Human Gene TRMT112 (ENST00000544844.6_12) from GENCODE V47lift37
  Description: tRNA methyltransferase activator subunit 11-2, transcript variant 1 (from RefSeq NM_016404.3)
Gencode Transcript: ENST00000544844.6_12
Gencode Gene: ENSG00000173113.8_13
Transcript (Including UTRs)
   Position: hg19 chr11:64,083,932-64,085,031 Size: 1,100 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr11:64,084,333-64,084,998 Size: 666 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:64,083,932-64,085,031)mRNA (may differ from genome)Protein (125 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TR112_HUMAN
DESCRIPTION: RecName: Full=tRNA methyltransferase 112 homolog; AltName: Full=TRM112-like protein;
FUNCTION: Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5- methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.
SUBUNIT: Interacts with ALKBH8 and HEMK2/N6AMT1.
SIMILARITY: Belongs to the TRM112 family.
SIMILARITY: Contains 1 TRM112 domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 75.33 RPKM in Adrenal Gland
Total median expression: 1983.67 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.6033-0.230 Picture PostScript Text
3' UTR -118.40401-0.295 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005651 - UPF0434/Trm112

Pfam Domains:
PF03966 - Trm112p-like protein

SCOP Domains:
158997 - Trm112p-like

ModBase Predicted Comparative 3D Structure on Q9UI30
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008276 protein methyltransferase activity
GO:0046982 protein heterodimerization activity
GO:0016435 rRNA (guanine) methyltransferase activity

Biological Process:
GO:0006364 rRNA processing
GO:0018364 peptidyl-glutamine methylation
GO:0030488 tRNA methylation
GO:0070476 rRNA (guanine-N7)-methylation
GO:2000234 positive regulation of rRNA processing

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0032991 macromolecular complex
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF211205 - JP 2014500723-A/18708: Polycomb-Associated Non-Coding RNAs.
BC105294 - Homo sapiens hypothetical protein HSPC152, mRNA (cDNA clone MGC:111150 IMAGE:6725102), complete cds.
BC017172 - Homo sapiens hypothetical protein HSPC152, mRNA (cDNA clone MGC:729 IMAGE:3163327), complete cds.
AF110774 - Homo sapiens adrenal gland protein AD-001 mRNA, complete cds.
AF161501 - Homo sapiens HSPC152 mRNA, complete cds.
AF229068 - Homo sapiens HSPC170 protein mRNA, complete cds.
BC029482 - Homo sapiens hypothetical protein HSPC152, mRNA (cDNA clone MGC:32879 IMAGE:4737961), complete cds.
LF344604 - JP 2014500723-A/152107: Polycomb-Associated Non-Coding RNAs.
LF357425 - JP 2014500723-A/164928: Polycomb-Associated Non-Coding RNAs.
JD461403 - Sequence 442427 from Patent EP1572962.
AK312050 - Homo sapiens cDNA, FLJ92331.
KJ893925 - Synthetic construct Homo sapiens clone ccsbBroadEn_03319 TRMT112 gene, encodes complete protein.
DQ892261 - Synthetic construct clone IMAGE:100004891; FLH184671.01X; RZPDo839A08146D hypothetical protein HSPC152 (HSPC152) gene, encodes complete protein.
DQ895463 - Synthetic construct Homo sapiens clone IMAGE:100009923; FLH184667.01L; RZPDo839A08145D hypothetical protein HSPC152 (HSPC152) gene, encodes complete protein.
KJ906175 - Synthetic construct Homo sapiens clone ccsbBroadEn_15845 TRMT112 gene, encodes complete protein.
LF344603 - JP 2014500723-A/152106: Polycomb-Associated Non-Coding RNAs.
LF358962 - JP 2014500723-A/166465: Polycomb-Associated Non-Coding RNAs.
LF357424 - JP 2014500723-A/164927: Polycomb-Associated Non-Coding RNAs.
JD462584 - Sequence 443608 from Patent EP1572962.
MA580181 - JP 2018138019-A/152107: Polycomb-Associated Non-Coding RNAs.
MA580180 - JP 2018138019-A/152106: Polycomb-Associated Non-Coding RNAs.
MA446782 - JP 2018138019-A/18708: Polycomb-Associated Non-Coding RNAs.
MA593002 - JP 2018138019-A/164928: Polycomb-Associated Non-Coding RNAs.
MA594539 - JP 2018138019-A/166465: Polycomb-Associated Non-Coding RNAs.
MA593001 - JP 2018138019-A/164927: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-4202 - arsenic detoxification (mammals)
PWY-7888 - tRNA-uridine 2-thiolation (cytoplasmic)

Reactome (by CSHL, EBI, and GO)

Protein Q9UI30 (Reactome details) participates in the following event(s):

R-HSA-6786501 TRMT11:TRMT112 methylates guanosine-10 in tRNA
R-HSA-6800138 N6AMT1:TRMT112 transfers CH3 group from AdoMet to ETF1 dimer
R-HSA-6800149 N6AMT1:TRMT112 transfers CH3 group from AdoMet to MMAIII
R-HSA-6790982 WBSCR22:TRMT112 methylates guanosine-1639 of 18S rRNA yielding 7-methylguanosine-1639
R-HSA-6782315 tRNA modification in the nucleus and cytosol
R-HSA-72764 Eukaryotic Translation Termination
R-HSA-156581 Methylation
R-HSA-6790901 rRNA modification in the nucleus and cytosol
R-HSA-72306 tRNA processing
R-HSA-72766 Translation
R-HSA-156580 Phase II - Conjugation of compounds
R-HSA-8868773 rRNA processing in the nucleus and cytosol
R-HSA-8953854 Metabolism of RNA
R-HSA-392499 Metabolism of proteins
R-HSA-211859 Biological oxidations
R-HSA-72312 rRNA processing
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: AD-001, B2R539, ENST00000544844.1, ENST00000544844.2, ENST00000544844.3, ENST00000544844.4, ENST00000544844.5, HSPC152, HSPC170, J3KNG5, NM_016404, Q3MHC7, Q8N2Z4, Q9UI30, TR112_HUMAN, TRMT112 , uc324vxp.1, uc324vxp.2
UCSC ID: ENST00000544844.6_12
RefSeq Accession: NM_016404.3
Protein: Q9UI30 (aka TR112_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.