Human methylome studies Tracks
 
Human methylome studies tracks

Display mode:   

 All
Common  Common methbase tracks for the hg38 assembly  
DRP001914  Omics catalogue of lung adenocarcinoma cell lines [cell line]  
DRP003407  Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing [DRS039492, EpiLC, spermatogonia]  
DRP004736  Generation of human oogonia from induced pluripotent stem cells in vitro [PGCLC, aggregate cultured PGCLC, iMeLC, iPSC]  
DRP006124  DNA methylome analyses and expression analysis for malignant glioma harbouring H3F3A gene mutation [glioma]  
DRP007001  Development of long-read whole genome methylation sequencing method using the enzymatic base conversion and the nanopore sequencing [DRS173523, DRS173524]  
DRP007963  Whole genome bisulfite sequencing of colorectal cancer [metastatic cancerous tissue obtained from distant lymph node metastasis, metastatic cancerous tissue obtained from hepatic metastasis, metastatic cancerous tissue obtained from lung metastasis, primary cancerous tissue]  
DRP008243  Transcriptome and methylome analyses of trophoblast stem-like cells derived from primed human embryonic stem cells [TSLprimed]  
DRP012061  Epigenetic regulation by nitrosative stress as a potential mechanism of long COVID [Small airway epithelial cell]  
ERP004221  Genome-wide methylome profiling of normal breast and breast tumors [Breast, human breast cancer]  
ERP005229  Whole-genome Bisulfite Sequencing for Methylation Analysis of human monocytes [ERS420117]  
ERP008742  Germ_cell_methylation_dynamics [308-D5_TE_Embryo_1, 308-D5_TE_Embryo_2, 693-D6_TE_Embryo_2, A3_mPGCLC1, BS treated DNA; PBAT library, C3_mPGCLC2, D2_mPGCLC1, D3_mPGCLC2, E3_mPGCLC2, F1_hPGCLC1, F2_mPGCLC1, F3_mPGCLC2, G2_mPGCLC1, G3_mPGCLC2, H3_mPGCLC2, P11(4), P14(2), P8(3), PBAT libraries of human ESCs H9, PBAT libraries of mouse ESCs E14 G7, PRGp8_4, Passage_10_Sort_2, Passage_10_Sort_3, Passage_10_Sort_4, S6EOSKSR_1, S6EOSKSR_3, S6EOSp15_1, S6EOSp15_2, S6EOSp5_3, S6EOSp9_1, S6EOSp9_2, S6EOSp9_3, hES1, hES2, hES3, hEpiLC_2016214_2, hEpiLC_201635, hKSR2, hKSR3, mEpiLC_E14_d1_1, mEpiLC_E14_d2_2]  
ERP009555  Effects of HIST1H2ac knockdown on the DNA methylation landscape of breast cancer cell line MCF-7 [ERS661357]  
ERP010942  We present the first genome-scale analysis of the effect of CpG methylation on DNA-binding of TFs. [ERS1642969, ERS1642970, ERS1642971, ERS1642972, ERS1642973, ERS1642976, embryo]  
ERP011276  5Aza and TSA treatment of MCF7 cells (BS-seq) [Breast]  
ERP014223  DNA methylation profiling of human naive embryonic stem cells [embryo]  
ERP018009  Base resolution maps of mutations, 5-methylcytosine and 5-hydroxymethylcytosine, and transcriptome of blood, tumour and margin samples from a glioblastoma multiforme patient [brain]  
ERP106410  An integrated genomic analysis of L1 retrotransposon mosaicism in the brain [hippocampus]  
ERP107813  Bisulfite-seq of synovial biopsies from rheumatoid arthritis patients [synovial membrane]  
ERP109610  Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps [colon]  
ERP109664  Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps, dataset 2 [colon]  
ERP109780  Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the AML cell line HL-60/S4 [ERS6262761, ERS6262762, ERS6262763]  
ERP110208  Whole genome methylation analysis of sperm and blood from young and old men. [blood, sperm]  
ERP110315  Single molecule sequencing and assembly of flow sorted Y chromosome from HG02982 [lymphoblastoid cell line]  
ERP114912  Genome-wide Analysis of the Nucleosome Landscape in Individuals with Coffin-Siris Syndrome [ERS3374392, ERS3374393, ERS3374394, ERS3374395, ERS3374396, ERS3374397, ERS3374398, ERS3374399]  
ERP117337  Whole genome DNA methylation analysis of sperm DNA from normozoospermic and oligoasthenoteratozoospermic men [sperm]  
ERP122363  No evidence for intervention-associated DNA methylation changes in monocytes of patients with posttraumatic stress disorder or anorexia nervosa [ERS4676997, ERS4676998, ERS4676999, ERS4677000, ERS4677001, ERS4677002, ERS4677003, ERS4677004, ERS4677005, ERS4677006]  
ERP122802  Whole genome DNA methylation analysis of human testicular germ cells [sperm]  
ERP123063  Whole genome DNA methylation analysis of human embryonic stem cells [embryonic stem cell]  
ERP127251  Single Cell Multi-Omics of Human Preimplantation Embryos Demonstrates Susceptibility to Excess Glucocorticoid Exposure(BSseq part) [whole organism]  
ERP129475  DNA Methylation signature in mononuclear cells and proinflammatory cytokines in Meniere Disease [Blood]  
ERP130693  Performance comparison and in-silico harmonisation of commercial platforms for DNA methylome analysis by targeted bisulfite sequencing [ERS7285688, ERS7285691, ERS7285700]  
ERP135121  Whole Genome Bisulfite Sequencing (WGBS) of the SH-SY5Y human neuroblastoma cell line [bone marrow]  
ERP139499  Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog) [liver]  
ERP144942  Validation of differentially methylated DNA regions in colorectal precancerous lesions. [colon]  
SRP000941  UCSD Human Reference Epigenome Mapping Project [Adipose, Adipose Tissue, Adrenal Gland, Aorta, Bladder, Esophagus, Gastric, IMR90 cells, Left Ventricle, Liver, Lung, Ovary, Pancreas, Psoas Muscle, Right Atrium, Right Ventricle, SRS004212, SRS004213, SRS116479, SRS116480, SRS172880, SRS172881, SRS184456, SRS184459, SRS184460, SRS184461, SRS267132, SRS267133, SRS287638, SRS287639, Sigmoid Colon, Small Intestine, Spleen, Thymus]  
SRP000996  BI Human Reference Epigenome Mapping Project [CD184+ endoderm cultured cells, CD19, CD34 Primary Cells, Fetal Adrenal, Fetal Heart, Fetal Muscle, Leg, Fetal Muscle, Trunk, Fetal Placenta, Fetal Spinal Cord, Fetal Stomach, Fetal Thymus, IMR90 cells, SRS309498, SRS309499, SRS360524, SRS360531, SRS406770, SRS406771, adult CD14, adult CD3, adult CD56]  
SRP001371  University of Washington Human Reference Epigenome Mapping Project [Fetal Intestine, Large, Fetal Intestine, Small]  
SRP001720  Dynamic Changes in the Human Methylome During Differentiation [Embryonic stem cells, Fibroblasts derived from human embryonic stem cells, Newborn Human Foreskin Fibroblasts]  
SRP003529  Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells [SRS114877, SRS114889, SRS114890, SRS114891, SRS114892, SRS114893, SRS114894, SRS114895, SRS152868, SRS153033]  
SRP006728  Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC) [breast cancer cells]  
SRP006774  Increased methylation variation in epigenetic domains across cancer types [SRS193045, SRS193046, SRS193047, SRS193048, SRS193049, SRS193050, SRS193051, SRS193052]  
SRP007400  Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates [Sperm]  
SRP007820  The DNA methylomes of a newborn and a centenarian [Peripheral blood, Umbilical cord blood, peripheral blood]  
SRP008144  Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment [B cell, HSPC, Neutrohphil, umbilical cord blood]  
SRP008337  Role of DNMT3B in the regulation of early neural and neural crest specifiers [H9 cells, hESC]  
SRP011746  Ultra-low-input, tagmentation-based whole genome bisulfite sequencing [SRS302004]  
SRP011945  Base Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome [ES cells, mouse embryonic stem cells]  
SRP012161  Evolutionary Significance of DNA Methylation in Human and Chimpanzee Brains [prefrontal cortex]  
SRP012412  GSE59395: Genome-wide map of regulatory interactions in the human genome [adrenal gland, body of pancreas, bone marrow, cell line, esophagus muscularis mucosa, esophagus squamous epithelium, fibroblast of arm, gastroesophageal sphincter, heart left ventricle, hepatocyte, lower leg skin, mammary epithelial cell, motor neuron, ovary, prostate gland, right lobe of liver, smooth muscle cell, spleen, stomach, suprapubic skin, testis, thyroid gland, tibial nerve, transverse colon, upper lobe of left lung]  
SRP012499  Epigenetic alterations of a DNMT3B-mutant ICF patient at base-pair resolution [blood]  
SRP012560  GSE34399: Replication Timing by Repli-seq from ENCODE/University of Washington [H1-hESC, skeletal muscle myoblast]  
