial Fibroblasts from tunica adventitia mesoderm blood vessel normal M Gingeras   PromoCell C-14037 BTO:0000135 HAoAF_6090101.11
HAoAF_6111301.9 3 Aortic Adventitial Fibroblasts from tunica adventitia mesoderm blood vessel normal F Gingeras   PromoCell C-14037 BTO:0000135 HAoAF_6111301.9
HAoEC 3 Aortic Endothelial Cells (thoracic) from two individuals, HAoEC_7071706.1 and HAoEC_8061102.1 mesoderm blood vessel normal B Gingeras
Gingeras  		 PromoCell HAoEC BTO:0000394 HAoEC
HAoEC_7071706.1 3 Aortic Endothelial Cells mesoderm blood vessel normal F Gingeras   PromoCell C-14023 BTO:0000394 HAoEC_7071706.1
HAoEC_8061102.1 3 Aortic Endothelial Cells from throracic mesoderm blood vessel normal M Gingeras   PromoCell C-14023 BTO:0000394 HAoEC_8061102.1
HBMEC 3 brain microvascular endothelial cells mesoderm blood vessel normal U Stam   ScienCell 1000 BTO:0003636 HBMEC
HBVP 3 brain vascular pericytes mesoderm blood vessel normal U Stam   ScienCell 1200 BTO:0002441 HBVP
HBVSMC 3 brain vascular smooth muscle cells. mesoderm blood vessel normal F Stam   ScienCell 1100 BTO:0002488 HBVSMC
HCF 3 cardiac fibroblasts mesoderm heart normal U Stam   ScienCell 6300 BTO:0003093 HCF
HCFaa 3 cardiac fibroblasts- adult atrial mesoderm heart normal F Stam   ScienCell 6320 BTO:0003093 HCFaa
HCH 3 Undifferentiated Chondrocytes from two individuals, HCH_8100808.2 and HCH_0011308.2P from knee joint missing cartilage normal M Gingeras
Gingeras  		 PromoCell HCH BTO:0000249 HCH
HCH_0011308.2P 3 Undifferentiated Chondrocytes from knee joint missing cartilage normal F Gingeras   PromoCell C-14070 BTO:0000249 HCH_0011308.2P
HCH_8100808.2 3 Undifferentiated Chondrocytes from knee joint missing cartilage normal M Gingeras   PromoCell C-14070 BTO:0000249 HCH_8100808.2
HCM 3 cardiac myocytes mesoderm heart normal U Stam   ScienCell 6200 BTO:0001539 HCM
HConF 3 conjunctival fibroblast ectoderm eye   U Stam   ScienCell 6570 BTO:0003415 HConF
HCPEpiC 3 choroid plexus epithelial cells ectoderm epithelium normal U Stam   ScienCell 1310 BTO:0000258 HCPEpiC
HCT-116 3 colorectal carcinoma (PMID: 7214343) endoderm colon cancer M ENCODE
Stam  		 ATCC CCL-247 BTO:0002254 HCT-116
Heart_OC 3 Primary frozen heart tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1863 (Rep B1 FAIRE), 4548 (Rep B2 FAIRE)   heart normal B Crawford   NICHD 1104
NICHD 602
NICHD 1442
NICHD 1863
NICHD 4548		 BTO:0000562 Heart_OC
Heart_STL003 3 Standard procurement of heart tissue from a 34 year old caucasian male.   heart normal M   Snyder lab STL003 BTO:0000562 Heart_STL003
HEEpiC 3 esophageal epithelial cells endoderm epithelium normal U Stam   ScienCell 2720 BTO:0001578 HEEpiC
HEK293 3 embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234) mesoderm kidney   U Stam
Snyder  		 ATCC CRL-1573 BTO:0000007 HEK293
HEK293-T-REx 3 embryonic kidney cells transformed with Adenovirus 5 DNA stably expressing tetracycline repressor, HEK293 (ATCC number CRL-1573) is the parental cell line, hypotriploid, XXX mesoderm kidney   F Farnham   Invitrogen r71007 BTO:0000007 HEK293-T-REx
HEK293T 3 embryonic kidney that expresses SV40 large T antigen, HEK293 (ATCC number CRL-1573) is the parental cell line mesoderm kidney   F Crawford   Thermo Scientific Open Biosystems HCL4517 BTO:0000007 HEK293T
HeLa-S3 2 cervical carcinoma ectoderm cervix cancer F ENCODE
Crawford  		 ATCC CCL-2.2 BTO:0000568 HeLa-S3
Hepatocytes 3 primary hepatocytes, liver perfused by enzymes to generate single cell suspension endoderm liver normal B Crawford   zen-bio Missing BTO:0000575 Hepatocytes
HepG2 2 hepatocellular carcinoma endoderm liver cancer M ENCODE   ATCC HB-8065 BTO:0000599 HepG2
HFDPC 3 Follicle Dermal Papilla Cells from two individuals, HFDPC_0100503.2 and HFDPC_0102703.3 from lateral scalp (brown, blond) missing skin normal F Gingeras
Gingeras  		 PromoCell HFDPC BTO:0001849 HFDPC
HFDPC_0100503.2 3 Follicle Dermal Papilla Cells from lateral scalp (brown) missing skin normal F Gingeras   PromoCell C-14005 BTO:0001849 HFDPC_0100503.2
HFDPC_0102703.3 3 Follicle Dermal Papilla Cells from lateral scalp (blond) missing skin normal F Gingeras   PromoCell C-14005 BTO:0001849 HFDPC_0102703.3
HFF 3 foreskin fibroblast   foreskin normal M Stam   Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center HFF BTO:0002245 HFF
HFF-Myc 3 foreskin fibroblast cells expressing canine cMyc fibroblast foreskin normal M Stam   Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center HFF-Myc BTO:0002245 HFF-Myc
HFL11W 3 fetal liver 11 weeks, consented fetal liver samples were isolated from legally aborted fetuses at 11 weeks gestation endoderm liver   U ENCODE   Unknown HFL11W BTO:0000759 HFL11W
