Human Gene TRIP10 (ENST00000313244.14_10) from GENCODE V47lift37
  Description: thyroid hormone receptor interactor 10, transcript variant 1 (from RefSeq NM_001288962.2)
Gencode Transcript: ENST00000313244.14_10
Gencode Gene: ENSG00000125733.18_16
Transcript (Including UTRs)
   Position: hg19 chr19:6,739,691-6,751,541 Size: 11,851 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr19:6,739,773-6,751,222 Size: 11,450 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:6,739,691-6,751,541)mRNA (may differ from genome)Protein (601 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CIP4_HUMAN
DESCRIPTION: RecName: Full=Cdc42-interacting protein 4; AltName: Full=Protein Felic; AltName: Full=Salt tolerant protein; Short=hSTP; AltName: Full=Thyroid receptor-interacting protein 10; Short=TR-interacting protein 10; Short=TRIP-10;
FUNCTION: Required for translocation of GLUT4 to the plasma membrane in response to insulin signaling (By similarity). Required to coordinate membrane tubulation with reorganization of the actin cytoskeleton during endocytosis. Binds to lipids such as phosphatidylinositol 4,5-bisphosphate and phosphatidylserine and promotes membrane invagination and the formation of tubules. Also promotes CDC42-induced actin polymerization by recruiting WASL/N- WASP which in turn activates the Arp2/3 complex. Actin polymerization may promote the fission of membrane tubules to form endocytic vesicles. Required for the formation of podosomes, actin-rich adhesion structures specific to monocyte-derived cells. May be required for the lysosomal retention of FASLG/FASL.
SUBUNIT: Interacts specifically with GTP-bound RHOQ. Interacts with DNM2 and PDE6G (By similarity). Homodimerizes, the dimers can polymerize end-to-end to form filamentous structures. Interacts specifically with GTP-bound CDC42. Interacts with AKAP9, ARHGAP17, DAAM1, DIAPH1, DIAPH2, DNM1, FASLG/FASL, GAPVD1, LYN, microtubules, SRC, WAS/WASP and WASL/N-WASP. Interacts with the ligand binding domain of the thyroid receptor (TR) in the presence of thyroid hormone. May interact with CTNNB1 and HD/HTT.
INTERACTION: Self; NbExp=2; IntAct=EBI-739936, EBI-739936;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton. Cytoplasm, cell cortex. Lysosome. Golgi apparatus. Cell membrane. Cell projection, phagocytic cup. Note=Translocates to the plasma membrane in response to insulin stimulation, and this may require active RHOQ (By similarity). Localizes to cortical regions coincident with F- actin, to lysosomes and to sites of phagocytosis in macrophages. Also localizes to the Golgi, and this requires AKAP9.
SUBCELLULAR LOCATION: Isoform 5: Cytoplasm, perinuclear region.
TISSUE SPECIFICITY: Expressed in brain, colon, heart, kidney, liver, lung, megakaryocyte, ovary, pancreas, peripheral blood lymphocytes, placenta, prostate, skeletal muscle, small intestine, spleen, testis, thymus and trachea.
INDUCTION: Induced by adriamycin treatment and this effect is counteracted by HGF/SF. Expression is reduced during differentiation.
DOMAIN: The F-BAR domain binds the phospholipid membrane with its concave surface. The end-to-end polymerization of dimers of these domains provides a curved surface that fits best membranes with around 600 A diameter, and may drive tubulation.
PTM: Tyrosine phosphorylated. Also phosphorylated by PKA.
SIMILARITY: Belongs to the FNBP1 family.
SIMILARITY: Contains 1 FCH domain.
SIMILARITY: Contains 1 REM (Hr1) repeat.
SIMILARITY: Contains 1 SH3 domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TRIP10
Diseases sorted by gene-association score: wiskott-aldrich syndrome (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 109.51 RPKM in Esophagus - Mucosa
Total median expression: 1921.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -35.6082-0.434 Picture PostScript Text
3' UTR -88.90319-0.279 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001060 - FCH
IPR001452 - SH3_domain

Pfam Domains:
PF00018 - SH3 domain
PF00611 - Fes/CIP4, and EFC/F-BAR homology domain

SCOP Domains:
109635 - DnaK suppressor protein DksA, alpha-hairpin domain
103657 - BAR/IMD domain-like
50044 - SH3-domain
88798 - N-terminal, heterodimerisation domain of RBP7 (RpoE)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2CT4 - NMR MuPIT 2EFK - X-ray MuPIT 2KE4 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q15642
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity
GO:0005515 protein binding
GO:0008289 lipid binding
GO:0042802 identical protein binding

Biological Process:
GO:0006897 endocytosis
GO:0007154 cell communication
GO:0007165 signal transduction
GO:0030036 actin cytoskeleton organization
GO:0043547 positive regulation of GTPase activity
GO:0051056 regulation of small GTPase mediated signal transduction
GO:0061024 membrane organization