SRP013816  SINE transcription by RNA polymerase III is suppressed by histone methylation but not DNA methylation [HeLa-S3]  
SRP014634  Examination of four human tissue samples by MethylC-seq [placenta from full-term pregnancy]  
SRP014898  Human Sperm Epigenomes and Transcriptomes Reveal Novel Features of Enhancers, Sex Chromosomes, piRNAs, Gametogenesis, and Inherited Small RNAs (Bisulfite-Seq) [sperm]  
SRP015704  Genome-wide mapping of nucleosome positioning and DNA methylation within Individual DNA molecules [glioblastoma, lung fiboblast cells]  
SRP015742  GSE40832: Whole Genome Bisulfite Sequencing by ENCODE/HAIB [GM12878, inner cell mass]  
SRP019232  Whole genome bisulfite-seq of two healthy males. [Hair follicle, Peripheral blood lymphocyte]  
SRP021039  Selective demethylation and altered gene expression are associated with ICF Syndrome in human induced pluripotent stem cells and mesenchymal stem cells [induced pluripotent stem cell]  
SRP021479  Genome-wide DNA methylation aberrations in human atherosclerosis (sequencing) [carotid tissue]  
SRP021846  Age-related methylation changes are associated with altered transcriptional circuitry [Methyl-seq] [skin (epidermal suction blister samples)]  
SRP022041  Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies [Bisulfite-Seq] [Normal Buccal Cells]  
SRP022149  Genome-wide parent-of-origin DNA methylation analysis [Methyl-seq] [normal brain tissue, normal liver tissue, normal placenta tissue]  
SRP022160  Whole-genome analysis of 5-hydroxymethylcytosines and 5-methylcytosines at base resolution in human brain [Brain prefrontal cortex]  
SRP022182  Homo sapiens Epigenomics [SRS419301, SRS419383]  
SRP026048  Global epigenomic reconfiguration during mammalian brain development [brain (cerebral cortex), brain (dorsal prefrontal cortex), brain (frontal cortex), brain (middle frontal gyrus), embryonic stem cells]  
SRP026604  Genome-wide methylation maps for Proliferating and Senescent cells [cells bypassing senescence, proliferating cells, senescent cells]  
SRP028577  Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization [Bisulfite-seq] [Activated B-cells, Activated B-cells_day 16, Activated B-cells_week 3, EBV transformed B-cells, EBV transformed B-cells_16 days post infection, EBV transformed B-cells_3 weeks post infection, Resting B-cells]  
SRP028600  Charting a dynamic DNA methylation landscape of the human genome [cell line, cortex, primary, primary tumor]  
SRP028804  The DNA methylation landscape of human early embryos [embryo]  
SRP029519  Induction of sarcomas by mutant IDH2 [10T isogenic cell line with IDH2 mutation]  
SRP032354  whole-genome bisulfite sequencing (BS-seq) of HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1) [embryonic semi-differentiated kidley cells, modified HEK293 cell overexpressing BAHD1]  
SRP033201  Homo sapiens Genome sequencing [SRS504842]  
SRP033252  Genome-wide profiling of the functional DNA methylation landscape at base-pair resolution in human cancer types [BS-seq] [Blood (B-cells), Brain, Brain (grey matter), Brain (white matter), Breast, Colon, Liver, Lung, Placenta, Prostate]  
SRP033283  The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4 (Bisulfite-Seq) [breast cancer cell line]  
SRP033491  China_type_2_diebetes_family [SRS510685, SRS510686, SRS510687]  
SRP033504  Epigenome analysis of human epidermal samples with aging and sun exposure [dermis]  
SRP035642  The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts [Whole genome bisulfite sequencing] [skin]  
SRP037971  Genome wide profiling of MBD2 binding [MCF-7 WT]  
SRP038103  Genome-wide methylation maps for untreated and Aza treated AML3 cells [AML3]  
SRP041025  WGBS data of pediatric B-cell acute leukemias [bone marrow / peripheral blood]  
SRP041718  Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome [primary]  
SRP041720  Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human neurological disorders (Bisulfite-Seq) [brain Grey matter]  
SRP041822  Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels [Bisulfite-Seq] [Lymphoblastoid Cell Line]  
SRP041828  Comparison of nucleosome occupancy and chromatin states between normal and cancer cell lines [HMEC, MCF7, PC3, PrEC]  
SRP041984  Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [fibroblast, pluripotent]  
SRP043461  The effects of the global loss of DNA methylation on the functional cancer epigenome (Bisulfite-seq) [DKO1 cells, HCT116 cells]  
SRP045269  Global loss of DNA methylation uncovers intronic enhancers in genes [human colorectal cancer cell line]  
SRP045902  Resetting Transcription Factor Control Circuitry Towards Ground State Pluripotency In Human [embryonic stem cells]  
SRP047086  A public-private-academic consortium, Genome-in-a-Bottle (GIAB), hosted by NIST to develop reference materials and standards for clinical sequencing [B-Lymphocyte]  
SRP048761  Dissecting neural differentiation regulatory networks through epigenetic footprinting [ES-derived neural progenitor cells]  
SRP048844  Genome-wide profiling of DNA methylation at single-base resolution based on MeDIP-bisulfite high-throughput sequencing and ridge regression (MethyC + MeDIP) [ovarian epithelial]  
SRP048896  Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human acute myeloid leukemia cell lines. [AML]  
SRP049651  Large-scale epigenetic reprogramming is punctuated late during the evolution of pancreatic cancer progression [BS-Seq] [Normal Pancreas, Patient A38, Primary Tumor, liver metastasis, lung metastasis, peritoneal metastasis, primary tumor]  
SRP049710  Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer [matched normal, tumor]  
SRP049782  Targeted disruption of DNMT1, 3A and 3B in human embryonic stem cells [WGBS] [HUES64 DNMT3A KO, HUES64 DNMT3A/3B DKO, HUES64 DNMT3B KO]  
SRP049936  DNA methylation in mammalian placentas [cerebrum, cordblood, extraembryonic membrane, placenta, trophoblasts]  
SRP049985  Whole Genome Bisulfite Sequencing (WGBS) of cKIT+ sorted cells from 57-137 day old fetal testes and ovaries. [cKIT+ FACS sort]  
SRP050499  The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells [Primordial germ cells, embryo]  
SRP051366  Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (Bisulfite-Seq) [Monocyte-derived dendritic cells]  
SRP051367  Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (TAB-Seq) [Monocyte-derived dendritic cells]  
SRP052842  Pleiotropic Analysis of Lung Cancer and Blood Triglycerides [purified AT2 cells]  
SRP055494  BLUEPRINT methylome of the HapMap cell line GM18507 (Coriell cell line NA18507) [modified B cell (lymphoblastoid)]  
SRP056911  DNA methylation in the placentas of typically developing and autistic children [placenta]  
SRP057098  A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development [gonad]  
SRP057450  A novel bivalent chromatin state exists at enhancers [HCT116]  
SRP058102  Analysis of DNA Methylation in replication and cell cycle arrest. [Primary dermal fibroblasts]  
SRP059289  Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [DNA methylation] [hepatoctes induced by differentiation of hiMEPs, hiMEPs derived from GECs by reprogramming, stomach]  
SRP059313  UPF : Methylation_primates [blood]  
SRP059433  Gender Differences in Global but not Targeted Demethylation in iPSC Reprogramming [BS seq AIDKO MEF1, BS seq ESC 1, BS seq ESC 2, BS seq ESC 3, BS seq MALE MEF 1, BS seq MALE MEF 2, BS seq MALE MEF 3, BS seq MEF 1, BS seq MEF 2, BS seq MEF 3, BS seq d6 SSEA1 positive 1, BS seq d6 SSEA1 positive 2, BS seq d6 SSEA1 positive 3, BS seq d6 Thy1 positive 1, BS seq d6 Thy1 positive 2, BS seq d6 Thy1 positive 3, Fibroblast, Reprogramming fibroblast, iPSC]  
SRP059772  Whole genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver [oxBS-Seq and BS-Seq] [liver, lung]  
SRP065930  HX1 [Blood]  
SRP067779  Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer [NOMe-seq] [LNCaP clone FGC (ATCC CRL-1740). Androgen-sensitive human prostate adenocarcinoma cells, Primary prostate epithelial cells. Cambrex Bio Science Cat. No. CC-2555]  
