Human Gene TSPAN10 (ENST00000571707.1_1) from GENCODE V47lift37

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Description: tetraspanin 10 (from HGNC TSPAN10)
Gencode Transcript: ENST00000571707.1_1
Gencode Gene: ENSG00000182612.11_12
Transcript (Including UTRs)
Position: hg19 chr17:79,609,349-79,613,607 Size: 4,259 Total Exon Count: 2 Strand: +

Page Index	Sequence and Links	Primers	CTD	RNA-Seq Expression	Other Species
mRNA Descriptions	Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr17:79,609,349-79,613,607)			mRNA (may differ from genome)		No protein
Gene Sorter	Genome Browser	Other Species FASTA	VisiGene	Gene interactions	Table Schema
BioGPS	Ensembl	ExonPrimer	HGNC	PubMed	Wikipedia

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene C009505 4,4'-diaminodiphenylmethane C103505 AM 251 D002945 Cisplatin D006830 Hydralazine D013749 Tetrachlorodibenzodioxin D014635 Valproic Acid D015025 Zearalenone C016340 o,p'-DDT C015559 trimellitic anhydride

RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 0.68 RPKM in Testis Total median expression: 10.36 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	AB593081 - Homo sapiens TSPAN10 mRNA for tetraspanin-10, complete cds, clone: HP05543-ARe53H11. AB593082 - Homo sapiens TSPAN10 mRNA for tetraspanin-10, complete cds, clone: HP05543-ARe88G02. AK096926 - Homo sapiens cDNA FLJ39607 fis, clone SKNSH2006304. JD456905 - Sequence 437929 from Patent EP1572962. BC032802 - Homo sapiens tetraspanin 10, mRNA (cDNA clone MGC:44915 IMAGE:5191718), complete cds. JD383109 - Sequence 364133 from Patent EP1572962. BC021923 - Homo sapiens tetraspanin 10, mRNA (cDNA clone MGC:31784 IMAGE:4876887), complete cds. AF325213 - Homo sapiens oculospanin (OCSP) mRNA, complete cds. JD407244 - Sequence 388268 from Patent EP1572962. KJ899732 - Synthetic construct Homo sapiens clone ccsbBroadEn_09126 TSPAN10 gene, encodes complete protein. DL491538 - Novel nucleic acids. DL490143 - Novel nucleic acids. JD196015 - Sequence 177039 from Patent EP1572962.

Other Names for This Gene


	Alternate Gene Symbols: AK096926, uc326bhv.1 UCSC ID: ENST00000571707.1_1 RefSeq Accession: NM_001290212.2

Gene Model Information


	Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.