Human Gene TRPC5 (ENST00000262839.3_7) from GENCODE V47lift37
  Description: transient receptor potential cation channel subfamily C member 5 (from RefSeq NM_012471.3)
Gencode Transcript: ENST00000262839.3_7
Gencode Gene: ENSG00000072315.4_8
Transcript (Including UTRs)
   Position: hg19 chrX:111,011,239-111,326,004 Size: 314,766 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chrX:111,019,541-111,195,648 Size: 176,108 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:111,011,239-111,326,004)mRNA (may differ from genome)Protein (973 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TRPC5_HUMAN
DESCRIPTION: RecName: Full=Short transient receptor potential channel 5; Short=TrpC5; AltName: Full=Transient receptor protein 5; Short=TRP-5; Short=hTRP-5; Short=hTRP5;
FUNCTION: Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective (By similarity). May also be activated by intracellular calcium store depletion.
ENZYME REGULATION: Calcium channel activity is enhanced by MYLK, that promotes its subcellular localization at the plasma membrane.
SUBUNIT: Interacts with TRPC4AP (By similarity). Homotetramer and heterotetramer with TRPC1 and/or TRPC4. Interacts with NHERF (By similarity). Interacts with MX1 and RNF24. Interacts (via C- terminus) with CABP1. Interacts with SESTD1 (via the spectrin 1 repeat).
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in brain with higher levels in fetal brain. Found in cerebellum and occipital pole.
SIMILARITY: Belongs to the transient receptor (TC 1.A.4) family. STrpC subfamily. TRPC5 sub-subfamily.
SIMILARITY: Contains 4 ANK repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TRPC5
Diseases sorted by gene-association score: hypertrophic pyloric stenosis (10), pyloric stenosis (9), hypertension, essential (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.24 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 1.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -333.30919-0.363 Picture PostScript Text
3' UTR -1963.578302-0.237 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR005821 - Ion_trans_dom
IPR004729 - TRP_channel
IPR013555 - TRP_dom
IPR005461 - TRPC5_channel
IPR002153 - TRPC_channel

Pfam Domains:
PF00520 - Ion transport protein
PF08344 - Transient receptor ion channel II
PF12796 - Ankyrin repeats (3 copies)

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
48403 - Ankyrin repeat

ModBase Predicted Comparative 3D Structure on Q9UL62
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0005216 ion channel activity
GO:0005262 calcium channel activity
GO:0005515 protein binding
GO:0015279 store-operated calcium channel activity
GO:0030276 clathrin binding
GO:0042805 actinin binding
GO:0051117 ATPase binding
GO:0070679 inositol 1,4,5 trisphosphate binding

Biological Process:
GO:0006811 ion transport
GO:0006816 calcium ion transport
GO:0006828 manganese ion transport
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0007399 nervous system development
GO:0008284 positive regulation of cell proliferation
GO:0010800 positive regulation of peptidyl-threonine phosphorylation
GO:0030182 neuron differentiation
GO:0045666 positive regulation of neuron differentiation
GO:0045773 positive regulation of axon extension
GO:0050774 negative regulation of dendrite morphogenesis
GO:0051480 regulation of cytosolic calcium ion concentration
GO:0055085 transmembrane transport
GO:0070588 calcium ion transmembrane transport
GO:1902630 regulation of membrane hyperpolarization

Cellular Component:
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030425 dendrite
GO:0030426 growth cone
GO:0034704 calcium channel complex
GO:0043025 neuronal cell body
GO:0045121 membrane raft