SRP068579  Reversion to naïve human pluripotency creates a new methylation landscape devoid of blastocyst or germline memory [EpiLC, hESC]  
SRP071771  Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tissue-of-origin mapping from plasma DNA [WGBS] [liver, skeletal muscle]  
SRP071891  Functional Haploid Human Oocytes Generated from Polar Body Genomes (Bisulfite-Seq) [Polar Body Nuclear Transfer, embryonic stem cell]  
SRP072071  study of brain methylation [brain, pre-frontal cortex]  
SRP072075  Epigenomic analysis of lymphocytes and fibroblasts [foreskin fibroblasts, sorted CD4+ T cells]  
SRP072078  epigenomic analysis of lung and liver [liver, lung]  
SRP072141  stem cell epigenomics [H1 stem cells]  
SRP074177  Nucleation of DNA Repair Factors by FOXA1 Links DNA Demethylation to Transcriptional Pioneering [MCF-7 cells (siFOXA1- transfected), MCF-7 cells (siNS- transfected)]  
SRP074598  Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos [Heart, ICM, Sperm, TE, Villus]  
SRP074852  DNMT and HDAC inhibitors globally induce cryptic TSSs encoded in long terminal repeats [NCI-H1299-EGFP/NEO]  
SRP075292  Cumulative Impact of Polychlorinated Biphenyl and Large Chromosomal Duplications on DNA Methylation, Chromatin, and Expression of Autism Candidate Genes. [Brain, human neuroblastoma cell line, human neuroblastoma cell line with extra copy of part of maternal chr15, human neuroblastoma cell line with extra copy of part of maternal chr15 and part of chr22]  
SRP075562  ZBTB33 (Kaiso) Differentially Regulates Cell Cycle Through cyclin D1 and cyclin E1 in a Cell Specific Manner [BiSulfite-seq] [HeLa_S3]  
SRP075876  Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain [brain, human embryonic stem cell line]  
SRP075910  Global delay in nascent strand DNA methylation [cell line, embryonic stem cell]  
SRP076893  “Same Difference”: Comprehensive evaluation of four DNA methylation measurement platforms [lung fibroblast]  
SRP080340  Evidence That Three Classes of Methylomes Specific for Stem, Somatic and Transformed Cells Are Set by Three Independent Mechanisms (Methyl-Seq) [basophilic erythroblasts]  
SRP080893  Active and senescent human hematopoietic stem and progenitor cell whole genome bisulfite sequencing [DNA]  
SRP082156  Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [WGBS] [Prostate]  
SRP085035  Molecular Criteria for Defining the Naive Human Pluripotent State [methylation profiling] [Naive human embryonic stem cells, Primed human embryonic stem cells]  
SRP089722  Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling [WGBS] [primary prostate epithelial cells (PrEC), prostate cancer cell line (LNCaP)]  
SRP090105  The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [WGBS_Hs] [retina]  
SRP092113  Splinted Ligation Adapter Tagging, a novel library preparation for whole genome bisulphite sequencing [ALL cell line, lymphoblastoid cell line]  
SRP092462  HUES8 TET1/2/3 TKO hESCs [Human Embryonic Stem Cells]  
SRP093254  Whole Genome Bisulfite Sequencing of HUES8 WT and HUES8 TET1/2/3 TKO hESCs [human embryonic stem cells]  
SRP093764  Epigenetic resetting of human pluripotency [ESC]  
SRP094554  A Molecular signature for Delayed Graft Function [BS-Seq] [Kidney]  
SRP094721  Epigenomic landscapes of hESC-derived neural rosettes [neural stem cells]  
SRP094960  Genomic profiling of human spermatogonial stem cells [WGBS] [testis]  
SRP095006  Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA Methylation by dCas9 methyltransferases (CRISPRme) [WGBS] [Human embryonic kidney cell line]  
SRP096028  Dental Pulp Stem Cells Model Early Life and Imprinted DNA Methylation Patterns. [Dental Pulp Stem Cells, LUHMES]  
SRP097759  S-adenosylhomocysteine hydrolase participates in DNA methylation inheritance [kidney]  
SRP098648  Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA [BiSulfite-seq] [Adult Brain Frontal Lobe, LNCaP clone]  
SRP099603  Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the methylome [Postmortem brain tissue]  
SRP100067  Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers [purified primary alveolar epithelial type 2 cells]  
SRP101887  Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability [Bisulfite-Seq] [anterior cingulate cortex (BA24), hippocampus (HC), nucleus accumbens (NAcc), prefrontal cortex (BA9)]  
SRP102997  Genome-wide nucleosome occupancy and DNA methylation profiling in endometriosis cells [hTERT immortalized endometriosis cells]  
SRP103077  Mapping DNA methylation and CTCF/cohesin occupancy on nascent chromatin and DNMT-targeted nascent chromatin [human embryonic stem cells, mouse embryonic stem cells]  
SRP103794  Methylation DNA mediated KLF4 binding activity in glioblastoma cells [Brain]  
SRP103839  Single-cell Multi-omics Sequencing and Analyses of Human Colorectal Cancer [CRC, HeLa contaminant]  
SRP103943  DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A [WGBS] [Human epithelial HEK 293T cells]  
SRP104141  NicE-seq: high resolution open chromatin profiling [colorectal]  
SRP104305  5hmC dynamically correlated with enhancer''s activities during hES-to-Pancreatic endoderm cell differentiation (Bisulfite-Seq) [ES cells]  
SRP104789  Culture of Human embryonic stem cells in different media [Embryonic Stem Cells]  
SRP106910  Human memory CD8 T-cell effector-potential is epigenetically preserved during in vivo homeostasis [HuTCM, HuTEM, HuTN, HuTSCM, TCMD204, TEMD203, TND201, TSD202]  
SRP107857  TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency [naive embryonic stem cell, primed embryonic stem cell]  
SRP107883  Archaic and modern bone DNA methylation maps from the Neanderthal, Denisovan, modern human and chimpanzee [Bone]  
SRP113417  Chromatin and Transcriptional Dynamics in Adult Germline Stem Cells and Mammalian Spermatogenesis [Spermatogonia (Thy1+), Testis, testis]  
SRP115074  Lack of Repressive Capacity of Human Promoter DNA Methylation identified through Genome-Wide Epigenomic Manipulation [human brest cancer cell line]  
SRP116948  Whole genome bisulphite sequencing using the Illumina X system [Bisulfite-Seq] [EBV-transformed lymphoblastoid cell line, Fetal lung fibroblast]  
SRP117084  Transcription elongation regulates genome 3D structure [monocyte derived macrophages (MDM)]  
SRP117159  Homo sapiens cultivar:PLC/PRF/5 Raw sequence reads [liver]  
SRP119706  DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation [WGBS_Hs] [adjacent benign normal prostate, prostate tumor]  
SRP124518  UBE3A-mediated regulation of imprinted genes and epigenome-wide marks in human neurons [chromosome duplication model of Dup15q syndrome, neuronal cell line]  
SRP125826  Intervals of unmethylated DNA spatially co-segregate in cis and in trans [WGBS] [Human Erythroid Progenitor Cells]  
SRP125973  A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs [human cervical cancer cell line]  
SRP125992  Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors [fetal-derived neural progenitor cells (sai)]  
SRP126139  G-quadruplex structures moulds the DNA methylome [cell line]  
SRP126677  Genome-wide profiling at single-nucleotide resolution of brain cell types in schizophrenia [WGBS] [brain]  
SRP126972  Distinct Epigenetic Subtypes Are Linked to Disease Progression in Low-Risk MDS [Peripheral blood (PB) cells]  
SRP127273  Scalable and efficient single-cell DNA methylation sequencing by combinatorial indexing. [Embryonic Kidney; Blood; Skin]  
SRP127667  Epigenetic marks and nuclear transcriptomes of cardiac myocytes [heart, left ventricle]  
SRP128919  DNA methylation in hESC derived brain organoids and iPSC derived neurons, astrocytes and neural progenitors [whole organoid]  
SRP130768  Homo sapiens bisulfite and mRNA sequencing of blood T cells and LCM collected lung cells [Blood, Lung]  
SRP130992  Genome-wide Methylation in Cordblood CD4+ Cells from Newborns Exposed vs. Unexposed to Maternal Tobacco Smoke During Pregnancy [Cord blood CD4+ cells]  
SRP131087  An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells [BiSulfite-seq] [Lung, Ovarian]  
SRP131112  Endurance training remodels sperm-borne small RNA expression and methylation at neurological gene hotspots [RRBS] [semen]  