Cellular Component:
GO:0001891 phagocytic cup
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005764 lysosome
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005938 cell cortex
GO:0016020 membrane
GO:0042995 cell projection
GO:0043231 intracellular membrane-bounded organelle
GO:0048471 perinuclear region of cytoplasm
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK313296 - Homo sapiens cDNA, FLJ93808, Homo sapiens thyroid hormone receptor interactor 10 (TRIP10), mRNA.
AB007845 - Homo sapiens STP mRNA for salt-tolerant protein, complete cds.
AB072596 - Homo sapiens HSTP mRNA for salt-tolerant protein mutant, complete cds.
AK223109 - Homo sapiens mRNA for thyroid hormone receptor interactor 10 variant, clone: KAT08721.
AL832186 - Homo sapiens mRNA; cDNA DKFZp686M2420 (from clone DKFZp686M2420).
AF502289 - Homo sapiens Cdc42-interaction protein 4 long isoform (CIP4) mRNA, complete cds.
AJ000414 - Homo sapiens mRNA for Cdc42-interacting protein 4 (CIP4).
AY081141 - Homo sapiens truncated Cdc42 interaction protein 4 (CIP4) mRNA, complete cds.
BC013002 - Homo sapiens thyroid hormone receptor interactor 10, mRNA (cDNA clone MGC:3839 IMAGE:3532036), complete cds.
JD462675 - Sequence 443699 from Patent EP1572962.
JD408108 - Sequence 389132 from Patent EP1572962.
CU680464 - Synthetic construct Homo sapiens gateway clone IMAGE:100018361 5' read TRIP10 mRNA.
KJ892744 - Synthetic construct Homo sapiens clone ccsbBroadEn_02138 TRIP10 gene, encodes complete protein.
DQ892747 - Synthetic construct clone IMAGE:100005377; FLH189321.01X; RZPDo839D1174D thyroid hormone receptor interactor 10 (TRIP10) gene, encodes complete protein.
DQ895993 - Synthetic construct Homo sapiens clone IMAGE:100010453; FLH189317.01L; RZPDo839D1164D thyroid hormone receptor interactor 10 (TRIP10) gene, encodes complete protein.
BT006698 - Homo sapiens thyroid hormone receptor interactor 10 mRNA, complete cds.
BT020167 - Homo sapiens thyroid hormone receptor interactor 10 mRNA, complete cds.
BT020171 - Homo sapiens thyroid hormone receptor interactor 10 mRNA, complete cds.
CR536513 - Homo sapiens full open reading frame cDNA clone RZPDo834A0822D for gene TRIP10, thyroid hormone receptor interactor 10; complete cds, incl. stopcodon.
AF380114 - Homo sapiens FELIC mRNA, complete cds, alternatively spliced.
L40379 - Homo sapiens thyroid receptor interactor (TRIP10) mRNA, 3' end of cds.
JD203361 - Sequence 184385 from Patent EP1572962.
JD280018 - Sequence 261042 from Patent EP1572962.
JD490873 - Sequence 471897 from Patent EP1572962.
JD157310 - Sequence 138334 from Patent EP1572962.
JD365620 - Sequence 346644 from Patent EP1572962.
JD162460 - Sequence 143484 from Patent EP1572962.
JD292103 - Sequence 273127 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15642 (Reactome details) participates in the following event(s):

R-HSA-8867754 F- and N- BAR domain proteins bind the clathrin-coated pit
R-HSA-8868230 SNX9 recruits components of the actin polymerizing machinery
R-HSA-8871194 RAB5 and GAPVD1 bind AP-2
R-HSA-8868658 HSPA8-mediated ATP hydrolysis promotes vesicle uncoating
R-HSA-8868659 Clathrin recruits auxilins to the clathrin-coated vesicle
R-HSA-8868661 Dynamin-mediated GTP hydrolysis promotes vesicle scission
R-HSA-8868660 Auxilin recruits HSPA8:ATP to the clathrin-coated vesicle
R-HSA-8868648 SYNJ hydrolyze PI(4,5)P2 to PI(4)P
R-HSA-194922 GAPs inactivate Rho GTPase:GTP by hydrolysis
R-HSA-8868236 BAR domain proteins recruit dynamin
R-HSA-8868651 Endophilins recruit synaptojanins to the clathrin-coated pit
R-HSA-8856828 Clathrin-mediated endocytosis
R-HSA-199991 Membrane Trafficking
R-HSA-194840 Rho GTPase cycle
R-HSA-5653656 Vesicle-mediated transport
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2R8A6, B7WP22, CIP4, CIP4_HUMAN, D6W645, ENST00000313244.1, ENST00000313244.10, ENST00000313244.11, ENST00000313244.12, ENST00000313244.13, ENST00000313244.2, ENST00000313244.3, ENST00000313244.4, ENST00000313244.5, ENST00000313244.6, ENST00000313244.7, ENST00000313244.8, ENST00000313244.9, NM_001288962, O15184, Q15642, Q53G22, Q5TZN1, Q6FI24, Q8NFL1, Q8TCY1, Q8TDX3, Q96RJ1, STOT, STP, uc317pjj.1, uc317pjj.2
UCSC ID: ENST00000313244.14_10
RefSeq Accession: NM_001288962.2
Protein: Q15642 (aka CIP4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.