Human Gene TRIM29 (ENST00000341846.10_7) from GENCODE V47lift37
  Description: tripartite motif containing 29, transcript variant 1 (from RefSeq NM_012101.4)
Gencode Transcript: ENST00000341846.10_7
Gencode Gene: ENSG00000137699.17_15
Transcript (Including UTRs)
   Position: hg19 chr11:119,981,994-120,008,821 Size: 26,828 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr11:119,983,122-120,008,739 Size: 25,618 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:119,981,994-120,008,821)mRNA (may differ from genome)Protein (588 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TRI29_HUMAN
DESCRIPTION: RecName: Full=Tripartite motif-containing protein 29; AltName: Full=Ataxia telangiectasia group D-associated protein;
FUNCTION: It is able to complement the radiosensitivity defect of an ataxia telangiectasia (AT) fibroblast cell line.
SUBUNIT: Interacts with VIM and HINT1.
INTERACTION: O15169:AXIN1; NbExp=2; IntAct=EBI-702370, EBI-710484; O14641:DVL2; NbExp=5; IntAct=EBI-702370, EBI-740850; Q96CN9:GCC1; NbExp=2; IntAct=EBI-702370, EBI-746252; P49841:GSK3B; NbExp=2; IntAct=EBI-702370, EBI-373586;
SUBCELLULAR LOCATION: Cytoplasm. Note=Colocalizes with intermediate filaments.
TISSUE SPECIFICITY: Expressed in placenta, prostate and thymus.
PTM: Constitutively phosphorylated by PKC on serine/threonine in A431 cells.
SIMILARITY: Contains 1 B box-type zinc finger.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TRIM29
Diseases sorted by gene-association score: ataxia-telangiectasia (23), ataxia (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 317.25 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 1141.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -10.7082-0.130 Picture PostScript Text
3' UTR -412.601128-0.366 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000315 - Znf_B-box

Pfam Domains:
PF00643 - B-box zinc finger

SCOP Domains:
53850 - Periplasmic binding protein-like II
57845 - B-box zinc-binding domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2CSV - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q14134
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0002039 p53 binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0098641 cadherin binding involved in cell-cell adhesion

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0002376 immune system process
GO:0006366 transcription from RNA polymerase II promoter
GO:0045087 innate immune response
GO:0098609 cell-cell adhesion
GO:1900181 negative regulation of protein localization to nucleus

Cellular Component:
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0005764 lysosome
GO:0005913 cell-cell adherens junction