SRP131790  Whole Genome Bisulfite Sequencing of Autism and Control Human BA9 Cortex [dorsal lateral prefrontal cortex]  
SRP131900  Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia [WGBS] [ALL xenograft cells]  
SRP132292  Genetic determinants and epigenetic effects of pioneer factor binding [WGBS] [immortalized BJ foreskin fibroblast cell line]  
SRP132785  Active BRAF-V600E is the key player in generation of a sessile serrated polyp-specific DNA methylation profile (WGBS data set) [Blood, colon]  
SRP133910  Homo sapiens Raw sequence reads [Blood, peripheral blood]  
SRP133941  Longitudinal Personal DNA Methylome Dynamics in a Human with a Chronic Condition [Peripheral Blood Mononuclear Cells]  
SRP133999  Developmental origins define epigenomic differences between subcutaneous and visceral adipocytes [Bisulfite-Seq] [Blood, Subcutaneous Adipose, Visceral Adipose]  
SRP136499  A genomic study of the contribution of DNA methylation to regulatory evolution in primates [heart, heart (later reclassified as liver), kidney, liver, lung]  
SRP144098  DNMT3B maintains mCA landscape and regulates mCG status of bivalent promoters in human embryonic stem cells [human embryonic stem cell]  
SRP144312  Widespread transposable element-driven oncogene expression in cancers [lung cancer cell line]  
SRP148683  Comparison of transcriptome profiles of human embryo cultured in either closed or standard incubator [Preimplantation embryo]  
SRP151496  Generation of FOXO3 engineered human stem cells with enhanced efficacy and safety [Human ECs, Human MSCs, Human TransMSCs, Human VSMCs]  
SRP155006  Epigenomic signatures in liver and blood of Wilson disease patients include hypermethylation of liver-specific enhancers [liver, whole blood]  
SRP156136  MethMotif: An integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles [colon, spleen]  
SRP158279  Epigenetic reprogramming at estrogen-receptor binding sites alters the 3D chromatin landscape in endocrine resistant breast cancer [WGBS] [breast cancer cells]  
SRP158409  H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes [C3H embryo-derived mesenchymal progenitor cells, C57BL/6 x 129S4/SvJae F1 embryo-derived embryonic stem cells, Patient-derived head and neck squamous cell carcinoma cell line]  
SRP158894  Optimization of the input amount of library for whole-genome bisulfite sequencing on HiSeq X Ten [lung]  
SRP158895  Comparison of methylome data obtained with rPBAT and tPBAT. [lung]  
SRP158940  N6-methyladenine DNA Modification in Glioblastoma [ChIP-seq, BiSulfite-seq, DIP-seq] [Patient Derived Glioblastoma Stem Cell]  
SRP161745  Human retinal pigment epithelium [Cultured retinal pigment epithelum, eye tissue]  
SRP161783  Whole Genome Bisulfite Sequencing of Rett Syndrome and Control Human BA9 Cortex [brain]  
SRP162996  Very long intergenic non-coding RNA transcripts and expression profiles are associated to specific childhood acute lymphoblastic leukemia subtypes [CD10+ CD19+ Cord blood, Pre-B t(12;21) [ETV6-RUNX1] acute lymphoblastic leukemia]  
SRP163251  Rates of acquisition of de novo mutations in human pluripotent stem cells under different culture conditions [PSC]  
SRP167041  Homo sapiens Epigenomics [breast, plasma]  
SRP168427  Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart [embryonic heart]  
SRP170543  Impaired DNA methylation in oocytes with a mutation in KHDC3L causing recurrent hydatidiform mole [embryo day 6]  
SRP174219  Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer [Bisulfite-Seq] [Breast]  
SRP175163  Loss of hydroxymethylcytosine is an independent adverse prognostic factor in clear cell Renal Cell Carcinoma (ccRCC) and can be abrogated by ascorbic acid mediated TET activation [786-O]  
SRP185639  DNMT3B has oncogenic activity but evidence suggests that it does not promote CIMP nor cooperate with activated BRAFV600E in human intestinal cancer. (WGBS) [Human Fetal Lung Fibroblasts]  
SRP186015  Study of DNA methylation pattern in single basepair resolution in the human dopaminergic neurons [LUHMES-derived neurons]  
SRP186275  Bisulfite-seq profiling of the human neutrophil genome during PMA- and E. coli encounter-induced activation [peripheral blood]  
SRP186642  Genome-wide methyl-cytosine competition by DNMT and TET [ESCs, EpiSCs, In vitro derived motor neurons, embryonic stem cell, embryonic stem cells]  
SRP187153  Comparison of methylome data generated with HiSeq X Ten and NovaSeq [IMR-90 cell]  
SRP192966  Gene expression, methylome and splicing of THP-1 monocytic cells and THP-1-derived macrophage [Monocytic cell line]  
SRP193115  ATAC-Me captures spatiotemporal dynamics of DNA methylation across the chromatin accessible genome [THP-1 Monocyte]  
SRP193431  Early detection of lung cancer by deep methylation sequencing of circulating tumor DNA [Plasma]  
SRP193843  DNMT1 drives 4D genome rewiring during oncogene induced senescence [WI-38hTERT/GFP-RAF1-ER]  
SRP194341  Whole-exome, transcriptome and epigenome data for homo sapiens from normal to dysplasia to colorectal cancer [Colon]  
SRP198282  Hammer-seq to measure kinetics of DNA methylation maintenance in HeLa cells [cervix, inner cell mass]  
SRP198624  Whole genome bisulfite sequencing of esophagus squamous cell carcinoma [Esophagus]  
SRP199025  Molecular mechanism of KCNJ5 gene hotspot mutation in adrenal aldosteronoma [adrenal gland]  
SRP199200  CATACOMB: an endogenous inducible gene that antagonizes H3K27 methylation activity of Polycomb Repressive complex 2 via a H3K27M-like mechanism [HEK-293T]  
SRP213117  Single-cell transcriptome analysis of uniparental embryos reveals parent-of-origin effects on human preimplantation development [methylation] [embryo]  
SRP213665  The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A [HEK293T_WGBS] [HEK293T]  
SRP215940  The DNA methylomes of hyper-IgM syndrome type 2 B cells provide insights into the roles of activation-induced deaminase prior to the germinal center reaction [naive b cell, non-class-switched memory b cells]  
SRP217135  Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing [WGBS] [white blood cells, whole blood]  
SRP217139  Lactate mediated epigenetic reprogramming during cancer associated fibroblast formation [CAF, MSC]  
SRP219798  Regulation of DNA Methylation at Enhancers by TET2 Finetunes Gene Transcription in ERa-Positive Breast Cancer Cells [MCF7 cells]  
SRP220230  Human, Chimpanzee, Gorilla, Orangutan, Macaque Epigenomics [LCL]  
SRP220467  Human embryonic stem cell-derived organoidal retinoblastoma reveals cancerous origin and therapeutic target [human Rb organoids, retina]  
SRP221227  Persistent epigenetic memory impedes rescue of the telomeric phenotype in human ICF iPSCs following DNMT3B correction [iPSCs]  
SRP223055  Tibetan humans Raw sequence reads [blood]  
SRP223612  Whole Genome Bisulfite sequencing: Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs [bladder cell line, blood, bone marrow, brain, breast (primary tissue), breast cell line, cell line, liver, lymph node, placenta, placenta, maternal]  
SRP224808  Whole genome bisulfite sequencing of human spermatozoa reveals differentially methylated patterns from type 2 diabetic patients [semen]  
SRP226234  An ExtendedCulture System that Supports Human Primordial Germ Cell-Like Cells Survival and Initiation of DNA Methylation Erasure [hESCs]  
SRP229996  Stem and effector CD8 T-cells from human cancers [Blood, Kidney tumor]  
SRP230221  Chromatin dynamics reveal circadian control of human in vitro islet maturation [WGBS] [Primary adult alpha cell, Primary adult beta cell, hPSC-derived beta cell, hPSC-derived definitive endoderm, hPSC-derived endocrine progenitor, hPSC-derived pancreatic progenitor 1, hPSC-derived pancreatic progenitor 2, hPSC-derived poly-hormonal cell]  
SRP230618  Differential DNA methylation profiles of HS ILAE type 1 in human temporal lobe epilepsy [Brain; Hippocampus]  
SRP230793  Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes [umbilical cord blood]  
SRP233253  Comparison of EM-seq and WGBS results [B-Lymphocyte, lung, plasma]  