HFL24W 3 fetal liver 24 weeks, consented fetal liver samples were isolated from legally aborted fetuses at 24 weeks gestation endoderm liver   U Myers   Unknown HFL24W BTO:0000759 HFL24W
HGF 3 gingival fibroblasts   gingiva normal U Stam   ScienCell 2620 BTO:0000519 (non-specific) HGF
HHSEC 3 hepatic sinusoidal endothelial cells endoderm liver   U Stam   ScienCell 5000 BTO:0001251 HHSEC
HIPEpiC 3 iris pigment epithelial cells ectoderm epithelium normal U Stam   ScienCell 6560 BTO:0000653 HIPEpiC
HL-60 3 promyelocytic leukemia cells, (PMID: 276884) mesoderm blood cancer F Stam   ATCC CCL-240 BTO:0000738 HL-60
HMEC 3 mammary epithelial cells ectoderm breast normal U Bernstein
Crawford
Stam  		 Lonza CC-2551 BTO:0002178 HMEC
HMEpC 3 Mammary Epithelial Cells (placeholder, waiting on second lot/donor from PromoCell) ectoderm mammary gland normal F Gingeras   PromoCell HMEpC BTO:0002178 HMEpC
HMEpC_6022801.3 3 Mammary Epithelial Cells ectoderm mammary gland normal F Gingeras   PromoCell C-14066 BTO:0002178 HMEpC_6022801.3
HMF 3 mammary fibroblasts   mammary   F Stam   ScienCell 7630 BTO:0000817 HMF
hMNC-CB 3 Mononuclear Cells (umbilical cord blood-single donor) from two individuals, hMNC-CB_9111701.6 and hMNC-CB_8072802.6 missing blood normal B Gingeras
Gingeras  		 PromoCell hMNC-CB BTO:0004054 hMNC-CB
hMNC-CB_8072802.6 3 Mononuclear Cells, umbilical cord blood-single donor missing blood normal M Gingeras   PromoCell C-14096 BTO:0004054 hMNC-CB_8072802.6
hMNC-CB_9111701.6 3 Mononuclear Cells, umbilical cord blood-single donor missing blood normal F Gingeras   PromoCell C-14096 BTO:0004054 hMNC-CB_9111701.6
hMNC-PB 3 Mononuclear Cells (peripheral blood-single donor) from two individuals, hMNC-PB_0022330.9 and hMNC-PB_0082430.9 missing blood normal B Gingeras
Gingeras  		 PromoCell hMNC-PB BTO:0001025 hMNC-PB
hMNC-PB_0022330.9 3 Mononuclear Cells, peripheral blood-single donor missing blood normal M Gingeras   PromoCell C-14098 BTO:0001025 hMNC-PB_0022330.9
hMNC-PB_0082430.9 3 Mononuclear Cells, peripheral blood-single donor missing blood normal F Gingeras   PromoCell C-14098 BTO:0001025 hMNC-PB_0082430.9
hMSC-AT 3 Undifferentiated Mesenchymal Stem Cells from two individuals, hMSC-AT_9061601.12 and hMSC-AT_0102604.12 from subcutaneous abdomen adipose tissue missing adipose normal F Gingeras
Gingeras  		 PromoCell hMSC-AT BTO:0003298 hMSC-AT
hMSC-AT_0102604.12 3 Undifferentiated Mesenchymal Stem Cells from subcutaneous abdomen adipose tissue missing adipose normal F Gingeras   PromoCell C-14092 BTO:0003298 hMSC-AT_0102604.12
hMSC-AT_9061601.12 3 Undifferentiated Mesenchymal Stem Cells from abdomen missing subcutaneous adipose tissue normal F Gingeras   PromoCell C-14092 BTO:0003298 hMSC-AT_9061601.12
hMSC-BM 3 Undifferentiated Mesenchymal Stem Cells from two individuals, hMSC-BM_0050602.11 and hMSC-BM_0051105.11 from femoral head missing bone marrow normal B Gingeras
Gingeras  		 PromoCell hMSC-BM BTO:0003298 hMSC-BM
hMSC-BM_0050602.11 3 Undifferentiated Mesenchymal Stem Cells from femoral head missing bone marrow normal M Gingeras   PromoCell C-14090 BTO:0003298 hMSC-BM_0050602.11
hMSC-BM_0051105.11 3 Undifferentiated Mesenchymal Stem Cells from femoral head missing bone marrow normal F Gingeras   PromoCell C-14090 BTO:0003298 hMSC-BM_0051105.11
hMSC-UC 3 Undifferentiated Mesenchymal Stem Cells from two individuals, hMSC-UC_0081101.7 and hMSC-UC_0052501.7 from matrix (Wharton's Jelly) missing umbilical cord normal B Gingeras
Gingeras  		 PromoCell hMSC-UC BTO:0003298 hMSC-UC
hMSC-UC_0052501.7 3 Undifferentiated Mesenchymal Stem Cells from matrix (Wharton's Jelly) missing umbilical cord normal M Gingeras   PromoCell C-14091 BTO:0003298 hMSC-UC_0052501.7
hMSC-UC_0081101.7 3 Undifferentiated Mesenchymal Stem Cells from matrix (Wharton's Jelly) missing umbilical cord normal F Gingeras   PromoCell C-14091 BTO:0003298 hMSC-UC_0081101.7
HMVEC-dAd 3 adult dermal microvascular endothelial cells.   blood vessel normal F Stam   Lonza CC-2543,CC-3202 BTO:0001854 HMVEC-dAd
HMVEC-dBl-Ad 3 adult blood microvascular endothelial cells, dermal-derived mesoderm blood vessel normal F Stam   Lonza CC-2811, CC-2811T75 BTO:0004574 HMVEC-dBl-Ad
HMVEC-dBl-Neo 3 neonatal blood microvascular endothelial cells, dermal-derived mesoderm blood vessel normal M Stam   Lonza CC-2813, CC-2813T75 BTO:0004574 HMVEC-dBl-Neo
HMVEC-dLy-Ad 3 adult lymphatic microvascular endothelial cells, dermal-derived mesoderm blood vessel normal F Stam   Lonza CC-2810, CC-2810T75 BTO:0004574 HMVEC-dLy-Ad