-  Descriptions from all associated GenBank mRNAs
  AF054568 - Homo sapiens transient receptor potential calcium channel 5 (TRPC5) mRNA, complete cds.
BC137271 - Homo sapiens transient receptor potential cation channel, subfamily C, member 5, mRNA (cDNA clone MGC:168891 IMAGE:9021268), complete cds.
BC137274 - Homo sapiens transient receptor potential cation channel, subfamily C, member 5, mRNA (cDNA clone MGC:168894 IMAGE:9021271), complete cds.
KJ897706 - Synthetic construct Homo sapiens clone ccsbBroadEn_07100 TRPC5 gene, encodes complete protein.
AB209258 - Homo sapiens mRNA for transient receptor potential cation channel, subfamily C, member 5 variant protein.
JD364480 - Sequence 345504 from Patent EP1572962.
JD112465 - Sequence 93489 from Patent EP1572962.
JD112081 - Sequence 93105 from Patent EP1572962.
JD323124 - Sequence 304148 from Patent EP1572962.
JD286345 - Sequence 267369 from Patent EP1572962.
JD416130 - Sequence 397154 from Patent EP1572962.
JD311382 - Sequence 292406 from Patent EP1572962.
JD182441 - Sequence 163465 from Patent EP1572962.
JD081012 - Sequence 62036 from Patent EP1572962.
JD228942 - Sequence 209966 from Patent EP1572962.
JD530082 - Sequence 511106 from Patent EP1572962.
JD328647 - Sequence 309671 from Patent EP1572962.
JD064738 - Sequence 45762 from Patent EP1572962.
JD554670 - Sequence 535694 from Patent EP1572962.
JD357951 - Sequence 338975 from Patent EP1572962.
JD094254 - Sequence 75278 from Patent EP1572962.
JD245931 - Sequence 226955 from Patent EP1572962.
JD491732 - Sequence 472756 from Patent EP1572962.
JD270600 - Sequence 251624 from Patent EP1572962.
JD364810 - Sequence 345834 from Patent EP1572962.
JD234280 - Sequence 215304 from Patent EP1572962.
JD538890 - Sequence 519914 from Patent EP1572962.
JD509299 - Sequence 490323 from Patent EP1572962.
JD564901 - Sequence 545925 from Patent EP1572962.
JD124500 - Sequence 105524 from Patent EP1572962.
JD086636 - Sequence 67660 from Patent EP1572962.
JD539738 - Sequence 520762 from Patent EP1572962.
JD445716 - Sequence 426740 from Patent EP1572962.
JD044051 - Sequence 25075 from Patent EP1572962.
JD234772 - Sequence 215796 from Patent EP1572962.
JD479886 - Sequence 460910 from Patent EP1572962.
JD519455 - Sequence 500479 from Patent EP1572962.
JD418791 - Sequence 399815 from Patent EP1572962.
JD390720 - Sequence 371744 from Patent EP1572962.
JD418440 - Sequence 399464 from Patent EP1572962.
JD418745 - Sequence 399769 from Patent EP1572962.
JD383677 - Sequence 364701 from Patent EP1572962.
JD300002 - Sequence 281026 from Patent EP1572962.
JD359387 - Sequence 340411 from Patent EP1572962.
JD540173 - Sequence 521197 from Patent EP1572962.
JD177799 - Sequence 158823 from Patent EP1572962.
JD177798 - Sequence 158822 from Patent EP1572962.
JD520294 - Sequence 501318 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_raccPathway - Ion Channels and Their Functional Role in Vascular Endothelium

Reactome (by CSHL, EBI, and GO)

Protein Q9UL62 (Reactome details) participates in the following event(s):

R-HSA-3295579 TRPs transport extracellular Ca2+ to cytosol
R-HSA-3295583 TRP channels
R-HSA-418890 Role of second messengers in netrin-1 signaling
R-HSA-2672351 Stimuli-sensing channels
R-HSA-373752 Netrin-1 signaling
R-HSA-983712 Ion channel transport
R-HSA-422475 Axon guidance
R-HSA-382551 Transport of small molecules
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: B2RP53, ENST00000262839.1, ENST00000262839.2, NM_012471, O75233, Q5JXY8, Q9UL62, Q9Y514, TRP5, TRPC5_HUMAN, uc317hdw.1, uc317hdw.2
UCSC ID: ENST00000262839.3_7
RefSeq Accession: NM_012471.3
Protein: Q9UL62 (aka TRPC5_HUMAN or TRP5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.