SRP237955  Molecular atlas of fetal and adult human liver sinusoidal endothelial cells: a F8 secreting cell [methylation III] [Human hepatic sinusoidal endothelial cells]  
SRP238023  Reliable tumor detection using cerebrospinal fluid cell-free DNA methylomes in pediatric medulloblastoma [cerebellum, cerebrospnial fluid from Hydrocephalus patient, cerebrospnial fluid from pediatric medullablastoma patient, pediatric medulloblastoma tumr tissue]  
SRP239226  Principles of Signalling Pathway Modulation for Enhancing Human Naïve Pluripotency Induction [WGBS] [human embryonic stem cells]  
SRP241842  REH MultiOmics [B cell precursor leukemia]  
SRP246939  Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes (WGBS) [HAART HIV TN CD8 T cells, Polyclonal Naive CD8 T cell HD, Polyclonal T1D Naive CD8 T cells, Polyclonal TCM CD8 T cells, Polyclonal TEM CD8 T cells, Polyclonal TSCM CD8 T cells, Tetramer+ CD8 T cells, Tetramer+ HAART CD8 T cells, Tetramer+ T1D CD8 T cells]  
SRP250803  Genome-wide R-loop landscapes during epigenetic programming and reprogramming [Embryonic stem cells, Induced pluripotent stem cells, Mesenchymal stem cell, Neural stem cells, Vascular endothelial cells, Vascular smooth muscle cells]  
SRP251688  Signalling networks constructed by integrative analysis of multi-omics in peripheral blood mononuclear cells in systemic lupus erythematous patients [PBMCs]  
SRP253848  LiBis: An ultrasensitive alignment method for low-input bisulfite sequencing [Blood, Tumor]  
SRP253922  Long-term expansion with germline potential of human primordial germ cell-like cells in vitro [Bisulfite-seq] [iPSC, ovary]  
SRP254660  H3K27M in Gliomas Causes a One-step Decrease in H3K27 Methylation and Reduced Spreading Within the Constraints of H3K36 Methylation [WGBS] [cell line]  
SRP259185  Multi-omics analysis reveals divergent epigenetic regulation of gene expression and drivers of esophageal squamous cell carcinoma (WGBS) [adjacent normal esophageal tissue, esophageal squamouse carcinoma]  
SRP259369  Epigenome Dysregulation Resulting from NSD1 mutation in Head and Neck Squamous Cell Carcinoma [Patient-derived head and neck squamous cell carcinoma cell line]  
SRP260840  Naïve human embryonic stem cells can give rise to cells with trophoblast-like transcriptome and methylome [Bisulfite-Seq] [Transdifferentiated human trophoblast stem cells, embryonic stem cells, trophoblast stem cells]  
SRP261501  Tissue-Biased Expansion of DNMT3A-Mutant Clones Associated with Conserved Epigenetic Alterations [umbilical cord]  
SRP261643  Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity [In vitro differentiated AT1-like cells, purified primary AT2 cells]  
SRP265926  2-hydroxyglutarate drives whole-genome hypermethylation in kidney cancer cells with inactivated VHL [VHL inactivated, clone12, VHL inactivated, clone30, VHL inactivated, clone44, cell line, clone12, exogenous wildtype VHL reintroduced, clone30, exogenous wildtype VHL reintroduced, clone44, exogenous wildtype VHL reintroduced]  
SRP266187  Non-CG methylation and multiple epigenetic layers associate child abuse with immune and small GTPase dysregulation [Lateral Amygdala (human brain tissue)]  
SRP266653  TNF induced inflammatory transcription dynamics and epigenetic changes [12d-TNFa treated HEK 293 cells, 12d-TNFa treated HEK 293 cells with RELA KO, 12d-TNFa treated HEK 293 cells with TET2 KO, non-treated HEK 293, non-treated HEK 293 with RELA KO, non-treated HEK 293 with TET2 KO]  
SRP266759  DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance [BS] [MCF7, SK-MEL-28]  
SRP267867  Human ribosomal DNA (rDNA) epigenetic clock [whole blood]  
SRP267967  Characterization of universal features of partially methylated domains across tissues and species [Breast tumor, Lung]  
SRP268755  Probing the signaling requirements for naïve human pluripotency by high-throughput chemical screening [WGBS] [Naive hESC, Primed hESC, hESC]  
SRP268783  Acute depletion of CTCF rewires genome-wide chromatin accessibility [Human B Lineage Acute Lymphoblastic Leukemia SEM cell carrying bi-allelic miniAID-mClover3 knockin tags]  
SRP268979  Loss of epigenetic suppression of retrotransposons with oncogenic potential in aging mammary luminal epithelial cells [Mammary luminal epithelial cells]  
SRP269389  Targeted intragenic demethylation initiates chromatin rewiring for gene activation [HCC cell line]  
SRP271639  Cell-free DNA Methylation and Transcriptomic Signature Prediction of Pregnancies with Adverse Outcomes [WGBS] [plasma]  
SRP272481  GATA transcription factors, SOX17 and TFAP2C, drive the human germ-cell specification program [Bisulfite-Seq] [iPSC]  
SRP272595  WGBS analysis of various colon cancer cell lines [Colorectal Adenocarcinoma]  
SRP273813  Whole genome methylation sequencing of circulating tumor cells (CTCs) in Lung cancer. [Adjacent normal tissue, Lung, blood]  
SRP278376  Epigenetic Landscape of Pediatric Ependymoma Recurrence [brain]  
SRP278588  DNA methyation of intragenic CpG islands are required for differentiation from iPSC to NPC [Human induced pluripotent stem cell, Human induced pluripotent stem cell derived]  
SRP282493  DNA methylation maintains integrity of higher order genome architecture (WGBS) [colorectal cancer cell line]  
SRP286180  Comprehensive methylome sequencing reveals prognostic epigenetic biomarkers for prostate cancer mortality [Adjacent normal, Tumour]  
SRP286271  Homo sapiens Raw sequence reads [Cervical cancer adjacent tissue, Cervical cancer tissue, Cervical cells]  
SRP286409  H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination [Bisulfite-seq] [E14, Hela]  
SRP286872  Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS] [Human secondary fibroblasts, Keratinocytes, Mesenchymal stem cells, human embryonic stem cells, iPSC]  
SRP291325  Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS 2] [Cultured human fibroblasts, Human pluripotent stem cells, Human reprogramming intermediate cells, human embryonic stem cells, iPSC]  
SRP293255  DNA Methylation Potential Energy Landscape Analysis of Pediatric Pre-B cell Acute Lymphoblastic Leukemia (ALL) and Normal B cells and precursors [cell line, primary]  
SRP298020  DNA methylation analysis for target regions in human smooth muscle cells. [Cultured smooth muscle cells]  
SRP298022  DNA hydroxymethylation analysis for target regions in human smooth muscle cells. [Cultured smooth muscle cells]  
SRP298508  Alternative splicing and the epigenome in CML remission [WGBS] [PBMCs]  
SRP299418  cell-free DNA sequencing of plasma [plasma]  
SRP299802  Acute lymphoblastic leukemia displays a distinct highly methylated genome [cell line]  
SRP302514  Integrative multiplatform molecular profiling of human colorectal cancer reveals proteogenomic alterations underlying mitochondrial inactivation [The normal adjacent colorectal mucosa was obtained at a distance of 5 cm from the tumor., The normal adjacent colorectal mucosa was obtained at a distance of 6 cm from the tumor., The normal adjacent colorectal mucosa was obtained at a distance of 7 cm from the tumor., tumor tissue]  
SRP304105  Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability [cell line]  
SRP304130  Impact of exposures to persistent endocrine disrupting compounds on the sperm methylome in regions associated with neurodevelopmental disorders [sperm]  
SRP304684  Inherent genomic properties underlie the epigenomic heterogeneity of human induced pluripotent stem cells [WGBS] [SRS8188292, SRS8188293, SRS8188294, SRS8188295, SRS8188296, SRS8188297]  
SRP304712  Epigenome profiling in gastric carcinogenesis by whole genome bisulfite sequencing [stomach]  
SRP308490  Pan-cancer predictions of transcription factors mediating aberrant DNA methylation [HCC1954 cells, hTERT-HME1 cells]  
SRP308810  Genome-wide Programmable Transcriptional Memory by CRISPR-based Epigenome Editing [HEK293T]  
SRP308854  Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters [WGBS] [umbilical cord-derived mesenchymal stem cells (PCS-500-010, lot #63216949), umbilical cord-derived mesenchymal stem cells (PCS-500-010, lot #63216950)]  