HMVEC-dLy-Neo 3 neonatal lymphatic microvascular endothelial cells, dermal-derived mesoderm blood vessel normal M Stam   Lonza CC-2812, CC-2812T25 BTO:0004574 HMVEC-dLy-Neo
HMVEC-dNeo 3 neonatal microvascular endothelial cells (single donor), dermal-derived mesoderm blood vessel normal M Stam   Lonza CC-2505, CC-2505T225 BTO:0004574 HMVEC-dNeo
HMVEC-LBl 3 blood microvascular endothelial cells, lung-derived mesoderm blood vessel normal F Stam   Lonza CC-2815, CC-2815T75 BTO:0003599 HMVEC-LBl
HMVEC-LLy 3 lymphatic microvascular endothelial cells, lung-derived mesoderm blood vessel normal F Stam   Lonza CC-2814, CC-2814T25 BTO:0003599 HMVEC-LLy
HNPCEpiC 3 non-pigment ciliary epithelial cells   epithelium normal U Stam   ScienCell 6580 BTO:0001770 HNPCEpiC
HOB 3 Undifferentiated Osteoblasts from two individuals, HOB_0090202.1 and HOB_0091301 from femoral head missing cancellous bone normal M Gingeras
Gingeras  		 PromoCell HOB BTO:0004324 HOB
HOB_0090202.1 3 Undifferentiated Osteoblasts from femoral head missing cancellous bone normal M Gingeras   PromoCell C-14071 BTO:0004324 HOB_0090202.1
HOB_0091301 3 Undifferentiated Osteoblasts from femoral head missing cancellous bone normal F Gingeras   PromoCell C-14071 BTO:0004324 HOB_0091301
HPAEC 3 pulmonary artery endothelial cells. mesoderm blood vessel normal F Stam   Lonza CC-2530,CC-3162 BTO:0001141 HPAEC
HPAEpiC 3 pulmonary alveolar epithelial cells   epithelium normal U Stam   ScienCell 3200 BTO:0003511 HPAEpiC
HPAF 3 pulmonary artery fibroblasts mesoderm blood vessel normal U Stam   ScienCell 3120 BTO:0000778 HPAF
HPC-PL 3 Undifferentiated Pericytes from HPC-PL_0032601.13 and HPC-PL_0101504.13 missing placenta normal B Gingeras
Gingeras  		 PromoCell pericytes BTO:0001975 HPC-PL
HPC-PL_0032601.13 3 Undifferentiated Pericytes missing placenta normal M Gingeras   PromoCell C-14095 BTO:0001975 HPC-PL_0032601.13
HPC-PL_0101504.13 3 Undifferentiated Pericytes missing placenta normal F Gingeras   PromoCell C-14095 BTO:0001975 HPC-PL_0101504.13
HPDE6-E6E7 3 pancreatic duct cells immortalized with E6E7 gene of HPV endoderm pancreatic duct normal F Crawford   Dr. Ming-Sound Tsao, Ontario Cancer Institute HPDE6-E6E7 BTO:0002362 HPDE6-E6E7
HPdLF 3 periodontal ligament fibroblasts   epithelium normal M Stam   Lonza CC-7049 BTO:0001020 HPdLF
HPF 3 pulmonary fibroblasts isolated from lung tissue   lung normal U Stam   ScienCell 3300 BTO:0000764 HPF
HPIEpC 3 Placental Epithelial Cells amniotic membrane missing placenta normal B Gingeras
Gingeras  		 PromoCell human-placental-epithelial-cells-hplepc BTO:0001975 HPIEpC
HPIEpC_9012801.2 3 Placental Epithelial Cells amniotic membrane missing placenta normal F Gingeras   PromoCell C-14069 BTO:0001975 HPIEpC_9012801.2
HPIEpC_9041503.2 3 Placental Epithelial Cells amniotic membrane missing placenta normal M Gingeras   PromoCell C-14069 BTO:0001975 HPIEpC_9041503.2
HRCEpiC 3 renal cortical epithelial cells mesoderm epithelium normal U Stam   Lonza CC-2554 BTO:0000059 (non-specific) HRCEpiC
HRE 3 renal epithelial cells mesoderm epithelium normal U Stam   Lonza CC-2556 BTO:0000059 (non-specific) HRE
HRGEC 3 renal glomerular endothelial cells mesoderm kidney normal U Stam   ScienCell 4000 BTO:0001176 HRGEC
HRPEpiC 3 retinal pigment epithelial cells ectoderm epithelium normal U Stam   ScienCell 6540 BTO:0001177 HRPEpiC
HSaVEC 3 Saphenous Vein Endothelial Cells from two individuals, HSaVEC_9100101.15 and HSaVEC_0022202.16 from thigh mesoderm blood vessel normal M Gingeras
Gingeras  		 PromoCell HSaVEC BTO:0003275 HSaVEC
HSaVEC_0022202.16 3 Saphenous Vein Endothelial Cells from thigh mesoderm blood vessel normal M Gingeras   PromoCell C-14025 BTO:0003275 HSaVEC_0022202.16
HSaVEC_9100101.15 3 Saphenous Vein Endothelial Cells from thigh mesoderm blood vessel normal M Gingeras   PromoCell C-14025 BTO:0003275 HSaVEC_9100101.15
HSMM 3 skeletal muscle myoblasts mesoderm muscle normal U Bernstein
Crawford
Stam  		 Refer to the protocol documents for differing sources CC-2580 BTO:0000256 (non-specific) HSMM
HSMM_emb 3 embryonic myoblast   muscle   U Crawford   Duke/UNC/UT/EBI ENCODE group fetal myoblast cell strain (H246 and H275) from Dr Stephen Hauschka- U. of Washington 1980 BTO:0000222 HSMM_emb
HSMM_FSHD 3 primary myoblast from Facioscapulohumeral Muscular Dystrophy (FSHD) patients, muscle needle biopsies   muscle   U Crawford   Duke/UNC/UT/EBI ENCODE group HSMM_FSHD BTO:0000222 HSMM_FSHD
HSMMtube 3 skeletal muscle myotubes differentiated from the HSMM cell line mesoderm muscle normal U Bernstein
Crawford  		 Lonza See HSMM BTO:0001760 (non-specific) HSMMtube