-  Descriptions from all associated GenBank mRNAs
  BX648072 - Homo sapiens mRNA; cDNA DKFZp686I03210 (from clone DKFZp686I03210).
AL832678 - Homo sapiens mRNA; cDNA DKFZp313K2117 (from clone DKFZp313K2117).
BC017352 - Homo sapiens tripartite motif-containing 29, mRNA (cDNA clone MGC:29525 IMAGE:5013158), complete cds.
BC010644 - Homo sapiens tripartite motif-containing 29, mRNA (cDNA clone MGC:8888 IMAGE:3855016), complete cds.
AK093404 - Homo sapiens cDNA FLJ36085 fis, clone TESTI2020084.
AX748104 - Sequence 1629 from Patent EP1308459.
AK122720 - Homo sapiens cDNA FLJ16217 fis, clone CTONG2028518, highly similar to Homo sapiens tripartite motif protein TRIM29 alpha mRNA.
AF230388 - Homo sapiens tripartite motif protein TRIM29 alpha mRNA, complete cds.
AF230389 - Homo sapiens tripartite motif protein TRIM29 beta mRNA, complete cds.
L24203 - Homo sapiens ataxia-telangiectasia group D-associated protein mRNA, complete cds.
JD472783 - Sequence 453807 from Patent EP1572962.
JD278855 - Sequence 259879 from Patent EP1572962.
JD077733 - Sequence 58757 from Patent EP1572962.
JD073047 - Sequence 54071 from Patent EP1572962.
JD372226 - Sequence 353250 from Patent EP1572962.
JD485684 - Sequence 466708 from Patent EP1572962.
JD544372 - Sequence 525396 from Patent EP1572962.
JD388649 - Sequence 369673 from Patent EP1572962.
JD540372 - Sequence 521396 from Patent EP1572962.
JD078019 - Sequence 59043 from Patent EP1572962.
JD469215 - Sequence 450239 from Patent EP1572962.
JD084748 - Sequence 65772 from Patent EP1572962.
JD389228 - Sequence 370252 from Patent EP1572962.
JD190819 - Sequence 171843 from Patent EP1572962.
JD316251 - Sequence 297275 from Patent EP1572962.
JD230719 - Sequence 211743 from Patent EP1572962.
JD222991 - Sequence 204015 from Patent EP1572962.
JD393103 - Sequence 374127 from Patent EP1572962.
JD167318 - Sequence 148342 from Patent EP1572962.
JD231461 - Sequence 212485 from Patent EP1572962.
JD196152 - Sequence 177176 from Patent EP1572962.
AK223090 - Homo sapiens mRNA for tripartite motif protein TRIM29 isoform alpha variant, clone: KAT06379.
JD400269 - Sequence 381293 from Patent EP1572962.
JD189395 - Sequence 170419 from Patent EP1572962.
JD332865 - Sequence 313889 from Patent EP1572962.
JD149652 - Sequence 130676 from Patent EP1572962.
AK303969 - Homo sapiens cDNA FLJ52831 complete cds, highly similar to Tripartite motif-containing protein 29.
JD480086 - Sequence 461110 from Patent EP1572962.
JD218399 - Sequence 199423 from Patent EP1572962.
JD503656 - Sequence 484680 from Patent EP1572962.
JD192198 - Sequence 173222 from Patent EP1572962.
AK299459 - Homo sapiens cDNA FLJ52736 complete cds, highly similar to Tripartite motif-containing protein 29.
JD414209 - Sequence 395233 from Patent EP1572962.
JD521890 - Sequence 502914 from Patent EP1572962.
JD251705 - Sequence 232729 from Patent EP1572962.
JD392207 - Sequence 373231 from Patent EP1572962.
JD156167 - Sequence 137191 from Patent EP1572962.
JD157492 - Sequence 138516 from Patent EP1572962.
JD165986 - Sequence 147010 from Patent EP1572962.
JD273739 - Sequence 254763 from Patent EP1572962.
JD400169 - Sequence 381193 from Patent EP1572962.
JD392970 - Sequence 373994 from Patent EP1572962.
JD420343 - Sequence 401367 from Patent EP1572962.
JD392942 - Sequence 373966 from Patent EP1572962.
JD398595 - Sequence 379619 from Patent EP1572962.
JD390964 - Sequence 371988 from Patent EP1572962.
JD097575 - Sequence 78599 from Patent EP1572962.
AK299472 - Homo sapiens cDNA FLJ60841 complete cds, highly similar to Tripartite motif-containing protein 29.
JD219529 - Sequence 200553 from Patent EP1572962.
JF432236 - Synthetic construct Homo sapiens clone IMAGE:100073402 tripartite motif-containing 29 (TRIM29) gene, encodes complete protein.
KJ898528 - Synthetic construct Homo sapiens clone ccsbBroadEn_07922 TRIM29 gene, encodes complete protein.
EU446943 - Synthetic construct Homo sapiens clone IMAGE:100070347; IMAGE:100012152; FLH257234.01L tripartite motif-containing 29 (TRIM29) gene, encodes complete protein.
AB464321 - Synthetic construct DNA, clone: pF1KB7893, Homo sapiens TRIM29 gene for tripartite motif-containing protein 29, without stop codon, in Flexi system.
CU675956 - Synthetic construct Homo sapiens gateway clone IMAGE:100019916 5' read TRIM29 mRNA.
JD232060 - Sequence 213084 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q14134 (Reactome details) participates in the following event(s):

R-HSA-877300 Interferon gamma signaling
R-HSA-913531 Interferon Signaling
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ATDC, ENST00000341846.1, ENST00000341846.2, ENST00000341846.3, ENST00000341846.4, ENST00000341846.5, ENST00000341846.6, ENST00000341846.7, ENST00000341846.8, ENST00000341846.9, NM_012101, Q14134, Q96AA9, Q9BZY7, TRI29_HUMAN, uc317wdo.1, uc317wdo.2
UCSC ID: ENST00000341846.10_7
RefSeq Accession: NM_012101.4
Protein: Q14134 (aka TRI29_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.