SRP309314  Epigenomics of nasal mucosa in children with acute respiratory illness [Nasal Mucosa]  
SRP309354  Stable DNMT3L Overexpression in SH-SY5Y Neurons Recreates a Facet of the Genome-Wide Down Syndrome DNA Methylation Signature [SH-SY5Y]  
SRP309472  Epigenetic crosstalk [KYSE-30]  
SRP310254  DNMT3A haploinsufficiency causes dichotomous DNA methylation defects at enhancers in mature human immune cells [BiSulfite-seq] [hESC-derived macrophages]  
SRP314963  The proline and serine rich protein PROSER1 mediates O-GlcNAcylation of TET2 to regulate DNA demethylation on UTX-dependent enhancers and CpG islands [WGBS] [human embryonic kidney cells]  
SRP315039  DNA methylome and genome sequencing of human ovarian epithelial cell line [ovarian epithelium]  
SRP315878  Homo sapiens Epigenomics [Bone marrow, Peripheral blood]  
SRP316059  NSCLP-Twins [Saliva DNA]  
SRP316873  Whole-Genome Bisulfite Sequencing of Nasopharyngeal Carcinoma and Nasopharyngeal Epithelial Tissues [SeqCapEpi] [Methylation Control, cell line]  
SRP318399  DNA methylation profiles of four immune cell types from MS patients and healthy controls [peripheral blood]  
SRP319892  Expanding highly homogenous population of human primordial germ cell like cells in long-term and feeder-free culture condition [WGBS] [freshly isolated human PGCLC, human EGC, human iPSC, long-term culture human PGCLC c56, long-term culture human PGCLC c63, long-term culture human PGCLC c71, long-term culture human PGCLC c84]  
SRP320538  Dynamic patterns of DNA methylation in the normal prostate epithelial differentiation program are targets of aberrant methylation in prostate cancer [BiSulfite-seq] [cell line]  
SRP321573  Conservation and divergence of DNA methylation patterns and functions in vertebrates [Primary dermal fibroblasts, Psoas muscle]  
SRP321876  Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states [blood, kidney]  
SRP323032  Mapping the glucocorticoid gene regulatory network and alterations that contribute to steroid resistance in childhood acute lymphoblastic leukemia [WGBS] [ALL]  
SRP323101  RRBS-based quantitative methylation analysis define 100% methylation fidelity CpG sites [peripheral blood, retina]  
SRP323990  Identification of DNA Methylation Predicts Onset of PTSD and Depression Following Trauma [Peripheral blood mononuclear cells]  
SRP324016  Cerebrospinal fluid cell-free DNA methylomes subtyping pediatric medulloblastoma [cerebrospnial fluid from pediatric medullablastoma patient]  
SRP324100  Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism [WGBS] [Placenta]  
SRP325062  Cerebrospinal fluid cell-free DNA methylomes recapture pediatric medulloblastoma tissue's tumor feature [CSF, Tumor_tissue]  
SRP325428  Systematic profiling of DNMT3A variants reveals protein instability mediated by the DCAF8 E3 ubiquitin ligase adaptor [cell line, mouse embryonic stem cells]  
SRP325722  Chemical-based external stimulation reprograms human somatic cells into pluripotency (WGBS) [adult human adipose derived mesenchymal stromal cells, hES cells H1, hES cells H9, human chemically induced pluripotent stem cells, human embryonic fibroblasts, human somatic cells during chemical reprogramming stage I, human somatic cells during chemical reprogramming stage II, human somatic cells during chemical reprogramming stage II without 5azac, human somatic cells during chemical reprogramming stage II without JNKIN8]  
SRP325924  Distinct DNA methylation landscape between pediatric brain and adult brain [cerebellum, cerebrum]  
SRP328700  Whole genome methylation profiliing between the IMU and KRT subtypes of HPV-associated head and neck cell carcinoma (HNSCC) [head and neck cell carcinoma]  
SRP329794  Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation [cell line]  
SRP330251  Vitamin B12 regulates the transcriptomes of human ileal epithelial cells (iECs) [Ileum]  
SRP332046  The WGBS and ATAC-seq from human serum and amniotic cell [blood]  
SRP332277  Methyl-seq Human [sperm]  
SRP332448  H3K9 dimethylation safeguards cancer cells against activation of the Interferon pathway [WGBS] [U937 cells]  
SRP334550  Proinflammatory cytokines promote TET2-mediated DNA demethylation during CD8 T cell effector differentiation [CD8+ T Cells]  
SRP336573  Perturbation of TET2 condensation induces genome-wide promiscuous DNA hypomethylation and curtails leukemia cell growth [Human Leukemia cell line, mouse embryonic stem cells (mESCs)]  
SRP337018  whole-genome wide DNA methylation aberration in HCC [liver]  
SRP337159  Homo sapiens Epigenomics [sperm]  
SRP337501  DNA methylation landscape and signature of CD4+ lymphocytes of lamina propria in Crohn's patients by reduced representation and bisulfite sequencing [BiSulfite-seq] [Isolated CD4+ cells]  
SRP338189  Deleting DNMT3A in CAR T cells prevents exhaustion and 1 enhances antitumor activity [T cells]  
SRP338680  Molecular profile of HepG2 cell line (IBMC) [liver]  
SRP338853  DNA methylation of MOLM-13 cells [cell line]  
SRP339574  Methylation Mediated Silencing of Protein Kinase C Zeta Induces Apoptosis Avoidance through ATM/Chk-2 Inactivation in Dedifferentiated Chondrosarcoma [human chondrosarcoma cell line]  
SRP341621  LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA [Plasma separated from blood]  
SRP342964  scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation [blood]  
SRP345048  Antigen cross-presentation in young tumor-bearing hosts promotes CD8 T cell terminal differentiation [WGBS] [Germ Cell Tumor]  
SRP346828  NOMe-HiC: joint profiling of genetic variants, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule [lung fibroblast cell line]  
SRP346999  Whole genome bilsufite sequencing of sgTET2 HepG2 [missing]  
SRP348645  Transcriptomic and Epigenomic Profiles of CIC-knockout and IDH1 mutant cells [WGBS] [Immortalized Astrocyte Cells]  
SRP352189  CRISPR-based targeted haplotype-resolved assembly of a megabase region [WGBS] [B cell]  
SRP353040  WGBS of control and DAC-treated tumor tissue from PDX model [colorectal cancer]  
SRP353340  NOMe-Seq analysis of IMR-90 cell line [IMR-90 nuclei treated with CCMT, IMR-90 nuclei without MTase treatment]  
SRP353536  Transcriptome and Bisulfite sequencing of drug treated breast cancer cell lines [mammary gland]  
SRP353670  DNA Methylation Potential Energy Landscape Analysis of MLL-rearranged Acute Myeloid Leukemia (AML) and Normal hematopoietic precursors [WGBS] [primary]  
SRP353982  methyl-Seq of Pediatric ARDS Nasal and Bronchial Brushings [Bronchial, Nasal]  
SRP356708  Young vs Old Fibroblast WGBS [skin]  
SRP357194  HPV integration generates cellular super enhancer and functions as ecDNA to regulate genome-wide transcription [C33A, CaSki, HeLa, S12, SiHa]  
SRP357363  Whole-genome bisulfite sequencing anaysis of PSCs [Feeder-free PSC]  
SRP357372  WGBS and RNA-seq of HUVECs transfected with siNC or siTET2 [Human Umbilical Vein Endothelial Cells]  
SRP358957  WGBS of OLD and YOUNG primary Fibroblasts [ARM SKIN, Inguinal area, NS, Umbilical area]  
SRP362494  The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory (WGBS) [iPSCs]  
SRP364929  human rDNA obesity [Blood]  
SRP367891  DNA methylation analysis of malignant and normal uveal melanocytes reveals novel molecular features of uveal melanoma [Primary Culture, UM sorted cells]  
SRP368308  Lack of major genome-wide DNA methylation changes in succinate-treated human epithelial cells [Human Bronchial cells]  
SRP373598  GM12878 MultiOmics [blood]  
SRP373708  WGBS of primary and recurrent ovarian cancer tumors with and without BRCA1/2 mutations [ovarian cancer tumors]  
SRP373924  NOMe-Seq analysis of IMR-90 cell line II [IMR-90 nuclei treated with GCMT]  
SRP375137  DNMT3A-mediated DNA demethylation is required for hypoxia induced EMT of human cancer cells [SRS12996594, SRS12996595, SRS12996596, SRS12996597, SRS12996598, SRS12996599, SRS12996600, SRS12996601, SRS12996602, SRS12996603, SRS12996604, SRS12996605, SRS12996606, SRS12996607, SRS12996608, SRS12996609]  
SRP376918  Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes [N.A.]  