HSMMtube_emb 3 embryonic myotube   muscle   U Crawford   Duke/UNC/UT/EBI ENCODE group fetal myoblast cell strain (H246 and H275) from Dr Stephen Hauschka- U. of Washington 1980 BTO:0001760 HSMMtube_emb
HSMMtube_FSHD 3 myotube from Facioscapulohumeral Muscular Dystrophy (FSHD) patient, muscle needle biopsies   muscle   U Crawford   Duke/UNC/UT/EBI ENCODE group HSMMtube_FSHD BTO:0001760 HSMMtube_FSHD
HT-1080 3 epithelial cell line derived from a fibrosarcoma, (PMID: 4132053), pseudo-diploid male with a modal chromosome number of 46, numerous chromosome abnormalities mesoderm epithelium cancer M  missing   ATCC CCL-121 BTO:0001282 HT-1080
HTR8svn 3 trophoblast (HTR-8/SVneo) cell line, a thin layer of ectoderm that forms the wall of many mammalian blastulas and functions in the nutrition and implantation of the embryo ectoderm blastula normal F Crawford   Charles H. Graham, Department of Anatomy & Cell Biology, Queen's University at Kingston, Kingston, Ontario, Canada HTR8svn BTO:0001079 HTR8svn
Huh-7 3 hepatocellular carcinoma endoderm liver cancer M Crawford   Dr. Ravi Jhaveri at Duke University Huh-7 BTO:0001950 Huh-7
Huh-7.5 3 hepatocellular carcinoma, hepatocytes selected for high levels of hepatitis C replication endoderm liver cancer M Crawford   Dr. Ravi Jhaveri at Duke University Huh-7.5 BTO:0001950 Huh-7.5
HUVEC 2 umbilical vein endothelial cells mesoderm blood vessel normal U ENCODE   Lonza CC-2517 BTO:0001949 HUVEC
HVMF 3 villous mesenchymal fibroblast cells   connective normal U Stam
Gingeras
Gingeras  		 ScienCell 7130 BTO:0002625 HVMF
HVMF_6091203.3 3 Villous Mesenchymal Fibroblasts from villous tissue missing placenta normal M Gingeras   PromoCell C-14034 BTO:0001975 HVMF_6091203.3
HVMF_6100401.3 3 Villous Mesenchymal Fibroblasts from villous tissue missing placenta normal F Gingeras   PromoCell C-14034 BTO:0001975 HVMF_6100401.3
HWP 3 Undifferentiated White Preadipocytes from two individuals, HWP_0092205 and HWP_8120201.5, subcutaneous adipose tissue from abdomen / upper arm missing adipose normal B Gingeras   PromoCell HWP BTO:0004042 HWP
HWP_0092205 3 Undifferentiated White Preadipocytes from abdomen missing subcutaneous adipose tissue normal M Gingeras
Gingeras  		 PromoCell C-14072 BTO:0004042 HWP_0092205
HWP_8120201.5 3 Undifferentiated White Preadipocytes from upper arm missing subcutaneous adipose tissue normal F Gingeras   PromoCell C-14072 BTO:0004042 HWP_8120201.5
IMR90 2 fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis endoderm lung normal F Stam   ATCC CCL-186 BTO:0001229 IMR90
iPS 3 induced pluripotent stem cell derived from skin fibroblast induced pluripotent stem cell derived from skin fibroblast induced pluripotent stem cell   B Crawford   Josh Chenoweth, Laboratory of Molecular Biology, National Institutes of Health, NINDS iPS BTO:0000001 (nonspecific) iPS
iPS_CWRU1 3 iPS cells derived from MSC658 fibroblast   induced pluripotent cell (iPS)   M Crawford   Paul Tesar at Case Western University iPS_CWRU1 BTO:0000001 iPS_CWRU1
iPS_hFib2_iPS4 3 induced pluripotent stem cell line 4 derived from skin fibroblast of a 30 year old donor, same donor as iPS_hFib2_iPS5 missing induced pluripotent cell (iPS) normal M Gilbert   HSCI iPS Cell Core Facility hFib2_iPS4 BTO:0000001 iPS_hFib2_iPS4
iPS_hFib2_iPS5 3 induced pluripotent stem cell line 5 derived from skin fibroblast of a 30 year old donor, same donor as iPS_hFib2_iPS4 missing induced pluripotent cell (iPS) normal M Gilbert   HSCI iPS Cell Core Facility hFib2_iPS5 BTO:0000001 iPS_hFib2_iPS5
iPS_NIHi11 3 iPS cells derived from AG20443 fibroblast   induced pluripotent cell (iPS)   M Crawford   Josh Chenoweth, Laboratory of Molecular Biology, National Institutes of Health, NINDS iPS_NIHi11 BTO:0000001 iPS_NIHi11
iPS_NIHi7 3 iPS cells derived from AG08395 fibroblast   induced pluripotent cell (iPS)   F Crawford   Josh Chenoweth, Laboratory of Molecular Biology, National Institutes of Health, NINDS iPS_NIHi7 BTO:0000001 iPS_NIHi7
Ishikawa 3 endometrial adenocarcinoma   uterus   F Crawford   Sigma-Aldrich 99040201 BTO:0000658 Ishikawa
Jurkat 3 T lymphoblastoid derived from an acute T cell leukemia, "The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM." - ATCC. (PMID: 68013) mesoderm blood cancer M Myers
Stam  		 ATCC TIB-152 BTO:0001948 Jurkat
K562 1 leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC mesoderm blood cancer F ENCODE   ATCC CCL-243 BTO:0000664 K562
Kidney_BC 3 kidney, parental cell type to donors 01-11002 and H12817N mesoderm kidney normal B Myers   BioChain CP-S12-D1234142-05_B402060
BioChain CP-S10-R1234142-20_A808055
BioChain CP-S13-D1234142-05_B402061
BioChain CP-S10-R1234142-20_B111054		 BTO:0000671 Kidney BC