SRP377560  Reversible epigenetic alterations mediate PSMA expression heterogeneity in advanced metastatic prostate cancer. [Prostate cancer patient derived xenograft]  
SRP384348  Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation [WGBS-Seq] [Ngn2_neurons, ebryonic stem cells, embryonic kidney cells]  
SRP386415  SELF-PATTERNING OF HUMAN STEM CELLS INTO POST-IMPLANTATION LINEAGES [Cell line]  
SRP387154  Accurate simultaneous sequencing of genetic and epigenetic bases in DNA [Blood]  
SRP387319  Dysfunction of 5-methylcytosine oxidases and the Polycomb protein RYBP leads to widespread DNA hypermethylation and cell transformation [WGBS] [Human Bronchial cells]  
SRP387971  Tonic-signaling chimeric antigen receptors drive human regulatory T cell exhaustion [CD4+ TCONV cells, CD4+ TREG cells]  
SRP389118  Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation [WGBS] [Esophageal adenocarcinoma, Esophageal squamous cell carcinoma]  
SRP392105  Placental ischemia disrupts DNA methylation patterns of distal regulatory regions in rat [Placenta, Planceta]  
SRP394454  Methylation profile of latent metastatic (Lat-M) cells from clear cell renal cell carcinoma (ccRCC) [kidney cancer cells]  
SRP395427  WGBS-seq and oxWGBS-seq Atlas for Oral Squamous Cell Carcinoma [OSCC tissue, normal adjacent tissue]  
SRP396192  DNA Methylation Profile of Lip Tissue from Congenital Non-syndromic Cleft Lip and Palate Patients by Whole Genome Bisulfite Sequencing [lip tissue]  
SRP396408  Neonatal necrotizing enterocolitis-associated DNA methylation signatures in the colon are evident in stool samples of affected individuals [colon tissue, stool]  
SRP396513  Rockfish: Detection of 5mC DNA Modifications Using Raw Nanopore Signal [Embryonic stem cell, purified cardiomyocyte]  
SRP396738  Highly efficient and rapid generation of human pluripotent stem cells by chemical reprogramming (WGBS) [adult human adipose derived mesenchymal stromal cells, human chemically induced pluripotent stem cells]  
SRP397676  Loss of tight junctions disrupts gastrulation patterning and increases differentiation towards the germ cell lineage in human pluripotent stem cells [Skin fibroblasts]  
SRP397737  Global hypermethylation of intestinal epithelial cells is a hallmark feature of neonatal surgical necrotizing enterocolitis [lcm_colon_ileum] [colon, ileum]  
SRP398111  to be updated [blood]  
SRP400466  Multiplex Epigenome Editing of MECP2 to Rescue Rett Syndrome Neurons (WGBS) [human embryonic stem cells]  
SRP404930  LN-stem, tumor stem, tumor terminally differentiated CD8 T cells from human kidney cancer [LN, PBMC, Spleen, TDLN, Tumor]  
SRP405874  Rebalancing TGFß1/BMP Signals Preserves Effector and Memory Programs in Terminally Dysfunctional CD8+ T Cells [Bisulfite-Seq] [Cord blood]  
SRP405928  Optimized bisulfite sequencing reveals the lack of 5-methylcytosine in mammalian mitochondrial DNA [WGBS] [Platelet, embryonic stem cell, human breast cancer cell, human embryonic kidney cell, human hepatocarcinoma cell, lung adenocarcinoma cell, melanoma cell, mouse brain, neuroblastoma cell]  
SRP408041  The catalytic activity of TET1 is required for human germ cell fate choice [Bisulfite-Seq] [hESC, hPGCLC]  
SRP409096  Epigenetic dynamics during capacitation of naïve human pluripotent stem cells [PBAT] [chemically reset hPSC, conventional hPSC, embryo-derived naive hPSC]  
SRP415835  Comprehensive sequence-based DNA methylation analysis suggests that PanIN lesions are acinar-derived and epigenetically primed for carcinogenesis [Pancreas]  
SRP420728  5-hydroxymethylcytosines regulate gene expression as a passive DNA demethylation resisting epigenetic mark in proliferative somatic cells [methylation] [HEK293T]  
SRP423445  Ultrafast Bisulfite Sequencing for Efficient and Accurate 5-Methylcytosine Detection in DNA and RNA [mESC, plasma, stem cell]  
SRP424257  Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [1] [glioblastoma tumor]  
SRP426514  Epigenetic therapy activates TE-chimeric transcripts to provide additional source of antigens in glioblastoma stem cells [brain, skin]  
SRP426633  DNA methylation alterations in prostate cancer patient derived xenograft models revealed by whole genome bisulfite sequencing [Patient derived xenograft]  
SRP430982  Whole genome bisulfite sequencing data of blood cfDNA form 29 CRC and 9 Non-CRC patients. [blood]  
SRP432935  Epigenetic modification sequencing data of human U2OS cells [tibia]  
SRP434804  MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons [WGBS] [neuron]  
SRP436137  Malignant Transformation Drives DNA Methylation Loss and Transcriptional Activation of Transposable Element Loci [WGBS] [Neonatal Foreskin]  
SRP439675  NPC268 whole-genome bisulfite sequencing (WGBS) [Human nasopharyngeal carcinoma]  
SRP440514  TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [WGBS] [Human embryonic kidney]  
SRP441171  Single-stranded Premethylated 5mC Adapters Uncovers the Methylation Profile of Plasma Ultrashort Single-Stranded Cell-Free DNA [Plasma]  
SRP441209  Omics analyses of stromal cells from ACM patients reveal alterations in chromatin organization and mitochondrial homeostasis [Bisulfite-Seq] [cardiac mesenchymal stromal cells]  
SRP446321  Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells [Colon]  
SRP450395  Epigenetic therapy targets the 3D epigenome in endocrine-resistant breast cancer [WGBS] [Breast cancer PDX model Gar15-13, Breast cancer PDX model HCI005]  
SRP450683  Epigenomic landscape of colorectal adenoma and cancer [colorectal]  
SRP451599  The effect of Histone H3.3 knockdown on DNA methylation in HepG2 cells [hepatoma cell]  
SRP452335  Epigenetic sequencing of allogeneic HSC-derived CAR-engineered NKT cells [BCAR-T, BCAR-iNKT, BCAR-iNKT-IL15]  
SRP454277  Characterisation and reproducibility of the HumanMethylationEPIC v2.0 BeadChip for DNA methylation profiling [WGBS] [Prostate tumour]  
SRP456514  A modular dCas9-based recruitment platform for combinatorial epigenome editing [human embyonic kidney]  
SRP461642  Whole genome bisulfite sequencing identifies stage- and subtype-specific DNA methylation signatures in pancreatic cancer [PanIN mouse organoid, normal pancreatic ductal mouse organoid, normal pancreatic ductal patient-derived organoid, pancreatic ductal adenocarcinoma mouse organoid, pancreatic ductal adenocarcinoma patient-derived organoid]  
SRP461724  Endogenous retrovirus LTR12C hold potential locus-dependent activities as promoter and/or enhancer [BiSulfite-seq] [Human Embryonic Kidney]  
SRP462543  iPSC-based modeling of preeclampsia identifies defects in extravillous trophoblast differentiation [Mesenchymal stem cell, iPSC derived extravillous trophoblast, iPSC derived trophoblast stem cell, iPSC reprogrammed from renal epithelial cells, iSPC reprogrammed from mesenchymal stem cell, placenta]  
SRP464289  DNMT3B PWWP mutations cause hypermethylation of heterochromatin (WGBS) [colorectal cancer cell line]  
SRP464400  Epigenetic signature of human vitamin D3 and IL-10-conditioned regulatory DCs [Leukapheresis products]  
SRP467414  DNA methylation profiling identifies TBKBP1 as potent amplifier of cytotoxic activity in CMV-specific human CD8+ T cells [peripheral blood]  
SRP470181  Hypermethylation of DNA impairs megakaryogenesis in delayed platelet recovery after allogeneic hematopoietic stem cell transplantation [Bone marrow]  
SRP473783  scNanoSeq-CUT&Tag: a long-read single-cell CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells [blood]  
SRP474233  Identification of differentially expressed tumour-related genes regulated by UHRF1 regulated DNA methylation [WGBS] [Mammary gland]  
SRP478956  Divergent originations of parental DNA hydroxymethylation in human preimplantation embryos [human embryonic stem cells]  
SRP485412  PRC2-AgeIndex: a universal biomarker of aging and rejuvenation [WGBS] [dermal fibroblasts, foreskin fibroblasts]  
SRP490076  Persistent epigenome anomalies in induced pluripotent stem cells from late-onset sporadic Alzheimer's disease cases [BiSulfite-seq] [iPSC]  
SRP490212  UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation [BiSulfite-seq] [Colorectal Carcinoma epithelial cells]  
SRP491820  Cell-free DNA Methylation Patterns in Aging and Their Association with Inflamm-aging [Plasma]  
SRP494242  Methylation changes induced by alpha-hemolysin from Staphylococcus aureus in human primary Th17 lymphocytes. [lymphocyte]  
SRP494617  methylGrapher: Genome-Graph-Based Processing of DNA Methylation Data from Whole Genome Bisulfite Sequencing [1000 Genomes LCL]  
SRP496763  Charting the regulatory landscape of TP53 on transposable elements in cancer [WGBS] [A549, HCT116, RKO]  
SRP499337  Repetitive element transcript accumulation is related to inflammaging in humans [PBMC]  
SRP500704  Bisulfite-Free Whole-Genome Mapping of 5-Methylcytosine at Single-Base Resolution by NTD-seq [cell line]  
SRP503688  Genome-wide DNA methylation seq data and RNA seq data in three paired HCC and normal tissue samples [HCC tissue, Paracancerous tissue]  
SRP504106  Mutant IDH1 inhibition induces reverse transcriptase and dsDNA sensing to activate tumor immunity [human WGBS] [cholangiocarcinoma]  
SRP504674  Generation of human spermatogonia from pluripotent stem cells [PGCLCs, xrTestis]  
SRP504847  Ectopic expression of DNMT3L in human trophoblast stem cells restores features of the placental methylome [PBAT BS-Seq] [Trophoblast stem cells]  
SRP508090  Epigenomic landscape of human cumulus cells in premature ovarian insufficiency using single-base resolution methylome and hydroxymethylome. [scWGBS_seq] [ovary]  
SRP510440  Tracking and mitigating imprint erasure during induction of naïve human pluripotency at single-cell resolution [Bisulfite-Seq] [hESC]  
SRP510686  A comparison of methylome data produced with tPBAT and sPBAT library preparation protocols. [sPBAT library prepared from IMR90 genomic DNA, tPBAT library prepared from IMR90 genomic DNA]  
SRP510797  Homo sapiens Raw sequence reads [kidney]  
SRP510877  High-Resolution Molecular Profiling of Epileptic Brain Activity via Explanted Depth Electrodes [Methylation] [Brain]  
SRP511377  Bisulfite seq of UHRF1 KO A549 cells [tumor cell]  
SRP511776  Patient TSC2 Mutant Cells Exhibit Aberrations in Early Neurodevelopment Accompanied by Changes in the DNA Methylome (Bisulfite-Seq) [iPSC-derived neural progenitor cells, induced pluripotent stem cells (iPSC)]  
SRP514328  DNA 5-methylcytosine regulates genome-wide formation of G-quadruplex structures [WGBS] [Human embryonic kidney]  
SRP515320  Epigenetic dysregulation of transposable elements in cognitive impairment and Alzheimer's disease [Isolated WBC]  
SRP515825  Mitochondria-localized MBD2c facilitates mtDNA transcription and drug resistance [Bisulfite-Seq] [MDA-MB-468]  
SRP519334  sciMETv3 Single-cell DNA Methylation Raw Sequence Reads [BA46]  
SRP521100  Continuous turnover and asynchronous aging of human memory T cells across tissues [jejunum, lung, mesenteric lymph node, spleen]  
SRP521389  Bisulfite-Free Whole-Genome Mapping of 5-Methylcytosine at Single-Base Resolution by TAD-seq [cell line]  
SRP523710  Rapid Human Oogonia-like Cell Specification via Combinatorial Transcription Factor-Directed Differentiation [BiSulfite-seq] [DDX4+ induced oogonia-like cells, DDX4+ induced oogonia-like cells (no DNMT1i), DDX4+ induced oogonia-like cells, naive reset, hPGCLC, hiPSC_naivereset, hiPSC_primed]  
SRP523753  Vitamin C promotes epidermal proliferation by enhancing the DNA demethylation of proliferation-related genes in human epidermal equivalents (WGBS) [SRS22229878, SRS22229879, SRS22229880, SRS22229881, SRS22229882, SRS22229883, SRS22229884, SRS22229885, SRS22229886, SRS22229887, SRS22229888, SRS22229889]  
SRP526064  Valine-restricted diet regulates DNA methylation [Bisulfite-Seq] [HCT116]  
SRP531388  Inferring DNA methylation in non-skeletal tissues of ancient specimens [bone (femur)]  
SRP533334  Methylation patterns of the nasal epigenome of hospitalized SARS-CoV-2 positive patients reveal insights into molecular mechanisms of COVID-19 [Nasopharyngeal swab]  
SRP543819  Seminal Plasma cell-free DNA [Seminal Plasma]  
SRP551395  Clonorchis sinensis infection alters the methylation and hydroxymethylation of hepatocellular carcinoma [HCC adjacent tissue, HCC tumor tissue]  
SRP551562  DNA Methylation Profiling at Base-Pair Resolution Reveals Unique Epigenetic Features of Early-Onset Colorectal Cancer in Underrepresented Populations [Moderately differentiated rectal adenocarcinoma, Moderately differentiated rectosigmoid adenocarcinoma, Moderately differentiated sigmoid colon cancer, Normal adjacent colonic mucosal, Normal adjacent rectal, Normal adjacent rectosigmoid, Normal adjacent sigmoid, Rectal adenocarcinoma arising from tubulovillous adenoma with high grade dysplasia]  
SRP559414  The myoblast methylome: Multiple types of associations with chromatin and transcription [skeletal muscle]  
Assembly: Human Dec. 2013 (GRCh38/hg38)