Kidney_OC 3 Primary frozen kidney tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1863 (Rep B3 FAIRE) and NCTC donor ID 10-0022A (Rep B1 FAIRE)   kidney normal B Crawford   NICHD 1104
NICHD 602
NICHD 1442
NCTC 10-0022A
NICHD 1863		 BTO:0000671 Kidney OC
LHCN-M2 2 skeletal myoblasts derived from satellite cells from the pectoralis major muscle of a 41 year old caucasian heart transplant donor, immortalized with lox-hygro-hTERT ("LH"), and Cdk4-neo ("CN"), Zhu et al. (2007) in Aging Cell, vol. 6, pp 515-523, newly promoted to tier 2: not in 2011 analysis. mesoderm skeletal muscle myoblast   M Wold   Dr. Woodring Wright Missing BTO:0005046 LHCN-M2
LHSR 3 prostate epithelial cells (PrEC), multiple human donors, all of whom are HIV-1, Hepatitis B and Hepatitis C negative, treatment: to create LHSR, cells were infected with amphotropic retroviruses encoding the SV40 large T antigen (L), the telomerase catalytic subunit hTERT (H), the SV40 small T antigen (S) and an oncogenic allele of H-ras (R). endoderm epithelium normal U Crawford   William Hahn at the Dana Farber Cancer Institute, Boston, MA LHSR BTO:0002398 LHSR
Liver_OC 3 Primary frozen liver tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3)   liver normal M Crawford   NICHD 1104
NICHD 602
NICHD 1442		 BTO:0000759 Liver_OC
Liver_STL004 3 Primary liver tissue from the right portion of a standard liver procurement from a 6 year old female.   liver normal F   Snyder lab STL004 BTO:0000759 Liver_STL004
Liver_STL011 3 Primary liver tissue of a standard liver procurement from a 36 year old caucasian male.   liver normal M   Snyder lab STL011 BTO:0000759 Liver_STL011
LNCaP 3 prostate adenocarcinoma, "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.) endoderm prostate cancer M Crawford
Farnham
Stam  		 ATCC CRL-1740 BTO:0002021 LNCaP
Loucy 3 T cell leukemia mesoderm blood cancer F Bernstein   DSMZ Loucy BTO:0002104 Loucy
Lung_BC 3 lung, parental cell type to donors 01-11002 and H12817N endoderm lung normal B Myers   BioChain CP-S12-D1234152-05_A610240
BioChain CP-S10-R1234152-20_A906114
BioChain CP-S13-D1234152-05_B402062
BioChain CP-S10-R1234152-20_B207133		 BTO:0000763 Lung BC
Lung_OC 3 Primary frozen lung tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase) and CF Center donor IDs DD006I (Rep B1 FAIRE) and DD007I (Rep B2 FAIRE)   Lung normal B Crawford   NICHD 1104
NICHD 602
NICHD 1442
CF Center DD006I
CF Center DD007I		 BTO:0000763 Lung_OC
Lymphoblastoid_cell_line 3 parental cell type to lymphoblastoid cell lines mesoderm blood normal B Stam   Coriell various GMXXXXX cell lines BTO:0002062 (non-specific) Lymphoblastoid_cell_line
M059J 3 malignant glioblastoma, glioma, lack DNA-dependent protein kinase activity, deficient in repair of DNA double strand breaks, the cells are negative for glial fibrillary acidic protein (GFAP), tumor specimen taken from a 33 year old ectoderm brain cancer M Stam   ATCC CRL-2366 BTO:0000527 M059J
MCF-7 2 mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis ectoderm breast cancer F Crawford
Farnham
Stam  		 ATCC HTB-22 BTO:0000093 MCF-7
MCF10A-Er-Src 3 mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER) ectoderm breast   F Struhl   Struhl laboratory MCF10A-Er-Src BTO:0001939 MCF10A-Er-Src
MDA-MB-231 3 breast adenocarcinoma, epithelial cell line, derived from metastatic site: pleural effusion. (PMID: 730202) ectoderm breast cancer F Struhl   ATCC HTB-26 BTO:0000815 MDA-MB-231
Medullo 3 medulloblastoma (aka D721), surgical resection from a patient with medulloblastoma as described by Darrell Bigner (1997) ectoderm brain cancer U Crawford   Dr. Darrell Bigner at Duke University Medical Center BTO:0001359 Medullo
Medullo_D341 3 Medulloblastoma cell line of neuron or neuron precurosr origin   brain cancer U Crawford   Dr. Darrell Bigner at Duke University Medical Center Medullo_D341 BTO:0001757 Medullo_D341
Mel_2183 3 Melanoma Cell line   Melanoma cell line derived from melanoma metastasis cancer U Crawford   Dr. Yardena Samuels Mel_2183 BTO:0000849 Mel_2183
Melano 3 epidermal melanocytes ectoderm skin normal U Crawford   ScienCell 2200 BTO:0000847 Melano
Monocytes-CD14+ 2 Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis mesoderm monocytes normal F Stam   S. Heimfeld Laboratory, FHCRC Monocytes-CD14+ BTO:0000876 Monocytes CD14+
Monocytes-CD14+_RO01746 2 Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis mesoderm monocytes normal F Stam   S. Heimfeld Laboratory, FHCRC Monocytes-CD14+_RO01746 BTO:0000876 Monocytes CD14+ RO01746
Monocytes-CD14+_RO01826 2 Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, Monocytes-CD14+_RO01826 is a second draw being used as a replicate for Monocytes-CD14+_RO01746, newly promoted to tier 2: not in 2011 analysis mesoderm monocytes normal F Stam   S. Heimfeld Laboratory, FHCRC Monocytes-CD14+_RO01826 BTO:0000876 Monocytes CD14+ RO01826
MRT_A204 3 Malignant rhabdoid tumor (MRT) line, rhabdomyosarcoma missing muscle cancer F Crawford   ATCC HTB-82 BTO:0002062 MRT A204
MRT_G401 3 Malignant renal rhabdoid tumor line missing kidney cancer M Crawford   ATCC CRL-1441 BTO:0002062 MRT G401
MRT_TTC549 3 Malignant Hepatic Rhabdoid tumor line missing liver cancer M Crawford   ATCC TTC549 BTO:0002062 MRT TTC549
Myometr 3 myometrial cells   myometrium normal F Crawford   Dr. Jennifer Condon of Magee Women's Research Institute BTO:0000907 Myometr
Naive_B_cell 3 Naive B cells (IgD+) isolated from de-identified tonsillectomy   tonsil normal U Crawford   Dr. Yanwen Jiang Naive_B_cell BTO:0000776 Naive_B_cell
NB4 3 acute promyelocytic leukemia cell line. (PMID: 1995093) mesoderm blood cancer U ENCODE
Stam  		 Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/ NB4 BTO:0002489 NB4
NH-A 3 astrocytes (also called Astrocy) ectoderm brain normal U Bernstein
Stam
ENCODE  		 Lonza CC-2565 BTO:0000099 NH-A
NHBE 3 bronchial epithelial cells endoderm epithelium normal F Crawford   Lonza CC-2541 BTO:0002022 NHBE
NHBE_RA 3 bronchial epithelial cells with retinoic acid   bronchial epithelium normal F UW Stam   Lonza CC-2540, CC3170 BTO:0001845 NHBE_RA
NHDF 3 Dermal Fibroblasts from temple / breast missing skin normal F Gingeras
Gingeras  		 PromoCell NHDF BTO:0003185 NHDF
NHDF-Ad 3 adult dermal fibroblasts mesoderm skin normal F Stam
Bernstein  		 Lonza CC-2511, CC-2511T225 BTO:0004419 NHDF-Ad
NHDF-neo 3 neonatal dermal fibroblasts mesoderm skin normal U Stam   Lonza CC-2509 BTO:0004419 NHDF-neo
NHDF_0060801.3 3 Dermal Fibroblasts from temple missing skin normal F Gingeras   PromoCell C-14031 BTO:0003185 NHDF_0060801.3
NHDF_7071701.2 3 Dermal Fibroblasts from breast missing skin normal F Gingeras   PromoCell C-14031 BTO:0003185 NHDF_7071701.2
NHEK 3 epidermal keratinocytes ectoderm skin normal U ENCODE   Lonza CC-2501 BTO:0000375 NHEK
NHEM.f_M2 3 Epidermal Melanocytes from two individuals, NHEM.f_M2_5071302.2 and NHEM.f_M2_6022001 from foreskin missing skin normal M Gingeras
Gingeras  		 PromoCell NHEM BTO:0000847 NHEM.f M2
NHEM.f_M2_5071302.2 3 Epidermal Melanocytes (foreskin) missing skin normal M Gingeras   PromoCell C-14042 BTO:0000847 NHEM.f M2 (5071302.2)
NHEM.f_M2_6022001 3 Epidermal Melanocytes (foreskin) missing skin normal M Gingeras   PromoCell C-14042 BTO:0000847 NHEM.f M2 (6022001)
NHEM_M2 3 Epidermal Melanocytes (adult) from two individuals, NHEM_M2_7011001.2 and NHEM_M2_7012303 from cheek / temple missing skin normal B Gingeras
Gingeras  		 PromoCell NHEM BTO:0000847 NHEM M2
NHEM_M2_7011001.2 3 Epidermal Melanocytes (adult) from cheek missing skin normal M Gingeras   PromoCell C-14043 BTO:0000847 NHEM M2 (7011001.2)
NHEM_M2_7012303 3 Epidermal Melanocytes (adult) from temple missing skin normal F Gingeras   PromoCell C-14043 BTO:0000847 NHEM M2 (7012303)
NHLF 3 lung fibroblasts endoderm lung normal U Bernstein
Stam  		 Lonza CC-2512 BTO:0000161 (non-specific) NHLF
NT2-D1 3 malignant pluripotent embryonal carcinoma (NTera-2), "The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line." - ATCC. (PMID: 6694356) inner cell mass testis cancer M ENCODE   ATCC CRL-1973 BTO:0000946 NT2-D1
Olf_neurosphere 3 Human olfactory neurosphere-derived cells from mucosal biopsies   Nasal biopsy normal U Crawford   Alan Mackay-Sim Olf_neurosphere termId BTO:0000961 Olfactory neurosphere
Osteobl 3 osteoblasts (NHOst) mesoderm bone normal U Crawford
Bernstein  		 Lonza CC-2538 BTO:0001593 Osteoblasts
ovcar-3 3 ovarian adenocarcinoma, "the NIH: OVCAR-3 line was established in 1982 by T.C. Hamilton, et al. from the malignant ascites of a patient with progressive adenocarcinoma of the ovary." - ATCC. (PMID: 6604576) mesoderm ovary cancer F Stam   ATCC HTB-161 BTO:0000812 ovcar-3
PANC-1 3 pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays. endoderm pancreas cancer M Myers
Stam  		 ATCC CRL-1469 BTO:0000304 PANC-1
Pancreas_OC 3 Primary frozen pancreas tissue from NCTC donor IDs 09-0144A (Rep B1) and 10-0021A (Rep B2)   pancreas normal M Crawford   NCTC 09-0144A
NCTC 10-0021A		 BTO:0000988 Pancreas OC
PanIsletD 3 dedifferentiated human pancreatic islets from the National Disease Research Interchange (NDRI), same source as PanIslets endoderm pancreas   B Crawford   National Disease Research Interchange PanIsletD BTO:0000991 (non-specific) PanIsletD
PanIslets 3 pancreatic islets from 2 donors, the sources of these primary cells are cadavers from National Disease Research Interchange (NDRI) and another sample isolated as in Bucher, P. et al., Assessment of a novel two-component enzyme preparation for human islet isolation and transplantation. Transplantation 79, 917 (2005) endoderm pancreas normal M Crawford
Lieb  		 Refer to publication or NDRI PanIslets BTO:0000991 (non-specific) PanIslets
PBDE 3 peripheral blood-derived erythroblasts mesoderm blood   M Farnham   Dr. Peggy Farnham at USC PBDE BTO:0000574 (non-specific) PBDE
PBDEFetal 3 peripheral blood-derived erythroblasts from 16-19 week human fetal liver mesoderm liver normal U Farnham   Bouhassira Lab FetalPBDE BTO:0000553 PBDEFetal
PBMC 3 peripheral blood mononuclear cells mesoderm blood   M Farnham   Dr. E.H. Bresnick at UW Madison PBMC BTO:0001025 PBMC
PFSK-1 3 neuroectodermal cell line derived from a cerebral brain tumor, (PMID: 1316433) ectoderm brain cancer M Myers   ATCC CRL-2060 BTO:0000690 (non-specific) PFSK-1
pHTE 3 primary tracheal epithelial cells endoderm epithelium   U Crawford   Dr. Cal Cotton at Case Western Reserve University BTO:0001120 (non-specific) pHTE
Pons_OC 3 Primary frozen pons mid-brain tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3)   pons mid-brain normal M Crawford   NICHD 1104
NICHD 602
NICHD 1442		 BTO:0001101 Pons_OC
PrEC 3 prostate epithelial cell line epithelial prostate normal U Stam   Lonza CC-2555 BTO:0002398 PrEC
ProgFib 3 fibroblasts, Hutchinson-Gilford progeria syndrome (cell line HGPS, HGADFN167, progeria research foundation)   skin   M Crawford   Progeria Research Foundation HGADFN167 BTO:0001255 (non-specific) ProgFib
prostate 3 prostate tissue purchased for CSHL project endoderm prostate   M Gingeras   ATCC Missing BTO:0001129 Prostate
Prostate_OC 3 Primary frozen prostate tissue from NICHD donor IDs 1669 (Rep B1) and 1540 (Rep B2)   prostate normal M Crawford   NICHD 1669
NICHD 1540		 BTO:0001129 Prostate_OC
Psoas_muscle_OC 3 Primary frozen psoas muscle tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1540 (Rep B1), 1863 (Rep B2 FAIRE)   psoas muscle normal B Crawford   NICHD 1104
NICHD 602
NICHD 1442
NICHD 1540
NICHD 1863		 BTO:0001140 Psoas_muscle_OC
Raji 3 B lymphocyte, "The Raji line of lymphoblast-like cells was established by R.J.V. Pulvertaft in 1963 from a Burkitt's lymphoma of the left maxilla of an 11-year-old Black male." - ATCC. (PMID: 14086209) mesoderm blood cancer M Farnham   ATCC CCl-86 BTO:0001154 Raji
RCC_7860 3 renal cell adenocarcinmoma   kidney cancer M Crawford   ATCC CRL-1932 BTO:0000037 RCC 7860
RPMI-7951 3 Human Skin Malignant Melanoma Cells, This is a hyperdiploid human cell line with the modal chromosome number of 49, occurring in 24% of cells. Polyploid cells occurred at 22%, which is high. ectoderm skin cancer F Stam   ATCC HTB-66 BTO:0003508 RPMI-7951
RPTEC 3 renal proximal tubule epithelial cells   epithelium normal U Stam   Lonza CC-2553, CC-2553T225 BTO:0001498 RPTEC
RWPE1 3 prostate epithelial   prostate normal M Crawford   ATCC CRL-11609 BTO:0002397 RWPE1
SAEC 3 small airway epithelial cells endoderm epithelium normal U Stam   Lonza CC-2547 BTO:0002022 (non-specific) SAEC
SH-SY5Y 3 neuroblastoma clonal subline of the neuroepithelioma cell line SK-N-SH from the 1970 bone marrow biopsy of a 4-year-old girl with metastatic neuroblastoma, trisomy of 1q ectoderm brain cancer F Farnham   ATCC CC-2266 BTO:0000793 SH-SY5Y
SK-N-MC 3 neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, "SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines." - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.) ectoderm brain cancer F Myers
Stam  		 ATCC HTB-10 BTO:0002372 (non-specific) SK-N-MC
SK-N-SH 2 neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual. ectoderm brain cancer F Myers   ATCC HTB-11 BTO:0001620 SK-N-SH
SK-N-SH_RA 3 neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.) ectoderm brain cancer F Stam   ATCC HTB-11 BTO:0002372 (non-specific) SK-N-SH (Retinoic Acid)
Skeletal_Muscle_BC 3 skeletal muscle, parental cell type to donors 01-11002 and H12817N mesoderm skeletal muscle normal B Myers   BioChain CP-S12-D1234171-05_A610262
BioChain CP-S10-R1234171-20_A808148
BioChain CP-S13-D1234171-05_B402065
BioChain CP-S10-R1234230-20_A911037		 BTO:0001103 Skeletal Muscle BC
SkMC 3 Skeletal muscle myosatellite cells from two individuals, SkMC_9011302 SkMC_8121902.17 from M. pectoralis / Mm. intercostales missing muscle normal B Gingeras
Gingeras  		 PromoCell SkMC BTO:0002916 SkMC
SKMC 3 skeletal muscle cells mesoderm muscle normal U Stam   Lonza CC-2561 BTO:0001801 (non-specific) SkMC
SkMC_8121902.17 3 Skeletal muscle myosatellite cells from Mm. intercostales missing striated muscle normal M Gingeras   PromoCell C-14060 BTO:0002916 SkMC_8121902.17
SkMC_9011302 3 Skeletal muscle myosatellite cells from M. pectoralis missing striated muscle normal F Gingeras   PromoCell C-14060 BTO:0002916 SkMC_9011302
Small_intestine_OC 3 Primary frozen small intestine tissue from NCTC donor IDs 10-0063A (Rep B1) and 09-0143A (Rep B2)   small intestine normal M Crawford   NCTC 10-0063A
NCTC 09-0143A		 BTO:0000651 Small intestine OC
Spleen_OC 3 Primary frozen spleen tissue from NICHD donor IDs 1863 (Rep B1) and 4548 (Rep B2)   spleen normal F Crawford   NICHD 1863
NICHD 4548		 BTO:0001281 Spleen_OC
Stellate 3 hepatic stellate cells, liver that was perfused with collagenase and sellected for hepatic stellate cells by density gradient endoderm liver normal F Crawford   Dr. Steve Choi at Duke University Stellate BTO:0002316 Stellate
Stomach_BC 3 stomach, parental cell type to donors 01-11002 and H12817N endoderm stomach normal B Myers   BioChain CP-S12-D1234248-05_A808008
BioChain CP-S13-D1234248-05_B402070
BioChain CP-S10-R1234248-20_B402077		 BTO:0001307 Stomach BC
T-47D 3 epithelial cell line derived from a mammary ductal carcinoma.   breast cancer F Stam and Myers   ATCC HTB-133 BTO:0001248 T-47D
T98G 3 fibroblast cell line derived from a glioblastoma multiforme. (PMID: 222778) ectoderm brain cancer M  missing   ATCC CRL-1690 BTO:0001583 T98G
T_cells_CD4+ 3 Parent cell line for T cells CD4+. mesoderm blood unknown B Crawford Stam   Dr. David Randolph at University of Alabama, Birmingham vary BTO:0000782 T cells CD4+
TBEC 3 trachea and bronchial epithelial cells from frush lung tissue provided by National Disease Research Interchange, passage 2 primary, non-immortalized cells, donor was 21 years old endoderm epithelium   M Crawford   National Disease Research Interchange DD009C BTO:0001389 (non-specific) TBEC
Th1 3 primary Th1 T cells mesoderm blood   U Stam   Dr. John Stamatoyannopoulos at UW None (primary pheresis of single normal subject) BTO:0001678 Th1
Th17 3 T helper cells expressing IL-17, primary pheresis of single normal subject mesoderm blood normal B Stam   Dr. John Stamatoyannopoulos at UW Th17 BTO:0002417 Th17
Th1_Wb33676984 3 Th1 cells in vivo isolation mesoderm blood normal donor is Asian, female 26 year old, primary pheresis of single normal subject F Stam   Dr. John Stamatoyannopoulos at UW Wb33676984 BTO:0001678 Th1_Wb33676984
Th1_Wb54553204 3 Th1 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject mesoderm blood normal M Stam   Dr. John Stamatoyannopoulos at UW Wb54553204 BTO:0001678 Th1_Wb54553204
Th2 3 primary Th2 T cells mesoderm blood   U Stam   Dr. John Stamatoyannopoulos at UW None (primary pheresis of single normal subject) BTO:0001679 Th2
Th2_Wb33676984 3 Th2 cells in vivo isolation, donor is Asian, female 26 year old, primary pheresis of single normal subject mesoderm blood normal F Stam   Dr. John Stamatoyannopoulos at UW Wb33676984 BTO:0001679 Th2_Wb33676984
Th2_Wb54553204 3 Th2 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject mesoderm blood normal M Stam   Dr. John Stamatoyannopoulos at UW Wb54553204 BTO:0001679 Th2_Wb54553204
Treg_Wb78495824 3 T regulatory cells in vivo isolation mesoderm blood normal donor is Causasian, female 35 year old, primary pheresis of single normal subject F Stam   Dr. John Stamatoyannopoulos at UW Wb78495824 BTO:0004520 Treg_Wb78495824
Treg_Wb83319432 3 T regulatory cells in vivo isolation, donor is Caucasian, male 28 year old, primary pheresis of single normal subject mesoderm blood normal M Stam   Dr. John Stamatoyannopoulos at UW Wb83319432 BTO:0004520 Treg_Wb83319432
U2OS 3 osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590) mesoderm bone cancer F Farnham   ATCC HTB-96 BTO:0000970 U2OS
U87 3 glioblastoma, astrocytoma, (PMID: 4332744) ectoderm brain cancer M Myers   ATCC HTB-14 BTO:0002036 U87
UCH-1 3 chordoma cell line ectoderm chordoma cancer M Crawford   Chordoma Research Foundation BTO:0001768 UCH-1
Urothelia 3 primary ureter cell culture of urothelial cells derived from a 12 year-old girl and immortalized by transfection with a temperature-sensitive SV-40 large T antigen gene   urothelium normal F Crawford   Dr. D Sens at University of N. Dakota Urothelia BTO:0001245 Urothelia
WERI-Rb-1 3 retinoblastoma (PMID: 844036) ectoderm eye cancer F Stam   ATCC HTB-169 BTO:0001178 (non-specific) WERI-Rb-1
WI-38 3 embryonic lung fibroblast cells, hTERT immortalized, includes Raf1 construct endoderm embryonic lung normal F Stam   Dr. Carl Mann, SBIGeM WI-38 BTO:0001958 WI-38

Total = 356